rna3337, rna3337 (mRNA) Nannochloropsis gaditana

Overview
Namerna3337
Unique Namerna3337
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1633
Alignment locationCM002461.1:153086..155362 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100226g2.10107.mrna
Orig protein idgnl|cribi|Naga_100226g2.10107
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:153086..155362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100226g2gene3213Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3337rna3337-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27337.1cds3328Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3337 ID=rna3337|Name=rna3337|organism=Nannochloropsis gaditana|type=mRNA|length=1633bp
GGAATCGATGAAAGGGATGGAGGGAAATGCAAACGGGGAGGCGACTGCGA
GGGAGGGAGGAGAGGTGTCGGGAGGGGAGGAGGGTTCGAAGATTGCCTTC
GGCTCCATTCTCATTACTCCCAGGAAGGGAGGAGGGGACGAGCGGAAAGA
GGTGGAGAAATGAGAGAAATGACATATCCGGGATGAGGCAGGAAAAGCGG
AGGAGGCGGAGAGCAGGGAGGGAGGGAGCGAGGACGAGGAGGAGGAGGAG
GGCGGAGGTCGGTCAGTCACGATGGTGATGGCGCAGGTCCTGGGCTTAAA
GAAGAAGCTTCTGGTCACGTTGACGCACCTCCTCCGCCTCCACATTCATC
AACACGAATCTCCTCTCGATCTTCCAGTGCTGCGTCGGGCCGTGCAGGAG
GTGATACACTCACACGGTGATCGGGGAAGGGAGGGAGGGAGGGAAGGAGG
AAGAGAGGTAGGGACGGAAGGAAGCGCTCAGTTGGATCCAGGCAGCGACA
CGATCGCTGTGGTCCTTGGCAGCGGAGGTGGTGCATGCCACCTTGACGAG
GATGCGAAGGGAGGGAGAGCGGGAGGCAGGGAGGAAGGGAGGGAGGAAGA
GGGACGGAGCCGATGGAGGAGGCGGTCCTGGACCTACTGAGGGACATGGG
GGAAGCCCTCGGTCCCATCGTAAGAACGAGCCTTCCTCTTCCTCCTCCTC
CCCTTCCTCCTTCCCTCCCCTGCTTCCTCAAGCAAGCCCATGCCTTCGCC
CAGGTCTGGCATTCCCTCCTCTCCTCCTCCCTCCGCGACCTCTCCTTCCT
TCACCTCCACCCCTCCTCGCCCTCCCTCCTCCTCAACGACCGTTCACCGT
TCCCTTCACCTCATCCTTGCTACACCTCCCTTTTTCCACACCCACAAACT
CCTCTTGGTTGCCCTGACGTTGACACACGCCCATGCCGTGTCCTTGGGTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTACCGA
CGAGGAGGACTGGCGTCGTTTTGGGAGTGCGTGCAATGACGTGGCTTCTT
CGATCAAGGATACCTTAAGCCACCTCCTCCTCCCCGCCCCCTCACCTCCT
CCATCCTCCGCCCCTCCCCCGACGCCCTCCGTCCCCATCACTCCCGCAAG
CGAGGGAGAGGCTGAAGAAGCTGAGGAAGAGGACCCGCCCCCCTCTTTCC
CTCCTTCTCCGCCTCCCTCCCCCTCCTCCCTCCCTACCCTCCACTGTGCC
ATGGGCGTTCGAGAGTGGTGCCTCGCTTCCCGCACCTGCTTCCTCCTCCT
CCACGACCATCAGGACGCCCCGCTCGTCTCCCTGAACCTCCTGGTTTCTG
CCAACTCGCTGCCTCCGCCCCCTCCCTCCCTCCCTTTTCCCCTCCCTCCT
CCTCAAGCCTCCAGCGGTAGGAATGGTGGTGGAGCCAGGCCCTTGCCTAC
GCGAATGAGGCTCATGCGGTGCTTGAGGGGAGTTGAATTGAGGGGGGGAG
GGAGGGAGGGAGGGGAGCGTATGGTTGGAAGAGAAAGCAAAAAAGAGGAA
GTGAAAAAGCGGGGTAGACGAGGCACGACCTCAGACGAAAGAGGCAGGAA
GGACATGGAAAGAAGGGAGGGAGAGAGGGAGGA
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protein sequence of rna3337

