rna3336, rna3336 (mRNA) Nannochloropsis gaditana

Overview
Namerna3336
Unique Namerna3336
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2705
Alignment locationCM002461.1:151081..152713 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100226g1.10106.mrna
Orig protein idgnl|cribi|Naga_100226g1.10106
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:151081..152713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100226g1gene3212Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27336.1cds3327Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3336rna3336-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3336 ID=rna3336|Name=rna3336|organism=Nannochloropsis gaditana|type=mRNA|length=2705bp
GGCGAGAGAGAACACGATGGCCGAGGGCGGACTGGAAGGGGCTTGCGCTA
CCTCCCTAGCCACAAGAGGGGGCACGCTGACAGATAAAGAGGAGAGGGCC
GGGACGAGAAATACCCTTTCACTCACTCAGCCTTCAGAGGGGAGGGAGGC
AGGGGCCGGGACGAGAAACACCCCTCCATTCACTCAGCCTTCAGAGGGGA
GGGAGGCAGGGGCCGGGACGAGAAACACCCTTCCAGTCACTCTCTCTCTC
TCTTCAGAGGGGAGGGAGGCAGGGGCCGGGACGAGAAACACCCCTTCGCC
CACTCAGCCTTCGCCACCCTCCTCGCCAAGGGGACGGCCCTGCTGCACCA
CGCGATCGGCGTCGGCTGCTACCAAGCGGTCTTTCCCCTCCTGTCCTCCC
TCCTCCTCGCCCTTCTCCCTGGCCTCCACCTTAACCCGCGCTTAAGAATC
CTCCGCCCTCCTCCCCCTCACTCAGGCCCTCTCCCTCTACGCGCAGCTCC
CTGCCGAGGAAGGGCGGCTTGCGGCAGTTCACTCCCAGGTGGGCTCATTC
TATGCCCGACCTGGACGGGGCAACGGGAAAAAAAAGGCGCGAGATTTCAT
GGGCCGAGCGCTCTTTCAGTACAACCAAGCGTTTGGCTTCTACAAGCGGA
TGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGAGGGTCCACGA
TGTGGTCGATTGTGATAGAGCTGGCAGCTTTCTTGGAGGTGGTCGGTTGT
GCAGAAGGTGCACGGGTGGGGGAGGGAGGAGGGGGAGGGGGAGAGAAAGG
AAGAAGGAGGGGAGGGAGGGGAAGGGAGGGTCTGTCTTTGGCAAGCGCTG
GAGTGTCTATTGAAGGGGCGATGTGTCGTTGAGGATGAGGAGGGACAGAC
AGACAATGAGAAAGAGGAAGGAGGAGTGCCGTCCTTTCCCTCTCAAGATG
ACAGGGAGGAGCTACAAGCACGATTACAGAGGATTTTGATGGCGCTCTTA
AGAAAGAGTGGGGGAACGTGCGGGGAGGAGGAGAGGAGGTTAAAAGGGAT
GTACAGACTCGTCCTGGAAGGACAGAAAGGCCAGCTTCGATGGGGCAGGA
AGGCGATGGACGGCTTGTGGACGCTGTATGTTGGTGAATCGTAGGCTTAG
ATATGAGCGTGGAAAATGAGTCAATCTGTTTGTCTTTGTGGGCCCTCGCC
TGTCCGTAAAGGCGACGCCGTGTGATCCAATGCATGCCGCAGACTAAAGG
GAATCCACTTTCAAGAAGTGATGACAGGAATCAACATTGAAACCTTAATC
TGCCCAGTGGTATACACAATATTTTAGACCTGATAACGCAGCGAGGGAGA
CAACGCAGAGACGCTCTGACTTCGTTTGTCTGTGGCTCGTGCTGAGAGGC
CATACTCAGGGAGCAGCATGTCATTGTGCCCTACACCATCTGCCTCATCT
TAGCCTCTGGTTGCTTCCTTTCTTCCATGTGGATGTGACCACATCTTCTA
TGTCATGAACAGGGAAAGGCCCCTGATGCGTGTTTCAAATGCGCGTCGTC
TTTGGCGTGATATCAGAAAGGGGTGGGGAGGTCTTTGTGACAAGAGTAAA
