rna3343, rna3343 (mRNA) Nannochloropsis gaditana

Overview
Namerna3343
Unique Namerna3343
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1395
Alignment locationCM002461.1:164787..166272 +

Link to JBrowse

Properties
Property NameValue
ProductNicotinamide N-methyltransferase, putative
Orig transcript idgnl|cribi|Naga_100226g12.10109.mrna
Orig protein idgnl|cribi|Naga_100226g12.10109
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:164787..166272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100226g12gene3219Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3343rna3343-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27339.1cds3334Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3343 ID=rna3343|Name=rna3343|organism=Nannochloropsis gaditana|type=mRNA|length=1395bp
ATGGCTGCTCTTTTTCTTGTTGACGCGGATATAGCGTGGCTCAAGTGCGG
TATTAAGTCGGGCTGGAACCTGGTGGTCCCCACGGAGGGGATCGAAGGTG
GAAAAGGTCTTGTTCCGGAAGACATGGACACGCGAGCAAGGAGGATGAGG
AACCTTGATGAGTGTAGTTCGAAACGTCATGCTCCTGGAAATACGGCATG
CTGCGTCACCCAGCCCGCCTCCCTGCTTCTGACACGCCTCAACGATGATC
TCCTGGCGCGCGTCCTGAGTTTCACGGCCCAGTGGCACGTCATACGCAGC
ATTTCTGGAAGCACACGCACGTTCTCCGATCTTTTGGTCAGGTCCTTGGC
CATCAAACCGCACACTCCCCTCCATGTGCTTCACAGGGTGATGACGCGCG
TAGGTGAGAACGTCCTAGTCTTGGACCTGACTGGCAACCGCCACTTGAAC
GACGCCTCGCTCCGTCACATTCTCGAAGAGACATGCCCGCGTCTTCACCA
TCTCGTCCTCAACTATTGTCGGCAGTTGACTCCGGCTGTGGTTCCGATCC
TGTCCAGGGTTCCACGGGTCGCCGTCCGAGGATGTTGGCGTCTGCTCACG
CCCTCGCCATCCCTTTCCTCCGACGTCGTATTGGAGCTGCAATTGCTGGC
GCTGCAGCAAAACGATCGCCATCGCCACGACGGTGTGGCAAAGTATTTTG
AATTTGCTTCGTCAGCCAACCGGCTGGTAGGGCCGGGCCAAGACGGGGAG
GAGGAAGGGGGGGAGGAGGAGGGGGAAGACACAAAGGGAGGGGGAAGCTC
TGCCGAAGGAAGGGGAAGCATCAGTAGACCCGGAATGTCGACGGGTGGTG
CGTTGAATAACAGGCGCTGCGTGCCGGGAACAGGGGCGGTCGTTGAGGAG
GGAAGGGAGAGCACCACTGAGGGACGTCTACCCTTGCTGAGCCTCCGCGC
TTTCCATGTGGTCTATGATCGGCTTCAGCCTCTGCTTGGCTGTCAGTCCT
TCTCGATACGTCGGCTGCAGTATGAAAGCGTCGATCGTGCCTGTTTTCTC
GTGCGTACGACGGTGAAAAAGGTGGCATCGACAGGGACATCGGCCTCAGT
GTCGATGGCGGCAGGCGATGGCTTTTCCCGACAGCAGCATTATTTGTGGC
TCCTCTCCCGACAGAAAGAAGGGGAATGGAAGAAGTGCTGGCTGACGGAT
GCGATCATATCTGCCGAGCATGGTCTTCTGAGTCTTTGGAACCTGCCTCT
GTGTGAGGAGGGCCGAGGGGAAGATAGGGGTGAACATTGTGTGCAGAAAG
AGATCGAGTCTTCATTGGGCATCACGAAAGATGATCGTGTAAGCTGTCTA
ATACCTTTCCGCGTTGAAAAATGTAACACCAAAACCAGAAAATGA
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protein sequence of rna3343

