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Properties
| Property Name | Value |
|---|
| Product | mcm family protein |
| Orig transcript id | gnl|cribi|Naga_100393g6.8503.mrna |
| Orig protein id | gnl|cribi|Naga_100393g6.8503 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:195487..197922 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3354 ID=rna3354|Name=rna3354|organism=Nannochloropsis gaditana|type=mRNA|length=2205bp
TCCCTGCTTCTTGCCCTGGCCTCCACAAAACTGGGATAGGTCATGACGTG
AAATTACTTCCAAGATATGTATAGCCTTGTGATACACGTTTCATGCGTGA
GGTCTGGGAAAGAAAGTTTCTTTCTCCATGTCATCGCTAGCTCGTCAATG
AGTGCCGTTGGCCTTTGACATTGAAGCGTAACCCCGACCGCATCTTGTAA
GTGTTCCGCTACTCATTCCACTGTTCCCATCCATATTTACCCGCGGCAGG
CTCTATATTGCATTGGAGAATACGCCATGGTGAATCGTTGTTGGACGTTG
CCGATGGCCATGGCTATTTTTGCTCCTGTGCTACTTCTGGGCGGCATTCC
TTTAACAAATGCTTTTTTGCATCCTCTCCGTCCCGCCAAGACCGACTCCT
TGCTCGCTCCCTCACAGAGGCACGCGGCTATTTCTGGCCCTATGTATGCC
CAGCGGGATGTCATGAAAATGGTCAACCCGTCTGAATGGCAAGCGTCGTG
GTTGCAGCGGATTCGATCCCGTGTGAGCCCCCCGGTGGACAAGCCCTCTG
TCAGTCCTGTGCCGTCACAAAAAGAAAAGAAAGAGCAAACGCCAGCAAAA
GCGGCCAGCACTAGTAACAGTCGCTCTAGCCCTACTGTAGGGGTGAAAAA
CAGTGATGCCAAGGTACCAATGCCTCCTCAACAGTTAAGCCGTTTTACTG
CGGCTGTCATCGAGGAAGAGAGCGCTCACGCCAGTGCCGTGGAAGCAGAG
AAACGCGAGCTAAAAACCCTAAAAGGCATCCCCGACACCTTTTTGAAGGA
CGACATTGTTGCCAACGACAACACGGTCAGGCAGGCTTCGGCAGTTGTGG
GTGCGCTGGCCGGGTTTGCCCTGGGTGGTCCGTTGCTTGCCTTGGTGGGA
GCCGCTTGGACGAGTTATTCCTGCACAGTAACACCCTCCGACGCCGGTGA
GGCTGCCAGGGGCACGGGGAAATGGGCCCTGAATGTGCACAACTTCATGG
CGAAGATGAACCGGAAACATGGCTACGTGCAAAAACTCTCCCAAGGGCTG
GGTGGGTGGTACCGGCGGTTCCGAAAAGAAACGGCGCCGGACGCGACTTT
TTTGGATGTAGCCGAGTCATCGGTGCAAAGCGCATTGGAGGCCACGGACC
AGCTCCGGAAGGACCTGGATGTGGCGGGCCCGGTGGAGAAGGCTTTGATC
AAAGGGGGGGAGTGGAGCGCGGGGGGCCTGCGGAGCCTGATCCGTTTGAA
TGAGGAGAACAGGGTCACGGAGAGGTTGTGGGAGGTGGTGGCAAAGCGGT
GAGGAGACATGCCGTCCGTGAGGGTGGGGTCGTGTTAGATGATGAGGTTC
