rna3339, rna3339 (mRNA) Nannochloropsis gaditana

Overview
Namerna3339
Unique Namerna3339
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length489
Alignment locationCM002461.1:156053..156680 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100226g5.10112.mrna
Orig protein idgnl|cribi|Naga_100226g5.10112
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:156053..156680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100226g5gene3215Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3339rna3339-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27342.1cds3330Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3339 ID=rna3339|Name=rna3339|organism=Nannochloropsis gaditana|type=mRNA|length=489bp
ATGACGAATGTAATTGGGCCTTCTTCGGCGCAAAGCTCCCCGCAGAGGCG
CCGCCTCAACTCCAACAGTACGGCATCCGCGGCGGAGATGGCAAAGGTTA
CCACGGGGAACAGCGCGGTGCAGGTTGCCACGGCTTTCTTCCGCCAACAG
ATTGATGGCTACCGGGAGAAGCTCCAAAGGTGGGTGGGGAAGAAGGCTCT
GCTAAGGAGGGAGTGTGTGATGACGACGGGGGCGTCTAAACCTGCGGCGA
GGGGCGGGAGCCGGCGGAAGGGCTCCACTTGTGCCTCGGAGGTGTGCAGA
GGCCCGCCCAAGTCTAAGAGGAGGAAGAGGAATGCTCTCTTTTTACGCAC
CATCATCTTCACGCATACGTATATATATATATATATCATACACATGCGGC
TTCACGCTATGCGTACAATATTTGCTGGATTGATACCTGGATATTCTTCT
GCAGATTGCTGTAGTCGATCAGATTACGAAATTTCATGA
back to top

protein sequence of rna3339

>rna3339-protein ID=rna3339-protein|Name=rna3339|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MDGSLGIKGTRSFNSKPPLASFSCQYSWKTARPSCRCLLRSPPCPMVVSG
KGRYFDGHLRHHHGMTSLLTGQTAEPGIKKGEENNRGRGAAVDKRGIFGP
RGVDKGFVSLALQYSWGISGTAQISRHAPHGRRSARSLFYRGQTTRGSRR
ERPGGRRTGLMVILITRTMTMTSTQRRPMGRR
back to top

mRNA from alignment at CM002461.1:156053..156680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3339 ID=rna3339|Name=rna3339|organism=Nannochloropsis gaditana|type=mRNA|length=628bp|location=Sequence derived from alignment at CM002461.1:156053..156680- (Nannochloropsis gaditana)
ATGGACGGCAGTCTGGGAATAAAGGGGACACGAAGCTTTAATAGCAAACC
TCCCCTGGCAAGCTTTTCCTGTCAGTACTGTAAGAAGCCCCCCTCCCATG
CCTAAAAAGGCGCATCAAGTCTCAGCATGGTAAAGACGCCACATCGACCC
ACGGATAGCGTGGAAGACTGCTCGTCCGTCTTGTCGCTGCCTCTTGCGCT
CTCCACCGTGCCCAATGGTGGTATCGGGGAAAGGGAGATATTTCGATGGA
CACCTCCGGCATCACCACGGGATGACAAGTCTCCTCACGGGACAAACGGC
CGAACCAGGCATCAAGAAGGGGGAAGAAAATAATAGAGGAAGAGGAGCCG
CTGTCGACAAACGCGGAATTTTTGGCCCCCGTGGAGTCGATAAAGGATTT
GTTTCGCTTGCCTTGCAGTACTCATGGGGTATCAGTGGCACTGCACAAAT
TTCAAGACACGCTCCTCATGGACGGCGCTCTGCACGAAGTCTATTCTACC
GAGGCCAAACCACGCGAGGAAGCAGGAGGGAACGGCCCGGTGGACGACGC
ACGGGCCTGATGGTCATCCTGATCACCAGGACAATGACGATGACTTCCAC
GCAGAGGAGGCCCATGGGGCGACGTTGA
back to top

Coding sequence (CDS) from alignment at CM002461.1:156053..156680-

>rna3339 ID=rna3339|Name=rna3339|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002461.1:156053..156680- (Nannochloropsis gaditana)
CGTGGAAGACTGCTCGTCCGTCTTGTCGCTGCCTCTTGCGCTCTCCACCG
TGCCCAATGGTGGTATCGGGGAAAGGGAGATATTTCGATGGACACCTCCG
GCATCACCACGGGATGACAAGTCTCCTCACGGGACAAACGGCCGAACCAG
GCATCAAGAAGGGGGAAGAAAATAATAGAGGAAGAGGAGCCGCTGTCGAC
AAACGCGGAATTTTTGGCCCCCGTGGAGTCGATAAAGGATTTGTTTCGCT
TGCCTTGCAGTACTCATGGGGTATCAGTGGCACTGCACAAATTTCAAGAC
ACGCTCCTCATGGACGGCGCTCTGCACGAAGTCTATTCTACCGAGGCCAA
ACCACGCGAGGAAGCAGGAGGGAACGGCCCGGTGGACGACGCACGGGCCT
GATGGTCATCCTGATCACCAGGACAATGACGATGACTTCCACGCAGAGGA
GGCCCATGGGGCGACGTTGAATGGACGGCAGTCTGGGAATAAAGGGGACA
CGAAGCTTTAATAGCAAACCTCCCCTGGCAAGCTTTTCCTGTCAGTACTC
GTGGAAGACTGCTCGTCCGTCTTGTCGCTGCCTCTTGCGCTCTCCACCGT
GCCCAATGGTGGTATCGGGGAAAGGGAGATATTTCGATGGACACCTCCGG
CATCACCACGGGATGACAAGTCTCCTCACGGGACAAACGGCCGAACCAGG
CATCAAGAAGGGGGAAGAAAATAATAGAGGAAGAGGAGCCGCTGTCGACA
AACGCGGAATTTTTGGCCCCCGTGGAGTCGATAAAGGATTTGTTTCGCTT
GCCTTGCAGTACTCATGGGGTATCAGTGGCACTGCACAAATTTCAAGACA
CGCTCCTCATGGACGGCGCTCTGCACGAAGTCTATTCTACCGAGGCCAAA
CCACGCGAGGAAGCAGGAGGGAACGGCCCGGTGGACGACGCACGGGCCTG
ATGGTCATCCTGATCACCAGGACAATGACGATGACTTCCACGCAGAGGAG
GCCCATGGGGCGACGTTGAATGGACGGCAGTCTGGGAATAAAGGGGACAC
GAAGCTTTAATAGCAAACCTCCCCTGGCAAGCTTTTCCTGTCAGTACT
back to top
Synonyms
Publications