>rna3343-protein ID=rna3343-protein|Name=rna3343|organism=Nannochloropsis gaditana|type=polypeptide|length=262bp
MNICNTCDRKMVEAAIAMREKLPEQEQHEAQRVSNECSPALSSLSCVSHT
PSSQELTLETQWNVGIGGGIWTTGLLLCEYFGRNATFFSKVLYGKRIIEI
GSGTGLVALSLATNALFKPQEIVVTDQKDHLDLIERNICANIAKMKAPIR
VQEFNWLKDKETKNTDSKVKALCALPFDVVVGTDVAYCQELYGPVVHALC
RLSGPHSLILLGVTRTDTNPRFFQLLQEEGFDYCLTPVADGESSCTVAGG
FALLSVVRRVGS
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mRNA from alignment at CM002461.1:164787..166272+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3343 ID=rna3343|Name=rna3343|organism=Nannochloropsis gaditana|type=mRNA|length=1486bp|location=Sequence derived from alignment at CM002461.1:164787..166272+ (Nannochloropsis gaditana)
TGCCAAGCTGTACAGGTACAATATCGTGTGAAAACACCGGCCTCTATTGC
ACGCACCTCATTTCCACACAAGAAATGAATATCTGTAATACATGTGACAG
GAAGATGGTGGAAGCTGCGATCGCGATGCGGGAAAAACTACcagagcagg
agcagcacgAAGCTCAACGCGTCTCAAACGAGTGCAGCCCAGCACTCTCT
TCATTATCCTGTGTGTCACATACCCCCTCCAGCCAAGAATTAACCTTAGA
GACACAATGGAATGTAGGCATAGGTGGCGGCATATGGACGACAGGTCTTC
TACTTTGCGAGTATTTTGGGCGAAACGCCACTTTTTTTTCCAAAGTCCTG
TATGGCAAACGAATTATGTAAGTCATTCGCCTGCACACAATTGATCGGTG
ACTCGGCGCAAATATTGTATAACAAGCAGTACGGCCGAATGTGTCACACT
TTTTCACGAAGTAGTTTCCGCACTGATACTCAAATAGCGAAATAGGCTCA
GGCACCGGCTTGGTGGCCCTGTCCTTAGCCACCAATGCTCTATTTAAGCC
GCAAGAAATTGTGGTTACAGATCAAAAGGATCATTTGGACCTTATCGAGC
GTAATATTTGTGCCAATATTGCTAAAATGAAGGCTCCGATTCGCGTGCAA
GAATTCAACTGGCTAAAAGATAAAGAGACGAAGAATACTGATAGCAAGGT
AAAAGCCCTCTGTGCCCTCCCTTTTGACGTGGTCGTAGGAACAGATGTAG
CCTACTGCCAAGAGCTTTACGGTCCCGTCGTCCATGCATTGTGTCGTTTG
AGTGGCCCGCATAGCTTGATTTTACTGGGTGTGACACGTACGGACACGAA
CCCGAGGTTTTTCCAGCTACTGCAGGAAGAAGGCTTCGACTACTGTCTCA
CGCCTGTCGCGGATGGAGAGAGCAGCTGCACAGTGGCAGGCGGATTTGCA
CTGCTAAGCGTCGTACGACGAGTGGGATCATGATGCTTATGATGCCCAAG
TCCGACGACAGAGGCATACGTGAAAGCGGAATTTGATAACGAAGATGAAC
GGAAGATCCCAAAAACTGTCTTTAGTGGCACGCGCAGATCAAGGTCATGT
GAAAATGTTGCCGAACAAAAGTAGCTGATTCTCTTCATACCAGCGTCAGT
AGCAGAAGCTCAACGCTTTCAACAGTTCATTTCGGATTCCGTGGCTTATT
TCTTTTATTTCGGAGGTCAAGCTCCACATAACAGCATGGCTGTGTCCCCA
AATCGGTTTTCCTCGTACTTGCTCAGGTCCAGGCTGACCTTGCCTCCTCg
atgctccctctcccactccacCAACTGGCCCATAAACCCCATATTCGGCG
CGATGATCGCGCGTCGACTTCGAGCGTACGTGAGAGCTTCGAGCAGACTC
ATGTCCTTGTTACTGTACATCAGGTAAGCGACAACGACGGCCCCGCTCCT
ACTCATCCCCTTCTTGCAGTGTACCAAACACAAACC
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Coding sequence (CDS) from alignment at CM002461.1:164787..166272+

