rna3328, rna3328 (mRNA) Nannochloropsis gaditana

Overview
Namerna3328
Unique Namerna3328
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length237
Alignment locationCM002461.1:130222..130984 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101048g2.716.mrna
Orig protein idgnl|cribi|Naga_101048g2.716
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:130222..130984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101048g2gene3204Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3328rna3328-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27355.1cds3319Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3328 ID=rna3328|Name=rna3328|organism=Nannochloropsis gaditana|type=mRNA|length=237bp
ATGAATGAAGGGCCATACTCGACTTCTACCCAAACCAGACATTTCACACA
TGCGATTGTGAGGAGTCACAAACACTTCTCAATAATTGCTAAAACCGCAT
CTCAAGTCGATGGCAAAGACTACATCCATGTCTCGCTGTTGGAATGGAAG
AGAAAACTTCGGAAGGGACAAGAACCACGGTTGCCGTTCATAATACTGTG
GTCACGTAATCTCTATCAACTATACGATGGAAGGTAA
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protein sequence of rna3328

>rna3328-protein ID=rna3328-protein|Name=rna3328|organism=Nannochloropsis gaditana|type=polypeptide|length=191bp
MEISGVSSEPQSQYKQFNDRNQFLKQPDKQEWIWFIKYKAVARIAVAVSP
NGQVFRILELAVHLEKSTKWEHRDSDVGISRRNLGHRSSGGHLGVPVSQG
GKDRLWDRHSCRLKGRLGRKRCHIGDVPGGKQFYHFLSTSVRTTQASYGC
LIEMSVRMQQVGGGKARREKGGREEAKKGYEEKEIVAFKTP
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mRNA from alignment at CM002461.1:130222..130984+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3328 ID=rna3328|Name=rna3328|organism=Nannochloropsis gaditana|type=mRNA|length=763bp|location=Sequence derived from alignment at CM002461.1:130222..130984+ (Nannochloropsis gaditana)
ATGGAAATAAGCGGAGTGTCGAGCGAACCACAGAGCCAATACAAGCAGTT
TAATGATCGCAACCAGTTTTTAAAGCAACCAGGTTGCGGGGCAGACGCGA
AACGGTAACCGTCCCCGCATTGATCGATCACACCACGGGCAAGAATTGAT
CACAACCGAGCAAGGACCCCTCACACCAAAGCAATGATCGGTCACAGACA
AGCAAGAGTGGATTTGGTTTATTAAGTACAAGGCAGTAGCGCGCATCGCG
GTTGCTGTGTCACCAAACGGTCAAGTCTTCAGAATCCTGGAGCTTGCTGT
CCACCTGTGCCTGTCTCGGGGCTGAATCGAGGGGGTAGGGGCCCGGTAGC
GGTGCCCCTGGCAGCGTTGCATCCCCAGGGAAAAATCTACAAAATGGGAG
CACAGAGATTCAGACGTGGGGATAAGCAGAAGGAACCTCGGCCATCGATC
TTCCGGTGGTCATCTTGGCGTCCCTGTAAGCCAGGGGGGTAAAGATCGGC
TTTGGGACCGTCATTCCTGTCGGCTCAAGGGTCGACTGGGGCGGAAACGA
TGCCATATCGGAGATGtaccgggggggaagcagtTTTATCACTTCTTGAG
CACTTCCGTACGAACTACCCAGGCGTCATACGGTTGTTTGATCGAAATGT
CTGTCCGCATGCAAcaagtcggaggaggaaaggctagaagggagaaagga
ggaagggaagaggcgaagaaaggctatgaggaaaaagaaatagTGGCATT
TAAAACCCCATAA
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Coding sequence (CDS) from alignment at CM002461.1:130222..130984+