GGGGCCCCTGGCCTTAATTTCTTCTCGGAAGAAGGGAAAGGAAGAGGAAG
GGCAGGCGGCTCATTAGGGCGATAGCGGTTGAAAGAGAAGGCGGGAAGCT
GAGAAAGGAGGGGAGGCAATGACAAAGATAAAGTGGAGGGAGCGACGGGG
AGCACAGGGGTCGATTGATAAGCAGCCATTGTGTTATTTTTTGGGGGGGT
GTACCATGGTGACGGAGGGTGAGCCTGAGAATTTGCGAGGGAGAGGGTTA
TGTACAGAGGAGCACTGGCGTTGCTGAAAGAGAAAGGGCGGCGACGGTGG
AGACAGGAGAGGCTGAGAAGGCCGAAGGACGCGAACCTTGTCACGGTCAA
GTCAACCAACGTACCGCTTCTCCCTTTGACCTTCTAGAGGGTCCTCGCGT
CGGGTCTCGGGCTGGCAGAGCAGGAAGAGACTGTGCCCCTTATTTCTTTT
TGCGTCACTGGTTGGCCTCTCATCAAAATTGCGGAGGGCTTCAAGGTCCT
GCTTTATCCCCCCCCTCGACACTCCTCCTCTTGACATGGAGCCTGAGCCG
TCCCTGCTCGGCCGCTACCAGCCGGGCATCCACCCCCATCTCTTGCATGA
CTGGGCTCTGTACAACCTCTTGCCCTTGGAGCGAGGCAATCACGCGTCGA
TTTTCCGGGTCGTCGCACAGGAAACGGACGCACACCACTGCCCACTCCCT
CAGGAAAGGGTTCTCGGAATCCACATTGCAGTGGTTCAACACTAGAGGCA
ACCCCTGTTGCTCCCGCACCATCTCCTGCGCGCGGCCATGGCCGTGGCAG
AGATTGCCCAATACCTGAATCAAGCGGGTTTTTCGACCTTCTGGGGTGGG
AAGAG back to topprotein sequence of rna3354 >rna3354-protein ID=rna3354-protein|Name=rna3354|organism=Nannochloropsis gaditana|type=polypeptide|length=676bp
MRNLNPEDVDHLVALRGMVIRCSTIIPELHLGCFRCFMCGFEVLVENDRG
RIEEPVRCEHCQAKEAMELLTNRCAYTNKQIIRMQETPDEIPEGETPNSL
TLFAFDELTDAVRPGDRVEVTGILRAAPRRVHPRLTTLRSVYKTHVEALH
FSHVDKDMKVEAGPGEGTGRSGLAGGDGEGVGVGTTGCDTTRMRGLHLPA
SRVAEIKALSQDPWIYEKLSRAVAPSIWGMEDVKKGVLCLLFGGTDKKAG
ARKERRGWERRAGRREREGGRAGGRAGGRAGLAPEGTGPGMNGDRREGEE
EEEEEAEDPGAVSCRGDINILLCGDPGTSKSQILLYVHNLAPRGIYTSGK
GSSAVGLTASVIRDVETKELVLESGALVLSDQGVCCIDEFDKMSETTRAI
LHEAMEQQTVSIAKAGIICTLNARTSILASANPVDSRYNPRLSVVENIQL
PPTLLSRFDLIYLVLDSPDEDKDRRLARHLISLYYEEPAVEAPDVDHALL
KDYIAYARAHVFPVLSEEAGEQLIQGYLGLRGSGGEGKTITATPRQLESL
IRLSEALAKIRLASVVERSDVVEAMRLMAEATLKAATDPETGKLDLGNID
GTSRDREARQLLTAAVKEFLEPRKGLRMSVSEIRQGVQAQSTVEVKQGLL