>rna3343 ID=rna3343|Name=rna3343|organism=Nannochloropsis gaditana|type=CDS|length=1578bp|location=Sequence derived from alignment at CM002461.1:164787..166272+ (Nannochloropsis gaditana)
ATGAATATCTGTAATACATGTGACAGGAAGATGGTGGAAGCTGCGATCGC
GATGCGGGAAAAACTACcagagcaggagcagcacgAAGCTCAACGCGTCT
CAAACGAGTGCAGCCCAGCACTCTCTTCATTATCCTGTGTGTCACATACC
CCCTCCAGCCAAGAATTAACCTTAGAGACACAATGGAATGTAGGCATAGG
TGGCGGCATATGGACGACAGGTCTTCTACTTTGCGAGTATTTTGGGCGAA
ACGCCACTTTTTTTTCCAAAGTCCTGTATGGCAAACGAATTATCGAAATA
GGCTCAGGCACCGGCTTGGTGGCCCTGTCCTTAGCCACCAATGCTCTATT
TAAGCCGCAAGAAATTGTGGTTACAGATCAAAAGGATCATTTGGACCTTA
TCGAGCGTAATATTTGTGCCAATATTGCTAAAATGAAGGCTCCGATTCGC
GTGCAAGAATTCAACTGGCTAAAAGATAAAGAGACGAAGAATACTGATAG
CAAGGTAAAAGCCCTCTGTGCCCTCCCTTTTGACGTGGTCGTAGGAACAG
ATGTAGCCTACTGCCAAGAGCTTTACGGTCCCGTCGTCCATGCATTGTGT
CGTTTGAGTGGCCCGCATAGCTTGATTTTACTGGGTGTGACACGTACGGA
CACGAACCCGAGGTTTTTCCAGCTACTGCAGGAAGAAGGCTTCGACTACT
GTCTCACGCCTGTCGCGGATGGAGAGAGCAGCTGCACAGTGGCAGGCGGA
TTTGCACTGCTAAGCGTCGTACGACGAGTGGGATCATGAATGAATATCTG
TAATACATGTGACAGGAAGATGGTGGAAGCTGCGATCGCGATGCGGGAAA
AACTACcagagcaggagcagcacgAAGCTCAACGCGTCTCAAACGAGTGC
AGCCCAGCACTCTCTTCATTATCCTGTGTGTCACATACCCCCTCCAGCCA
AGAATTAACCTTAGAGACACAATGGAATGTAGGCATAGGTGGCGGCATAT
GGACGACAGGTCTTCTACTTTGCGAGTATTTTGGGCGAAACGCCACTTTT
TTTTCCAAAGTCCTGTATGGCAAACGAATTATCGAAATAGGCTCAGGCAC
CGGCTTGGTGGCCCTGTCCTTAGCCACCAATGCTCTATTTAAGCCGCAAG
AAATTGTGGTTACAGATCAAAAGGATCATTTGGACCTTATCGAGCGTAAT
ATTTGTGCCAATATTGCTAAAATGAAGGCTCCGATTCGCGTGCAAGAATT
CAACTGGCTAAAAGATAAAGAGACGAAGAATACTGATAGCAAGGTAAAAG
CCCTCTGTGCCCTCCCTTTTGACGTGGTCGTAGGAACAGATGTAGCCTAC
TGCCAAGAGCTTTACGGTCCCGTCGTCCATGCATTGTGTCGTTTGAGTGG
CCCGCATAGCTTGATTTTACTGGGTGTGACACGTACGGACACGAACCCGA
GGTTTTTCCAGCTACTGCAGGAAGAAGGCTTCGACTACTGTCTCACGCCT
GTCGCGGATGGAGAGAGCAGCTGCACAGTGGCAGGCGGATTTGCACTGCT
AAGCGTCGTACGACGAGTGGGATCATGA
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Synonyms
Publications