rna3324, rna3324 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3324
Unique Name	rna3324
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1238
Alignment location	CM002461.1:122463..124568 -

Link to JBrowse

Properties


Property Name	Value
Product	Acyltransferase 3
Orig transcript id	gnl\|cribi\|Naga_100771g2.3519.mrna
Orig protein id	gnl\|cribi\|Naga_100771g2.3519
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:122463..124568 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100771g2	gene3200	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27359.1	cds3315	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3324	rna3324-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:122463..124568-
coding sequence from alignment at CM002461.1:122463..124568-

mRNA sequence

>rna3324 ID=rna3324|Name=rna3324|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp
TCCCACGTACCCTCCCACCCTCCTTCCTCTCTTTCCTCTGCTTCGACCTC
CCTCTGGCCTGCCCTCCCCTTTCCCTTCCCTCCTCTTCCTCCCTCTGTCA
GCCATCCGCCAGTGGCACCTCCCCCCCCCTTCCTCCCCTGTCCCCTCGAC
CAGGACTCTTCACCCCCCCCCTCCTCCTTCGCCTCCAGCTCACCTGCCTT
CTTTCCTCCCCATCACACATCCGGGATCCTCCGCCTCCGTCTTCCCTTTC
ACTCACCTCCCTTCCCTCTCCCCTTCCTCATCATTCCTCCCAGGCATCCC
TTCCATTCCCTTCGCCATCTCCGGAACGGTCGTGACCCGTGCGTCCGCGA
TTCGCACCAACGAAGGTGCCTTGAAACTCACCTTGAAGAGCAGTGGCGTC
CAGGTCAGTTCAAAATTTCAAATTCAAAAATTCATATGTTGGGAGGGCGT
GGAACCGTTCGTGGTGGCTTTCCATCTTGCCCGGATAGTGTGTTTGCCCT
TCTCTTCCTTCCCCCCCTTTTTCAGTACATTGTACCCTTTCCTCGGCAAA
TTCCTCCTGCTTTCTTCTCCTTCTCGTGCCTGACACGGGTGGGGACGATA
TGTCACGCTCCTCTTCGTTCCCACGTCGCCCCTCCCCAACCCTCCCTCGC
TCCCTACCTCCCTCGCCCCTCCTTCAGTCCTCCTCGCTCTTCTCCCTCCT
GGGCGCGGGGGGGAACCTCCCCGAGCTCCCGCTCGCCGAAATTGGCGAGC
GCCTCGGGCTTTCCCCCCCCACCCTCCTCCTGAACACCTACTACGTGGAT
GCCAATATGCGGATCAGCAGGAACGAGGATGACCACGTCTTTGTGTGGGC
ACGGGGGCACTTGTAGCCGGAGGGATGGCGCGCGGGAGGGGCGGTGGAAA
TAGGGAGAGTGGTGGGGAGAGGGGGTGGGACGCCGGAATGGGAAGGGCAT
TGTTTTTAACTGCACAGGAATGCGTGGGAAGGAAAACGAGGGGGAAAAAG
TGCGTGACAGGAGAGGGGAAGGAGGACCCTCCCTGCGTCCCGGACGAAAC
GGAAGTTTAAAATTTTGAATGGGGGGCGGTAAGTTTGGAAGGGGGATCGA
TCCCGGTAGTCAGGCAGGGGGGGAGGAAATAAGAGTCGGAGGACATACTC
TGTCTGAGGAAGGACGAAGGGAGTCAAAGGGTCCTGTCTGTAAGCTGGGT
GTTCAAAACAACTTCGAGCAGAAGCCTCTGCGACGGCG