AAAGGAGGGTCCTAGTGGACGGAAGACGGGGAACTAAGAGCAGAGTGCCA
GCAAAGAAATGCGTAAAGCAATCTATGATACGGCTGAGGAAAGTGTTGAA
TCAGTAGGGCTACGTGTATGTTCGTGGCTGGTTTGGGGGGTTATTTTTCC
TTCGTCCTCAAGTCGCCCTGACACGTGAGCGGCAACGCCACGCCGACGCG
GCTATTCGAGCGTTGTGACCAGAGCACAATGATACCATGACTCCACCGCC
ACTGTACTTCCCTTCTTTGACTACTTTACTACGTATTTTCTACCCGCAGC
AAGCGCCGTTTCATTTTCATACCTGCCTGGTTTGTGTTCTTCTTGCAATG
CAACTTGAAGGCTTGAAGTATCCTGTAGAAAGCAAAAAAGCTCCTTGGGC
GGTATCCGTTTCTTTCTCAATCATCATGCTGGCAATTTTTCGAATTAAAA
TCCCACAGGACAATTCAGAGAAGTGATGTCCTTGGCGTGCTTGCGCAGTT
GCCTTTTCTTTGGGAGCCCTTTTCTGACATGCAGGGCGGCGGGCGGGAAG
CACGAGTGGGATGAAGAGGAGGAGGAAGCTGCAGAGCAAGAAGATGAAGA
GGAGCGAGTGGAAGCAGGAAGCGACCAGGACATTGCCTACCGCTACTACG
ACGACTGTCAGCAACGCCAGTACCGTCAAGCCTTGACAAGCACCACCCGC
AGTCGTTCTGCTCGGGCATCACGAGCGCAAGCAGCAGCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCG
CTTTTTCCTCTCCCCTCCAATCCACTCATCGACCCGCCGCCATCGTTGCC
CTAAGCGGCTGGGAAGGCCTGTTCGACGACACTGAATATTCTCCTCTGCC
CTCTGACGCACTTGGCTCGCGGCACCATCCTCAAACACGTCCTCCCCGCC
CCCCCCGCCTCACCTCCCCCTCCCCCTCCCCCTCCCCCTCCATCCCCACC
TCCCCCCATCCCTGCCTCCCGCTTCCTCGCACTCCCCTCCATCACCGTCC
TCATCGTTTGTATCCGGGGGGGGGGGGCATGTCTGACCTCCACCCCACGG
CATGG
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protein sequence of rna3336

>rna3336-protein ID=rna3336-protein|Name=rna3336|organism=Nannochloropsis gaditana|type=polypeptide|length=233bp
MPCPWVPSLPPSLPPSLPPSFTDEEDWRRFGSACNDVASSIKDTLSHLLL
PAPSPPPSSAPPPTPSVPITPASEGEAEEAEEEDPPPSFPPSPPPSPSSL
PTLHCAMGVREWCLASRTCFLLLHDHQDAPLVSLNLLVSANSLPPPPPSL
PFPLPPPQASSGRNGGGARPLPTRMRLMRCLRGVELRGGGREGGERMVGR
ESKKEEVKKRGRRGTTSDERGRKDMERREGERE
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mRNA from alignment at CM002461.1:151081..152713-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3336 ID=rna3336|Name=rna3336|organism=Nannochloropsis gaditana|type=mRNA|length=1633bp|location=Sequence derived from alignment at CM002461.1:151081..152713- (Nannochloropsis gaditana)
GGAATCGATGAAAGGGATGGAGGGAAATGCAAACGGGGAGGCGACTGCGA
GGGAGGGAGGAGAGGTGTCGGGAGGGGAGGAGGGTTCGAAGATTGCCTTC
GGCTCCATTCTCATTACTCCCAGGAAGGGAGGAGGGGACGAGCGGAAAGA
GGTGGAGAAATGAGAGAAATGACATATCCGGGATGAGGCAGGAAAAGCGG
AGGAGGCGGAGAGCAGGGAGGGAGGGAGCGAGGACGAGGAGGAGGAGGAG
GGCGGAGGTCGGTCAGTCACGATGGTGATGGCGCAGGTCCTGGGCTTAAA
GAAGAAGCTTCTGGTCACGTTGACGCACCTCCTCCGCCTCCACATTCATC
AACACGAATCTCCTCTCGATCTTCCAGTGCTGCGTCGGGCCGTGCAGGAG
GTGATACACTCACACGGTGATCGGGGAAGGGAGGGAGGGAGGGAAGGAGG