VDVLRKELEPEGVVKYLPATHTVLIQ back to topmRNA from alignment at CM002461.1:195487..197922- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3354 ID=rna3354|Name=rna3354|organism=Nannochloropsis gaditana|type=mRNA|length=2436bp|location=Sequence derived from alignment at CM002461.1:195487..197922- (Nannochloropsis gaditana)
CGGATCCAGGTCCGTCTTTTCAATTTGAAACGGGTGAGCAAGATGCGGAA
TTTGAATCCAGAGGATGTGGACCACCTGGTTGCCTTGCGAGGCATGGTAA
TTCGCTGCAGCACCATTATTCCCGAGCTCCATTTGGGGTGTTTCCGCTGC
TTTATGTGCGGTTTTGAGGTGCTGGTGGAGAACGACCGGGGCCGGATCGA
GGAGCCTGTCCGCTGCGAGCATTGCCAGGCCAAGGAGGCGATGGAGCTGT
TGACGAACCGGTGCGCCTACACGAACAAACAGATCATCCGGATGCAGGAA
ACCCCCGACGAAATCCCCGAGGGCGAAACTCCGAACAGCCTGACCCTCTT
TGCCTTCGACGAGCTCACGGACGCGGTGCGTCCGGGGGATCGGGTGGAGG
TGACGGGGATCTTGCGGGCGGCTCCCCGCCGGGTCCACCCCCGCTTGACC
ACGCTCCGCTCCGTGTACAAAACCCACGTGGAAGCCCTGCATTTCAGTCA
CGTCGACAAGGACATGAAGGTGGAGGCGGGCCCGGGGGAAGGCACAGGTC
GGTCGGGACTAGCCGGGGGGGACGGCGAAGGGGTGGGGGTGGGGACGACG
GGGTGCGATACTACCCGGATGCGCGGCTTGCACTTGCCGGCGTCGCGGGT
GGCCGAGATCAAGGCCCTGTCCCAAGACCCTTGGATCTACGAAAAATTGT
CCCGGGCAGTGGCCCCTTCGATTTGGGGGATGGAGGACGTGAAGAAAGGG
GTCCTGTGTTTGTTGTTTGGAGGAACGGACAAGAAGGCAGGGGCGCGGAA
AGAGAGGCGTGGGTGGGAGCGGAGGGCGGGAAGGAGGGAGAGGGAGGGAG
GGAGGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGCTTGGCCCCGGAAGGG
ACCGGCCCTGGCATGAACGGCGATAGACGGGAAGGGGAAGAGGAGGAAGA
AGAAGAGGCAGAGGACCCCGGCGCCGTGAGCTGCCGGGGGGACATCAACA
TCCTCCTCTGCGGAGATCCGGGGACGAGCAAATCGCAGATCCTCCTCTAC
GTGCACAACCTGGCCCCCCGGGGCATCTACACCTCGGGGAAAGGCTCCTC
GGCGGTGGGCCTGACCGCCTCCGTCATCCGGGACGTGGAGACGAAGGAGC
TGGTCTTGGAGTCGGGGGCATTGGTGTTGAGCGACCAAGGGGTCTGCTGC
ATCGACGAGTTCGACAAGATGAGCGAAACCACCCGGGCTATCCTCCACGA
GGCCATGGAGCAACAGACCGTCTCCATCGCCAAGGCAGGGATCATCTGCA
CCCTGAATGCCCGCACGTCCATCTTGGCCTCCGCCAATCCGGTCGACTCC
CGGTACAACCCCCGCTTGTCCGTGGTGGAAAACATCCAGTTGCCACCCAC
CCTCTTGTCCCGCTTCGACCTCATCTACTTGGTCCTGGACAGCCCGGACG
AGGACAAGGACCGGCGTCTGGCGCGGCATTTGATCTCGCTCTATTACGAG