>rna3337-protein ID=rna3337-protein|Name=rna3337|organism=Nannochloropsis gaditana|type=polypeptide|length=432bp
MLAARRAFARIIVLSVVVVLLVWFVQTDVSYVGVLLSTSTPISRGNAASS
CCHRCTESQGEVIYQGGAEWKRYGDPTPPRPPEPVWQLFEQPGHPYVFAD
SLGPNSTLKMFRECCVCPVHQIGRVLILVSETRDLLLGVDPNTTVAQLSY
PAKTAIMNKQYADAHGYDFVYSRPGVTATFREMMWAALEKESKASDCKFA
APLWHFNRSSLRSAPWAKLPAAWHFALEYDWIVSIDSDAVFRNMSWKLPQ
SLAALRPDQDYLFLSNMPFSYMMPCSGVFVVRGGDRGRKRLETWWNTISQ
TDRRHAYEQTALWQRITPQTWAGTQYDADFANAGVRIDVAQFYRSGGYWP
VSKPHSWIVHVGSTELVGRASIFDGILEERNISLQARALPLLQQIPTALI
NGNAVALDMEKFNSANVSNWLEGTLDSVCTSR
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mRNA from alignment at CM002461.1:153086..155362+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3337 ID=rna3337|Name=rna3337|organism=Nannochloropsis gaditana|type=mRNA|length=2277bp|location=Sequence derived from alignment at CM002461.1:153086..155362+ (Nannochloropsis gaditana)
ACAAGTCTAGGCACGAGGGAAAAAGTCTGGCCACGAGGGGAAATGTAGGA
AATTTTGTTTTACAGGTAATAGGGTTCTATGTGCGTATTTCCGTCAAACC
ATTTGTCTGAGTTTGATTCCTATTGAATCTGAGAAATGCCTGTGCGAGTG
AAGCGTTTTATTCCGACCCCAGTCCCTCAGGTTTCTAGGTCCATGTACCA
CATGGCAGACTATCCCAAAAGTACTACGACAGCCCCTCAAATCTTTTGCT
CTGTGGAACTCAACGAGAATAATTCAATTTCGATTCAACTTTTCTGCAGG
GCGGAATTCACTCCAGGTTTTTCCAGGTTTTAATCTCCCTTCGCCGCCAT
TTAACCTGTGGGAGTACTCGCTCACATGAGAATGTATCGGAACGCTTTAT
AAGAAAGCTCGCTTCATGTTAGCGGCACGCCGAGCTTTTGCTAGAATCAT
TGTGCTCAGTGTTGTAGTGGTGCTACTCGTATGGTTCGTCCAAACGGATG
TGAGCTATGTTGGCGTTCTGCTGAGCACCTCGACACCCATTTCGAGAGGT
AATGCTGCGAGTAGCTGTTGCCACCGGTGCACGGAGAGTCAGGGTGAAGT
GATATACCAAGGCGGTGCAGAATGGAAACGGTATGGCGACCCAAcgccac
cacgtcctccggaGCCGGTATGGCAGCTATTCGAACAGCCTGGGCATCCA
TACGTCTTCGCAGACAGTCTAGGGCCTAATTCGACTCTGAAAATGTTCCG
AGAGTGCTGTGTATGCCCTGTTCACCAGATAGGGCGGGTTCTTATCTTGG
TCTCTGAGACGCGTGATTTATTATTGGGTGTTGATCCCAACACAACAGTT
GCCCAGCTCTCTTATCCCGCGAAAACCGCAATCATGAACAAACAGTACGC
GGATGCGCATGGCTACGATTTTGTGTATTCAAGGCCTGGAGTGACAGCTA
CGTTTCGGGAAATGATGTGGGCTGccttggaaaaggagagTAAAGCTTCA
GATTGCAAATTTGCTGCCCCTCTCTGGCATTTCAATAGAAGCTCATTGCG
GTCCGCACCATGGGCAAAGCTGCCAGCAGCTTGGCATTTCGCATTGGAAT
ATGATTGGATTGTGTCGATTGACTCCGATGCAGTATTTCGTAACATGAGT
TGGAAATTGCCGCAGAGCTTGGCTGCATTGAGACCCGACCAGGACTATCT
GTTCTTGTCCAATATGCCGTTTTCTTACATGATGCCGTGCTCAGGGGTTT
TTGTGGTGCGGGGCGGTGATCGTGGAAGGAAACGACTGGAGACGTGGTGG
AACACCATATCACAAACTGATCGAAGGCATGCGTATGAACAAACTGCGCT
TTGGCAGCGCATCACTCCTCAAACGTGGGCAGGGACTCAGTACGATGCTG
ACTTCGCGAATGCAGGAGTCAGAATTGATGTTGCTCAGTTTTACCGTTCC
GGTGGATACTGGCCTGTATCAAAGCCGCACAGTTGGATTGTGCATGTGGG
CTCGACGGAGCTCGTGGGAAGAGCGTCAATCTTTGATGGCATCTTGGAGG