>rna3328 ID=rna3328|Name=rna3328|organism=Nannochloropsis gaditana|type=CDS|length=1728bp|location=Sequence derived from alignment at CM002461.1:130222..130984+ (Nannochloropsis gaditana)
ATGGAAATAAGCGGAGTGTCGAGCGAACCACAGAGCCAATACAAGCAGTT
TAATGATCGCAACCAGTTTTTAAAGCAACCAGACAAGCAAGAGTGGATTT
GGTTTATTAAGTACAAGGCAGTAGCGCGCATCGCGGTTGCTGTGTCACCA
AACGGTCAAGTCTTCAGAATCCTGGAGCTTGCTGTCCACCTGGAAAAATC
TACAAAATGGGAGCACAGAGATTCAGACGTGGGGATAAGCAGAAGGAACC
TCGGCCATCGATCTTCCGGTGGTCATCTTGGCGTCCCTGTAAGCCAGGGG
GGTAAAGATCGGCTTTGGGACCGTCATTCCTGTCGGCTCAAGGGTCGACT
GGGGCGGAAACGATGCCATATCGGAGATGtaccgggggggaagcagtTTT
ATCACTTCTTGAGCACTTCCGTACGAACTACCCAGGCGTCATACGGTTGT
TTGATCGAAATGTCTGTCCGCATGCAAcaagtcggaggaggaaaggctag
aagggagaaaggaggaagggaagaggcgaagaaaggctatgaggaaaaag
aaatagTGGCATTTAAAACCCCATAAATGGAAATAAGCGGAGTGTCGAGC
GAACCACAGAGCCAATACAAGCAGTTTAATGATCGCAACCAGTTTTTAAA
GCAACCAGACAAGCAAGAGTGGATTTGGTTTATTAAGTACAAGGCAGTAG
CGCGCATCGCGGTTGCTGTGTCACCAAACGGTCAAGTCTTCAGAATCCTG
GAGCTTGCTGTCCACCTGGAAAAATCTACAAAATGGGAGCACAGAGATTC
AGACGTGGGGATAAGCAGAAGGAACCTCGGCCATCGATCTTCCGGTGGTC
ATCTTGGCGTCCCTGTAAGCCAGGGGGGTAAAGATCGGCTTTGGGACCGT
CATTCCTGTCGGCTCAAGGGTCGACTGGGGCGGAAACGATGCCATATCGG
AGATGtaccgggggggaagcagtTTTATCACTTCTTGAGCACTTCCGTAC
GAACTACCCAGGCGTCATACGGTTGTTTGATCGAAATGTCTGTCCGCATG
CAAcaagtcggaggaggaaaggctagaagggagaaaggaggaagggaaga
ggcgaagaaaggctatgaggaaaaagaaatagTGGCATTTAAAACCCCAT
AAATGGAAATAAGCGGAGTGTCGAGCGAACCACAGAGCCAATACAAGCAG
TTTAATGATCGCAACCAGTTTTTAAAGCAACCAGACAAGCAAGAGTGGAT
TTGGTTTATTAAGTACAAGGCAGTAGCGCGCATCGCGGTTGCTGTGTCAC
CAAACGGTCAAGTCTTCAGAATCCTGGAGCTTGCTGTCCACCTGGAAAAA
TCTACAAAATGGGAGCACAGAGATTCAGACGTGGGGATAAGCAGAAGGAA
CCTCGGCCATCGATCTTCCGGTGGTCATCTTGGCGTCCCTGTAAGCCAGG
GGGGTAAAGATCGGCTTTGGGACCGTCATTCCTGTCGGCTCAAGGGTCGA
CTGGGGCGGAAACGATGCCATATCGGAGATGtaccgggggggaagcagtT
TTATCACTTCTTGAGCACTTCCGTACGAACTACCCAGGCGTCATACGGTT
GTTTGATCGAAATGTCTGTCCGCATGCAAcaagtcggaggaggaaaggct
agaagggagaaaggaggaagggaagaggcgaagaaaggctatgaggaaaa
agaaatagTGGCATTTAAAACCCCATAA
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Synonyms
Publications