protein sequence of rna3324

>rna3324-protein ID=rna3324-protein|Name=rna3324|organism=Nannochloropsis gaditana|type=polypeptide|length=701bp
MHTGMFDPSNHITAPKVPRSSPLRPLPVDMQSHGGLRGVAAVWIVIFHCF
GDPRYHAGWVVALQGSSLMPLFFMLSGFSLAVTYGRTTWAVSSFTWPWGG
KNEQQGASSSSQSHSICVVTGMDRMEQGNELPETTTVATSVPACLDPPTP
LQPFFPTRDFYQNRIARVIPVYWLSILISIPLWLLNIADYPFSLQTFLPS
LATSIIPVTSLFSAWNEHYIAAINPVGWFITTLAFFWLFFPVWLPRMQRL
SDRGLLGVVVVGYWLQLFLIQSLYSVLPLFFHFRPFTTATMNPLSRFPLF
LMGMAAGLLSLRHASSEKIPGGPHRTLPTPQAGGATHSYNPLACSKGQHP
GRKGSEIIIKSPVRSQEKANVHMRPPPGPLTGDTLTADGLFPTGFNSIIK
AENGHVETSPEKGDSTVFPWPACVLCLPLPTPCAASRPPVKDHPPSPSRP
PRGSTLHSERAPPPPLPTDRGIPSTISSFPLAHVCDEPSPRPSPGPSLLP
SLPELLLLHWTPPSTPKGWALAASQHALALLLCTLLVAGIDTGYRIVTQG
RHTIGAQVWYQGVVVMAQLNVVLALTRDEGRSHAARFLRIPVCAWLGSIS
MNLYLLHYPLLGYLALALHPSHVPALLRCFHLGRGGKEGDMEAEVEAERV
VRCQALIKDVRVLPWWSVLIVVPVAIGLAEGVGRWVEAPARQAWRRGKGR
G

mRNA from alignment at CM002461.1:122463..124568-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3324 ID=rna3324|Name=rna3324|organism=Nannochloropsis gaditana|type=mRNA|length=2106bp|location=Sequence derived from alignment at CM002461.1:122463..124568- (Nannochloropsis gaditana)
ATGCATACTGGCATGTTTGATCCGTCCAATCACATCACAGCCCCAAAAGT
ACCGCGAAGCTCTCCGCTCAGACCCTTACCAGTGGACATGCAATCCCATG
GAGGACTCCGAGGGGTGGCTGCTGTGTGGATCGTCATATTTCATTGCTTT
GGGGACCCCAGATATCATGCAGGCTGGGTGGTAGCGTTACAAGGATCGAG
CCTGATGCCTTTATTCTTTATGCTGTCCGGTTTCTCGTTGGCTGTGACAT
ATGGGCGCACGACATGGGCTGTGTCGTCCTTCACTTGGCCTTGGGGAGGC
AAGAATGAGCAGCAAGGTGCCAGTTCCTCGTCACAAAGCCACTCAATATG
TGTCGTCACTGGTATGGACAGGATGGAACAAGGCAACGAACTGCCGGAAA
CGACGACAGTCGCTACGTCCGTGCCTGCCTGCTTAGACCCCCCAACACCT
CTGCAACCCTTCTTTCCCACGCGCGATTTCTACCAGAACCGCATTGCCCG
GGTCATACCCGTATACTGGCTGTCCATCCTCATCTCCATTCCGTTGTGGC
TTCTGAACATTGCCGATTATCCTTTCTCCCTCCAAACCTTCCTCCCCTCC
CTGGCTACCAGCATCATCCCCGTCACCTCGCTCTTCTCGGCGTGGAACGA
GCATTACATCGCAGCCATCAACCCCGTCGGCTGGTTTATCACAACGCTTG
CCTTCTTCTGGCTGTTTTTCCCTGTCTGGCTCCCGCGTATGCAACGCTTA
TCGGACAGGGGGTTGCTCGGCGTGGTGGTCGTGGGGTATTGGCTACAACT
CTTTTTAATCCAAAGCCTTTATTCCGTCCTGCCCCTTTTTTTCCATTTCC
GCCCCTTCACCACCGCCACTATGAACCCTCTTTCCCGCTTCCCCCTCTTT
CTCATGGGCATGGCCGCAGGCTTGCTCTCCTTGCGGCATGCGTCTTCTGA
GAAAATTCCCGGAGGCCCCCACCGGACGCTACCCACCCCCCAGGCAGGTG
GCGCAACTCATTCGTACAACCCCCTTGCATGCAGTAAAGGCCAACACCCT
GGCAGGAAAGGATCGGAGATCATCATCAAGTCCCCTGTCAGGAGTCAAGA
GAAAGCCAATGTCCACATGCGCCCGCCCCCTGGCCCCCTGACCGGGGACA
CCTTAACGGCGGACGGTCTTTTTCCGACGGGGTTTAATTCCATCATAAAG
GCCGAAAACGGGCATGTGGAAACGTCCCCGGAAAAGGGCGACAGCACGGT
CTTTCCTTGGCCGGCCTGCGTCCTTTGCCTTCCCCTGCCAACGCCATGCG
CGGCGTCCCGCCCGCCTGTCAAGGATCATCCTCCTAGCCCCTCTCGTCCT
CCCCGTGGATCCACGCTGCACAGTGAACGAGCTCCGCCACCTCCTCTTCC
CACCGACCGAGGTATCCCCAGCACCATCAGCTCCTTTCCTCTTGCCCACG
TTTGCGACGAGCCTTCTCCCCGCCCCTCCCCCGGCCCCTCCCTTCTTCCC
TCCCTCCCCGAGCTCCTCCTCCTCCACTGGACACCCCCCTCCACGCCCAA
GGGTTGGGCGCTGGCGGCAAGCCAACACGCACTTGCCCTCCTACTTTGCA
CCCTCCTGGTCGCCGGCATCGATACGGGCTACCGGATTGTCACCCAAGGA
AGGCACACGATCGGTGCGCAAGTGTGGTATCAAGGGGTGGTAGTCATGGC
TCAATTGAACGTGGTGCTGGCCTTGACCAGGGATGAGGGCCGTTCCCATG
CCGCCCGCTTTCTCCGTATCCCCGTCTGCGCCTGGTTGGGTAGCATCTCC
ATGAATCTCTATTTATTGCATTATCCCCTGTTGGGCTACTTGGCCCTGGC
GCTGCATCCCTCCCACGTCCCGGCCTTATTAAGGTGTTTTCACCTGGGAA
GAGGCGGGAAGGAGGGCGACATGGAGGCGGAGGTGGAAGCAGAAAGAGTG
GTGCGTTGCCAGGCCTTGATCAAGGACGTGCGTGTATTGCCCTGGTGGTC
TGTATTGATCGTGGTGCCGGTGGCGATCGGATTGGCTGAAGGGGTGGGAC
GGTGGGTCGAGGCGCCTGCTCGACAGGCGTGGCGGAGGGGGAAGGGGAGG
GGGTAA

