rna3366, rna3366 (mRNA) Nannochloropsis gaditana

Overview
Namerna3366
Unique Namerna3366
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1543
Alignment locationCM002461.1:229338..231185 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100563g1.2977.mrna
Orig protein idgnl|cribi|Naga_100563g1.2977
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:229338..231185 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100563g1gene3241Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27316.1cds3357Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3366rna3366-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3366 ID=rna3366|Name=rna3366|organism=Nannochloropsis gaditana|type=mRNA|length=1543bp
AAGTCGGGAGCAGCGGAGGACGGGACGCCTCTCCCCCCTCGCCGGACCTC
GGGAAGGTGGAGCAAGGAGGAGGAGGATCAGTTCATCCACGCGGTGTGTG
ACTACCTGCATCGACCCCGCTCCACCCCCCTGGCCGAGCTGCCCCGGGAG
GGGATCAATTGGACTGAGGTGGCCTCCCGCCTGCACTCCACCCGCTCACG
GATCCATTGCCTGAACAAATGGGCCCAGCTCCAAGGGAAGCACCGGCGCG
TGGAGGAACGTCGGCGGCTGGCGTCGGTCGTCGGCGACGTTGGCCTCCCG
TCGGGCTACCTGAACGGTTCTCTCCCTCCCCCGCCGCCTCCTCCACCACC
TCCTCCTCCTCTTCCACTTCCTCCACCCATCGCCCCCCTGATCTCCACTG
CCCCCCCTCCTTCGTACTCATCCGAGGCCCCTCCCTCCCTTCCTCCCTCC
CTCCCCCCCTTCCTCCCCCCGCCCTTCCCCCTGCCCGCCCCGATGGCTAA
TTCTTCCACTTTCAAGATGGAGAATTTGCAACAAGACCTGCAGTTGTTGG
ACCGATTGATCGAACTGGCACCGGCGGAGGAAAGTGAGGTGGTTTGGTCC
CGTTTGCCGGTTCGAAACGCCCTGCAACGGTGGGGGAAATTGAAGCAGAT
GCTGGAGCGGGGAGGGAAGGGGAGAGAAGGAGGGGACGTTTTGGTGGGGG
GGGACGCGGCGTCGCTGCAGAAAGCGATGCAGGTGATGAAGGAGGAAGTT
TTGGAGGAGATACGAAAGACGGAGCTTCGCGTGCAAAAGAGGGCGATGCG
GGCCCGGCGTTCCAAGGAGCGGGAACGGAGGATGGCAGAGACCAAAGTCC
GGACCCGGTTGATGAAGGAAGAGAGGAGGTTGAAGAGGATGGAGGAGGCG
GTGGTGCGGGAGCGGCGACGGAAAGAGAAGGAGGAGAGGAGGAAGAGGAA
GAGGAGGGAAAGCGGGTTGGAGGCAGTGTCGATTCTGGCCTCCCTCGCGA
CGAAAGGGTCGGTGAAGGAGAAGGAGGAGGAGGAGGAGGAGGAGTTGGAG
GAAGAGGAAATTGTAATCACCTCGGACAGTGAGGACGGGGAAAGGAGAAG
AAAGAGGAGAAGAGGGGGGGGCGTCGGGAAGGGAAGGGGGAGGAGGAAGG
AGGGGAGGAAGAGGAGGAAGAGGAGGAGGATTAAAAAGTGGGCGGGGGCG
TGTTTGCAATTCGAAGAGCTTGTACTGAGAAAATCATTGTGCCACGACCG
GCAAAATGAAGAGGAAAGACTGCCATCACAAGGACTCGCACAGTCTGTCA
CAAAGGATTTGAAACATGATAAAGGGTGGGTGAGGAGGTGAGGCCGTACA
CGGCCAGCAGCCGGTGTCTGGTTGCTGATTCATCAACGTGCTTTTGATGC
GATACGTTCAGCATGGAACTGGTATGTCCCACCGTTACAAGTGAAAGACT
CGGGGGATAGGGTACGGCCGCTTAGTACCTCTGAAAAGGAGGGATGTAAA
CCCGATAAATGGCGCGAAAAGTAAGTGACTCGATGAAGCTTCC
back to top