GAACCTGCCGTCGAGGTAGGCCCCGAGGGGGGAATGGATCCATCTGCTTT
CTCCAGGAAAGACTCGCAGGCGTGCCCATCGCGCCCTCGTTTTTCGCAAA
GGGTGCCTATTGGTGTTCCTCCCCCCCCCCTGACCCCCCTATCTCTCGGT
TAACATCAGGCGCCGCCGACGAACCATGGAAAATCTCTTTCATCTCTCTT
CCTCTCTTCTTTCTTTTATGTTTTTTGGAGGGCCCCACGCTCCTTGTCAT
TTGACCTCGCCCTCCGCATGATGGCTCCCTGCCGGCACAAATCACACACC
CCTGCCCTCCTTCCCCCCCTCCCCCCCCTCCCTCAGGCCCCGGATGTCGA
CCACGCCCTGCTCAAGGACTATATTGCCTACGCGCGCGCCCACGTCTTCC
CCGTTCTCTCCGAAGAAGCAGGGGAACAACTCATTCAGGGGTACCTGGGG
CTGCGGGGAAGCGGGGGCGAAGGGAAGACCATCACGGCCACGCCACGCCA
GCTGGAATCTTTGATCCGTCTGTCCGAGGCCCTGGCCAAAATCCGGTTGG
CCTCGGTGGTGGAGCGGTCGGACGTGGTGGAAGCCATGCGGTTGATGGCG
GAGGCCACTTTGAAGGCGGCCACTGACCCGGAGACGGGGAAATTGGACCT
GGGGAACATCGACGGGACAAGCCGGGACCGGGAGGCGAGGCAGTTGCTGA
CGGCGGCCGTGAAGGAATTTCTGGAACCGCGGAAAGGTCTTCGGATGAGC
GTGAGCGAGATCCGGCAAGGGGTGCAGGCGCAGAGCACGGTCGAAGTCAA
GCAGGGATTGCTGGTGGACGTTTTGAGGAAGGAGCTGGAGCCCGAGGGCG
TGGTCAAGTACCTCCCGGCGACCCACACGGTCTTGATCCAATAGAAGGAG
ATGGGGAAAGCCAGCATCGGTCCACTCCCTGGTGGG back to topCoding sequence (CDS) from alignment at CM002461.1:195487..197922- >rna3354 ID=rna3354|Name=rna3354|organism=Nannochloropsis gaditana|type=CDS|length=4062bp|location=Sequence derived from alignment at CM002461.1:195487..197922- (Nannochloropsis gaditana)
GCCCCGGATGTCGACCACGCCCTGCTCAAGGACTATATTGCCTACGCGCG
CGCCCACGTCTTCCCCGTTCTCTCCGAAGAAGCAGGGGAACAACTCATTC
AGGGGTACCTGGGGCTGCGGGGAAGCGGGGGCGAAGGGAAGACCATCACG
GCCACGCCACGCCAGCTGGAATCTTTGATCCGTCTGTCCGAGGCCCTGGC
CAAAATCCGGTTGGCCTCGGTGGTGGAGCGGTCGGACGTGGTGGAAGCCA
TGCGGTTGATGGCGGAGGCCACTTTGAAGGCGGCCACTGACCCGGAGACG
GGGAAATTGGACCTGGGGAACATCGACGGGACAAGCCGGGACCGGGAGGC
GAGGCAGTTGCTGACGGCGGCCGTGAAGGAATTTCTGGAACCGCGGAAAG
GTCTTCGGATGAGCGTGAGCGAGATCCGGCAAGGGGTGCAGGCGCAGAGC
ACGGTCGAAGTCAAGCAGGGATTGCTGGTGGACGTTTTGAGGAAGGAGCT
GGAGCCCGAGGGCGTGGTCAAGTACCTCCCGGCGACCCACACGGTCTTGA
TCCAATAGATGCGGAATTTGAATCCAGAGGATGTGGACCACCTGGTTGCC