AAGAGAGGTAGGGACGGAAGGAAGCGCTCAGTTGGATCCAGGCAGCGACA
CGATCGCTGTGGTCCTTGGCAGCGGAGGTGGTGCATGCCACCTTGACGAG
GATGCGAAGGGAGGGAGAGCGGGAGGCAGGGAGGAAGGGAGGGAGGAAGA
GGGACGGAGCCGATGGAGGAGGCGGTCCTGGACCTACTGAGGGACATGGG
GGAAGCCCTCGGTCCCATCGTAAGAACGAGCCTTCCTCTTCCTCCTCCTC
CCCTTCCTCCTTCCCTCCCCTGCTTCCTCAAGCAAGCCCATGCCTTCGCC
CAGGTCTGGCATTCCCTCCTCTCCTCCTCCCTCCGCGACCTCTCCTTCCT
TCACCTCCACCCCTCCTCGCCCTCCCTCCTCCTCAACGACCGTTCACCGT
TCCCTTCACCTCATCCTTGCTACACCTCCCTTTTTCCACACCCACAAACT
CCTCTTGGTTGCCCTGACGTTGACACACGCCCATGCCGTGTCCTTGGGTT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTACCGA
CGAGGAGGACTGGCGTCGTTTTGGGAGTGCGTGCAATGACGTGGCTTCTT
CGATCAAGGATACCTTAAGCCACCTCCTCCTCCCCGCCCCCTCACCTCCT
CCATCCTCCGCCCCTCCCCCGACGCCCTCCGTCCCCATCACTCCCGCAAG
CGAGGGAGAGGCTGAAGAAGCTGAGGAAGAGGACCCGCCCCCCTCTTTCC
CTCCTTCTCCGCCTCCCTCCCCCTCCTCCCTCCCTACCCTCCACTGTGCC
ATGGGCGTTCGAGAGTGGTGCCTCGCTTCCCGCACCTGCTTCCTCCTCCT
CCACGACCATCAGGACGCCCCGCTCGTCTCCCTGAACCTCCTGGTTTCTG
CCAACTCGCTGCCTCCGCCCCCTCCCTCCCTCCCTTTTCCCCTCCCTCCT
CCTCAAGCCTCCAGCGGTAGGAATGGTGGTGGAGCCAGGCCCTTGCCTAC
GCGAATGAGGCTCATGCGGTGCTTGAGGGGAGTTGAATTGAGGGGGGGAG
GGAGGGAGGGAGGGGAGCGTATGGTTGGAAGAGAAAGCAAAAAAGAGGAA
GTGAAAAAGCGGGGTAGACGAGGCACGACCTCAGACGAAAGAGGCAGGAA
GGACATGGAAAGAAGGGAGGGAGAGAGGGAGGA
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Coding sequence (CDS) from alignment at CM002461.1:151081..152713-

>rna3336 ID=rna3336|Name=rna3336|organism=Nannochloropsis gaditana|type=CDS|length=701bp|location=Sequence derived from alignment at CM002461.1:151081..152713- (Nannochloropsis gaditana)
ATGCCGTGTCCTTGGGTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCTTTACCGACGAGGAGGACTGGCGTCGTTTTGGGAGTGCGT
GCAATGACGTGGCTTCTTCGATCAAGGATACCTTAAGCCACCTCCTCCTC
CCCGCCCCCTCACCTCCTCCATCCTCCGCCCCTCCCCCGACGCCCTCCGT
CCCCATCACTCCCGCAAGCGAGGGAGAGGCTGAAGAAGCTGAGGAAGAGG
ACCCGCCCCCCTCTTTCCCTCCTTCTCCGCCTCCCTCCCCCTCCTCCCTC
CCTACCCTCCACTGTGCCATGGGCGTTCGAGAGTGGTGCCTCGCTTCCCG
CACCTGCTTCCTCCTCCTCCACGACCATCAGGACGCCCCGCTCGTCTCCC
TGAACCTCCTGGTTTCTGCCAACTCGCTGCCTCCGCCCCCTCCCTCCCTC
CCTTTTCCCCTCCCTCCTCCTCAAGCCTCCAGCGGTAGGAATGGTGGTGG
AGCCAGGCCCTTGCCTACGCGAATGAGGCTCATGCGGTGCTTGAGGGGAG
TTGAATTGAGGGGGGGAGGGAGGGAGGGAGGGGAGCGTATGGTTGGAAGA
GAAAGCAAAAAAGAGGAAGTGAAAAAGCGGGGTAGACGAGGCACGACCTC
AGACGAAAGAGGCAGGAAGGACATGGAAAGAAGGGAGGGAGAGAGGGAGG
A
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Synonyms
Publications