protein sequence of rna3366

>rna3366-protein ID=rna3366-protein|Name=rna3366|organism=Nannochloropsis gaditana|type=polypeptide|length=419bp
MAAQADDLKWLTTLCLNFGVATAVPATETVHSSSLLPSLSEVPPKNQLAC
SHDFFRAAHLFHEATFGPASLSYPPSPTSISPTTEEEKHGLLLLLLAVTS
SLSSRSGASSLLTPDESSYYLGQLHTAKTRISSSSKTSALKPICHNLHQT
IILLEILIRGSSTSSLQTPRPPSQPGSRPSSRPSSASGLANSTGNGSRGE
EDKDKQVEDPTLGLSALISKETSTLLTFPFEVLHALARNCLQSSYVSVLP
PSLRTSAVALFRLALQRQLQKHPSTSAKGDGGAEERNEKALWVYLDLYHA
VGGTKAGLEVVREFRAGIETKSLVPAPSCTLSRVASRLAAALYNEGVSKL
EMMGGGEEGRESGPEACLEAALGLLPWAEEDFKANYHEQIHSMLSVAREL
EEVEREDEKQRRMSMGTES
back to top

mRNA from alignment at CM002461.1:229338..231185-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3366 ID=rna3366|Name=rna3366|organism=Nannochloropsis gaditana|type=mRNA|length=1848bp|location=Sequence derived from alignment at CM002461.1:229338..231185- (Nannochloropsis gaditana)
ATGGCAGCCCAAGCTGACGACTTGAAATGGCTCACGACACTTTGTCTGAA
TTTCGGTGTCGCCACAGCCGTCCCCGCTACCGAGACCGTCCACTCGTCCT
CCCTCTTACCTTCCCTTTCTGAGGTACCTCCCAAAAATCAGCTTGCTTGC
TCCCACGATTTCTTTCGAGCCGCCCACCTATTCCACGAAGCTACCTTCGG
CCCAGCCTCCCTTTCATACCCGCCCTCTCCGACCTCTATATCTCCCACGA
CGGAGGAAGAGAAACATGGCCTTCTCCTCCTCCTTCTGGCGGTTACTTCC
TCGCTATCCTCCCGGTCGGGGGCTTCCTCTCTCCTTACCCCCGATGAGTC
TTCCTACTACCTTGGTCAGCTTCATACAGCAAAAACACGAATTTCATCCA
GCTCCAAAACTTCGGCGCTCAAACCCATTTGTCATAATTTGCATCAGACC
ATCATCCTTCTCGAAATTCTAATCCGAGGCTCTTCTACTTCCTCCCTCCA
AACTCCTCGTCCGCCCTCCCAACCTGGCTCGCGACCATCCTCTCGCCCTT
CTTCTGCCTCTGGGCTGGCGAATAGTACTGGGAACGGCTCGAGGGGAGAA
GAGGACAAGGATAAGCAGGTGGAAGATCCCACTCTCGGCTTATCTGCTCT
GATCAGCAAGGAGACGTCAACCCTTCTCACTTTTCCTTTCGAAGTTCTCC
ACGCCCTAGCTCGCAATTGCCTTCAATCGTCTTATGTCTCTGTCCTCCCT
CCCTCCCTCCGCACGTCGGCAGTGGCTCTCTTTCGCCTTGCCCTTCAAAG
GCAACTGCAGAAACATCCATCGACGTCCGCCAAAGGGGATGGGGGAGCGG
AGGAAAGGAATGAAAAAGCGCTGTGGGTTTATCTAGACCTCTACCATGCT
GTGGGAGGCACCAAGGCTGGCTTGGAGGTGGTGAGGGAATTTCGAGCTGG
AATCGAGACAAAATCTCTCGTACCCGCCCCTTCGTGCACCCTTTCACGCG
TCGCCTCCAGGCTAGCGGCAGCTTTGTACAACGAGGGCGTGAGTAAGCTT
GAGATGATGGGAGGGGGAGAGGAAGGGAGAGAAAGCGGGCCAGAGGCATG
CTTGGAGGCGGCGCTGGGACTGTTGCCATGGGCGGAGGAAGACTTCAAAG
CAAATTACCATGAGCAGATTCATTCTATGCTGAGTGTGGCGAGGGAGTTG
GAAGAGGTCGAGAGGGAGGACGAGAAGCAGCGGCGGATGAGTATGGGGAC
TGAGTCGTGAAGAATTAGGTCATAAGGGCCTCCGGATGGATGTATGGGAC
TGTTCTCACTGTAGATAGAACCAGGAAGAAAGATGTGGGATAAATGTAAG
ATGTATAGAGGAAGCGCACACCAAGACGAGGAAAGGATGGGAGGAGAAGC
AGCCACATGCACCCGAAAAAGGGAGGGAAACAAGATTGATGGGGTAGAGG
ATCGAGAGTGGTCTGCGTCCTTCTACAAAGGTAGTCTTTCCAGAAAGGTG
ATTTAGGGGCTGGCATACGAACGGGCAGGTATCATGACGGCAGAGTGTCA
GGATATTCGGGAGAGAATAGGGTGCCCATGCATCAAGCAAGCGAAGCAGG
GAGTCAATGTGAACCAGGGCGAGGGGCAGGAGCCGGAAGGAGCAACTGCC
AGAACCGCCCACAAGGGAGGGGAGGATCCATGAATTGAGCCCGAAACACA
GGTGAAGGGGGATAATCGTAAATCGAAAGCGTGGAAACGAAACAAAACAG
ACCTACAGGGAGCGCGCGTTCACCGCCACACACATTGGCCCCGAGAAACC
AGGAAAGAGAAGAGAAAATCAGGTTGAATCCTAAGTGATCCTTCCCCC
back to top