AACGGAACATAAGCCTGCAGGCCCGCGCATTGCCCCTACTGCAGCAAATC
CCAACCGCGCTCATTAACGGCAATGCTGTTGCTTTGGACATGGAGAAGTT
CAACTCAGCCAACGTCTCCAACTGGCTTGAAGGTACCCTGGACTCAGTAT
GCACGTCAAGATAGTCAACTGCGAGCTCGTCGCATATCCGGTTTATGTGA
GTTGTCAGGGGTTTAAATCAAGTCTATGAATAAGTGCTTCAAAAGGTGCA
AGAGCGTGCCGTGGAGGAACGTCTGCAATGGATCGCCTTTCTCGATACTG
ACGACTTCGTCCTATCTTCAATTCCCAGTGAGAGATTATCCGAAACCCTC
AACGAGAATTAAGTGGAGGAAGCATGCTTAAGGATACATCGAACCTGGTG
TGGGTCATTCCAGCATAAGAAGGCTTGGCATCCAGTGACTGCGGCGACAG
CATCGCAAATCCCAAAGTACTCGCAAACATTCACccggaagaaaaaaaca
tAAATGCAATAGCGCTCAAGGTTATCCATGCTTTTGTAGATCAAGACAGG
ATTCCGTGCAAGAGTCAGTGAGACATAAGAGATATCCGCATCAACGCGAA
AATTGCTTTGTTATCAAACGTCTCGGAGAAGGGTTTGCTTACGATACCTA
TACGTCATGCAACCTTCGCGGGACGGCGACCTTTTCCTTTGTTAAAAAAT
ATGCCTATGGTGATGCGAGGAGTCCAA
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Coding sequence (CDS) from alignment at CM002461.1:153086..155362+

>rna3337 ID=rna3337|Name=rna3337|organism=Nannochloropsis gaditana|type=CDS|length=1299bp|location=Sequence derived from alignment at CM002461.1:153086..155362+ (Nannochloropsis gaditana)
ATGTTAGCGGCACGCCGAGCTTTTGCTAGAATCATTGTGCTCAGTGTTGT
AGTGGTGCTACTCGTATGGTTCGTCCAAACGGATGTGAGCTATGTTGGCG
TTCTGCTGAGCACCTCGACACCCATTTCGAGAGGTAATGCTGCGAGTAGC
TGTTGCCACCGGTGCACGGAGAGTCAGGGTGAAGTGATATACCAAGGCGG
TGCAGAATGGAAACGGTATGGCGACCCAAcgccaccacgtcctccggaGC
CGGTATGGCAGCTATTCGAACAGCCTGGGCATCCATACGTCTTCGCAGAC
AGTCTAGGGCCTAATTCGACTCTGAAAATGTTCCGAGAGTGCTGTGTATG
CCCTGTTCACCAGATAGGGCGGGTTCTTATCTTGGTCTCTGAGACGCGTG
ATTTATTATTGGGTGTTGATCCCAACACAACAGTTGCCCAGCTCTCTTAT
CCCGCGAAAACCGCAATCATGAACAAACAGTACGCGGATGCGCATGGCTA
CGATTTTGTGTATTCAAGGCCTGGAGTGACAGCTACGTTTCGGGAAATGA
TGTGGGCTGccttggaaaaggagagTAAAGCTTCAGATTGCAAATTTGCT
GCCCCTCTCTGGCATTTCAATAGAAGCTCATTGCGGTCCGCACCATGGGC
AAAGCTGCCAGCAGCTTGGCATTTCGCATTGGAATATGATTGGATTGTGT
CGATTGACTCCGATGCAGTATTTCGTAACATGAGTTGGAAATTGCCGCAG
AGCTTGGCTGCATTGAGACCCGACCAGGACTATCTGTTCTTGTCCAATAT
GCCGTTTTCTTACATGATGCCGTGCTCAGGGGTTTTTGTGGTGCGGGGCG
GTGATCGTGGAAGGAAACGACTGGAGACGTGGTGGAACACCATATCACAA
ACTGATCGAAGGCATGCGTATGAACAAACTGCGCTTTGGCAGCGCATCAC
TCCTCAAACGTGGGCAGGGACTCAGTACGATGCTGACTTCGCGAATGCAG
GAGTCAGAATTGATGTTGCTCAGTTTTACCGTTCCGGTGGATACTGGCCT
GTATCAAAGCCGCACAGTTGGATTGTGCATGTGGGCTCGACGGAGCTCGT
GGGAAGAGCGTCAATCTTTGATGGCATCTTGGAGGAACGGAACATAAGCC
TGCAGGCCCGCGCATTGCCCCTACTGCAGCAAATCCCAACCGCGCTCATT
AACGGCAATGCTGTTGCTTTGGACATGGAGAAGTTCAACTCAGCCAACGT
CTCCAACTGGCTTGAAGGTACCCTGGACTCAGTATGCACGTCAAGATAG
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Synonyms
Publications