rna3326, rna3326 (mRNA) Nannochloropsis gaditana

Overview
Namerna3326
Unique Namerna3326
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length846
Alignment locationCM002461.1:127668..128098 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103583g1.1876.mrna
Orig protein idgnl|cribi|Naga_103583g1.1876
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:127668..128098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103583g1gene3202Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27356.1cds3317Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3326rna3326-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3326 ID=rna3326|Name=rna3326|organism=Nannochloropsis gaditana|type=mRNA|length=846bp
ACCTTGAGACACAAACATACTTGGTCCATGCCATTAGTGCTTTCCTCTCC
CTTTTTATCCTCACATCATGCGTATTGAACTAAGAGACGTGCATTTTTAC
ACGCGCACAGGTTGCTCCGGTGATCGTGTAGTTCGAGATGGCACCCAAGA
AAGCAGGACTGCTTGATATTGAGAAGCAGTTCACCTTCTATGCGGCTTAC
CACGACAACACCGTCAATAAATGGATCCACATCGTCTGCATCTGGCCCTT
GATATTCACCGGGCTTATGCTGCTTTGGACGAACGCCGGCATTGTTAGCC
AGATTTCTCTGCCTTCTTCGCTTACGAACCTTTCCGTTCAGGGCGTCCCT
CTCACTTTGAATTGGGCCCTGCTGGCCGCCTGCGTCTACATTGCCTTCTA
CTTATCCCTTGAATTCGAGAACGCGAAGAAAATGACAGGCTTGGGAATCT
TCGCGGCGGCTCTCGTGGCCATCCTCTACTTCGTCGCCGGGCGCTTGGTC
GCTCTCCCGCCCCTGCATGCTGCCTACGGGAAGCAGAGTGTGGAGATAAC
GTATCGACAAGCGGCATTGGCCACCCACGGTATGTGCTGGGTCGCTCAAT
TCATTGGCCACGGTCTCTTTGAAGGAAGAGCTCCCGCCCTCTTCACCAAT
CTTGTCCAGGCATTCCTCATGGCTCCCATATTCGTGTTGCTCGAGGTGGT
GTTCTTGCTAGGGGGGAAGAAAAAGCTTCACAAGTCTATCGCCGCCAGGG
TCCAGGAGGAGATCAGCGCCTACAAGATTCAGCGAGAGATCTCGAGCGGG
AAGGGGCGGGTGACGCGGTCAAAGAGCAAGAAGGCCTGAGGGTTGG
back to top

protein sequence of rna3326

>rna3326-protein ID=rna3326-protein|Name=rna3326|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MMPIPSSSLPAAEEISRSTTRRPFSLSGYPRPPPPPPPLSPPASSIFSSS
ASSASGFPILPNASPPSPSSLTPSSSPWRAGERKR
back to top

mRNA from alignment at CM002461.1:127668..128098-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3326 ID=rna3326|Name=rna3326|organism=Nannochloropsis gaditana|type=mRNA|length=431bp|location=Sequence derived from alignment at CM002461.1:127668..128098- (Nannochloropsis gaditana)
AGGCCCCTAGATGATGCCCATCCCCTCCTCCTCCCTCCCTGCGGCCGAAG
AGATTTCGCGCTCTACTACACGGCGCCCCTTTTCCCTCTCAGGGTATCCT
CGCCCTCCTCCTCCTCCTCCTCCCCTATCTCCTCCTGCCTCGTCCATCTT
CTCCTCCTCGGCGAGCTCAGCAAGTGGGTTCCCCATTCTCCCCAACGCTT
CTCCGCCCTCTCCCTCCTCCCTCACTCCCTCCTCCTCGCCCTGGAGGGCG
GGAGAGAGGAAGAGGTAGAGCTCTCCTTCGCGATCCTCGACGAGGGGTGG
GCGCAGAGACGGAGCCTGGAGGGCGGGAAGGAGGGCGAGATGGGCGTGGA
GGTGGAGGTGGAGAGGTTGCGAGTGCGATTGGATTGGAAGGGGGAAGCCC
GGGTCCGGTTCCGCGTTGAAGCCGGGAGGGA
back to top

Coding sequence (CDS) from alignment at CM002461.1:127668..128098-

>rna3326 ID=rna3326|Name=rna3326|organism=Nannochloropsis gaditana|type=CDS|length=258bp|location=Sequence derived from alignment at CM002461.1:127668..128098- (Nannochloropsis gaditana)
ATGATGCCCATCCCCTCCTCCTCCCTCCCTGCGGCCGAAGAGATTTCGCG
CTCTACTACACGGCGCCCCTTTTCCCTCTCAGGGTATCCTCGCCCTCCTC
CTCCTCCTCCTCCCCTATCTCCTCCTGCCTCGTCCATCTTCTCCTCCTCG
GCGAGCTCAGCAAGTGGGTTCCCCATTCTCCCCAACGCTTCTCCGCCCTC
TCCCTCCTCCCTCACTCCCTCCTCCTCGCCCTGGAGGGCGGGAGAGAGGA
AGAGGTAG
back to top
Synonyms
Publications