TTGCGAGGCATGGTAATTCGCTGCAGCACCATTATTCCCGAGCTCCATTT
GGGGTGTTTCCGCTGCTTTATGTGCGGTTTTGAGGTGCTGGTGGAGAACG
ACCGGGGCCGGATCGAGGAGCCTGTCCGCTGCGAGCATTGCCAGGCCAAG
GAGGCGATGGAGCTGTTGACGAACCGGTGCGCCTACACGAACAAACAGAT
CATCCGGATGCAGGAAACCCCCGACGAAATCCCCGAGGGCGAAACTCCGA
ACAGCCTGACCCTCTTTGCCTTCGACGAGCTCACGGACGCGGTGCGTCCG
GGGGATCGGGTGGAGGTGACGGGGATCTTGCGGGCGGCTCCCCGCCGGGT
CCACCCCCGCTTGACCACGCTCCGCTCCGTGTACAAAACCCACGTGGAAG
CCCTGCATTTCAGTCACGTCGACAAGGACATGAAGGTGGAGGCGGGCCCG
GGGGAAGGCACAGGTCGGTCGGGACTAGCCGGGGGGGACGGCGAAGGGGT
GGGGGTGGGGACGACGGGGTGCGATACTACCCGGATGCGCGGCTTGCACT
TGCCGGCGTCGCGGGTGGCCGAGATCAAGGCCCTGTCCCAAGACCCTTGG
ATCTACGAAAAATTGTCCCGGGCAGTGGCCCCTTCGATTTGGGGGATGGA
GGACGTGAAGAAAGGGGTCCTGTGTTTGTTGTTTGGAGGAACGGACAAGA
AGGCAGGGGCGCGGAAAGAGAGGCGTGGGTGGGAGCGGAGGGCGGGAAGG
AGGGAGAGGGAGGGAGGGAGGGCGGGAGGGAGGGCGGGAGGGAGGGCGGG
CTTGGCCCCGGAAGGGACCGGCCCTGGCATGAACGGCGATAGACGGGAAG
GGGAAGAGGAGGAAGAAGAAGAGGCAGAGGACCCCGGCGCCGTGAGCTGC
CGGGGGGACATCAACATCCTCCTCTGCGGAGATCCGGGGACGAGCAAATC
GCAGATCCTCCTCTACGTGCACAACCTGGCCCCCCGGGGCATCTACACCT
CGGGGAAAGGCTCCTCGGCGGTGGGCCTGACCGCCTCCGTCATCCGGGAC
GTGGAGACGAAGGAGCTGGTCTTGGAGTCGGGGGCATTGGTGTTGAGCGA
CCAAGGGGTCTGCTGCATCGACGAGTTCGACAAGATGAGCGAAACCACCC
GGGCTATCCTCCACGAGGCCATGGAGCAACAGACCGTCTCCATCGCCAAG
GCAGGGATCATCTGCACCCTGAATGCCCGCACGTCCATCTTGGCCTCCGC
CAATCCGGTCGACTCCCGGTACAACCCCCGCTTGTCCGTGGTGGAAAACA
TCCAGTTGCCACCCACCCTCTTGTCCCGCTTCGACCTCATCTACTTGGTC
CTGGACAGCCCGGACGAGGACAAGGACCGGCGTCTGGCGCGGCATTTGAT
CTCGCTCTATTACGAGGAACCTGCCGTCGAGGCCCCGGATGTCGACCACG
CCCTGCTCAAGGACTATATTGCCTACGCGCGCGCCCACGTCTTCCCCGTT
CTCTCCGAAGAAGCAGGGGAACAACTCATTCAGGGGTACCTGGGGCTGCG
GGGAAGCGGGGGCGAAGGGAAGACCATCACGGCCACGCCACGCCAGCTGG
AATCTTTGATCCGTCTGTCCGAGGCCCTGGCCAAAATCCGGTTGGCCTCG
GTGGTGGAGCGGTCGGACGTGGTGGAAGCCATGCGGTTGATGGCGGAGGC
CACTTTGAAGGCGGCCACTGACCCGGAGACGGGGAAATTGGACCTGGGGA