Coding sequence (CDS) from alignment at CM002461.1:229338..231185-

>rna3366 ID=rna3366|Name=rna3366|organism=Nannochloropsis gaditana|type=CDS|length=1260bp|location=Sequence derived from alignment at CM002461.1:229338..231185- (Nannochloropsis gaditana)
ATGGCAGCCCAAGCTGACGACTTGAAATGGCTCACGACACTTTGTCTGAA
TTTCGGTGTCGCCACAGCCGTCCCCGCTACCGAGACCGTCCACTCGTCCT
CCCTCTTACCTTCCCTTTCTGAGGTACCTCCCAAAAATCAGCTTGCTTGC
TCCCACGATTTCTTTCGAGCCGCCCACCTATTCCACGAAGCTACCTTCGG
CCCAGCCTCCCTTTCATACCCGCCCTCTCCGACCTCTATATCTCCCACGA
CGGAGGAAGAGAAACATGGCCTTCTCCTCCTCCTTCTGGCGGTTACTTCC
TCGCTATCCTCCCGGTCGGGGGCTTCCTCTCTCCTTACCCCCGATGAGTC
TTCCTACTACCTTGGTCAGCTTCATACAGCAAAAACACGAATTTCATCCA
GCTCCAAAACTTCGGCGCTCAAACCCATTTGTCATAATTTGCATCAGACC
ATCATCCTTCTCGAAATTCTAATCCGAGGCTCTTCTACTTCCTCCCTCCA
AACTCCTCGTCCGCCCTCCCAACCTGGCTCGCGACCATCCTCTCGCCCTT
CTTCTGCCTCTGGGCTGGCGAATAGTACTGGGAACGGCTCGAGGGGAGAA
GAGGACAAGGATAAGCAGGTGGAAGATCCCACTCTCGGCTTATCTGCTCT
GATCAGCAAGGAGACGTCAACCCTTCTCACTTTTCCTTTCGAAGTTCTCC
ACGCCCTAGCTCGCAATTGCCTTCAATCGTCTTATGTCTCTGTCCTCCCT
CCCTCCCTCCGCACGTCGGCAGTGGCTCTCTTTCGCCTTGCCCTTCAAAG
GCAACTGCAGAAACATCCATCGACGTCCGCCAAAGGGGATGGGGGAGCGG
AGGAAAGGAATGAAAAAGCGCTGTGGGTTTATCTAGACCTCTACCATGCT
GTGGGAGGCACCAAGGCTGGCTTGGAGGTGGTGAGGGAATTTCGAGCTGG
AATCGAGACAAAATCTCTCGTACCCGCCCCTTCGTGCACCCTTTCACGCG
TCGCCTCCAGGCTAGCGGCAGCTTTGTACAACGAGGGCGTGAGTAAGCTT
GAGATGATGGGAGGGGGAGAGGAAGGGAGAGAAAGCGGGCCAGAGGCATG
CTTGGAGGCGGCGCTGGGACTGTTGCCATGGGCGGAGGAAGACTTCAAAG
CAAATTACCATGAGCAGATTCATTCTATGCTGAGTGTGGCGAGGGAGTTG
GAAGAGGTCGAGAGGGAGGACGAGAAGCAGCGGCGGATGAGTATGGGGAC
TGAGTCGTGA
back to top
Synonyms
Publications