ACATCGACGGGACAAGCCGGGACCGGGAGGCGAGGCAGTTGCTGACGGCG
GCCGTGAAGGAATTTCTGGAACCGCGGAAAGGTCTTCGGATGAGCGTGAG
CGAGATCCGGCAAGGGGTGCAGGCGCAGAGCACGGTCGAAGTCAAGCAGG
GATTGCTGGTGGACGTTTTGAGGAAGGAGCTGGAGCCCGAGGGCGTGGTC
AAGTACCTCCCGGCGACCCACACGGTCTTGATCCAATAGATGCGGAATTT
GAATCCAGAGGATGTGGACCACCTGGTTGCCTTGCGAGGCATGGTAATTC
GCTGCAGCACCATTATTCCCGAGCTCCATTTGGGGTGTTTCCGCTGCTTT
ATGTGCGGTTTTGAGGTGCTGGTGGAGAACGACCGGGGCCGGATCGAGGA
GCCTGTCCGCTGCGAGCATTGCCAGGCCAAGGAGGCGATGGAGCTGTTGA
CGAACCGGTGCGCCTACACGAACAAACAGATCATCCGGATGCAGGAAACC
CCCGACGAAATCCCCGAGGGCGAAACTCCGAACAGCCTGACCCTCTTTGC
CTTCGACGAGCTCACGGACGCGGTGCGTCCGGGGGATCGGGTGGAGGTGA
CGGGGATCTTGCGGGCGGCTCCCCGCCGGGTCCACCCCCGCTTGACCACG
CTCCGCTCCGTGTACAAAACCCACGTGGAAGCCCTGCATTTCAGTCACGT
CGACAAGGACATGAAGGTGGAGGCGGGCCCGGGGGAAGGCACAGGTCGGT
CGGGACTAGCCGGGGGGGACGGCGAAGGGGTGGGGGTGGGGACGACGGGG
TGCGATACTACCCGGATGCGCGGCTTGCACTTGCCGGCGTCGCGGGTGGC
CGAGATCAAGGCCCTGTCCCAAGACCCTTGGATCTACGAAAAATTGTCCC
GGGCAGTGGCCCCTTCGATTTGGGGGATGGAGGACGTGAAGAAAGGGGTC
CTGTGTTTGTTGTTTGGAGGAACGGACAAGAAGGCAGGGGCGCGGAAAGA
GAGGCGTGGGTGGGAGCGGAGGGCGGGAAGGAGGGAGAGGGAGGGAGGGA
GGGCGGGAGGGAGGGCGGGAGGGAGGGCGGGCTTGGCCCCGGAAGGGACC
GGCCCTGGCATGAACGGCGATAGACGGGAAGGGGAAGAGGAGGAAGAAGA
AGAGGCAGAGGACCCCGGCGCCGTGAGCTGCCGGGGGGACATCAACATCC
TCCTCTGCGGAGATCCGGGGACGAGCAAATCGCAGATCCTCCTCTACGTG
CACAACCTGGCCCCCCGGGGCATCTACACCTCGGGGAAAGGCTCCTCGGC
GGTGGGCCTGACCGCCTCCGTCATCCGGGACGTGGAGACGAAGGAGCTGG
TCTTGGAGTCGGGGGCATTGGTGTTGAGCGACCAAGGGGTCTGCTGCATC
GACGAGTTCGACAAGATGAGCGAAACCACCCGGGCTATCCTCCACGAGGC
CATGGAGCAACAGACCGTCTCCATCGCCAAGGCAGGGATCATCTGCACCC
TGAATGCCCGCACGTCCATCTTGGCCTCCGCCAATCCGGTCGACTCCCGG
TACAACCCCCGCTTGTCCGTGGTGGAAAACATCCAGTTGCCACCCACCCT
CTTGTCCCGCTTCGACCTCATCTACTTGGTCCTGGACAGCCCGGACGAGG
ACAAGGACCGGCGTCTGGCGCGGCATTTGATCTCGCTCTATTACGAGGAA
CCTGCCGTCGAG back to top
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