Coding sequence (CDS) from alignment at CM002461.1:122463..124568-

>rna3324 ID=rna3324|Name=rna3324|organism=Nannochloropsis gaditana|type=CDS|length=2106bp|location=Sequence derived from alignment at CM002461.1:122463..124568- (Nannochloropsis gaditana)
ATGCATACTGGCATGTTTGATCCGTCCAATCACATCACAGCCCCAAAAGT
ACCGCGAAGCTCTCCGCTCAGACCCTTACCAGTGGACATGCAATCCCATG
GAGGACTCCGAGGGGTGGCTGCTGTGTGGATCGTCATATTTCATTGCTTT
GGGGACCCCAGATATCATGCAGGCTGGGTGGTAGCGTTACAAGGATCGAG
CCTGATGCCTTTATTCTTTATGCTGTCCGGTTTCTCGTTGGCTGTGACAT
ATGGGCGCACGACATGGGCTGTGTCGTCCTTCACTTGGCCTTGGGGAGGC
AAGAATGAGCAGCAAGGTGCCAGTTCCTCGTCACAAAGCCACTCAATATG
TGTCGTCACTGGTATGGACAGGATGGAACAAGGCAACGAACTGCCGGAAA
CGACGACAGTCGCTACGTCCGTGCCTGCCTGCTTAGACCCCCCAACACCT
CTGCAACCCTTCTTTCCCACGCGCGATTTCTACCAGAACCGCATTGCCCG
GGTCATACCCGTATACTGGCTGTCCATCCTCATCTCCATTCCGTTGTGGC
TTCTGAACATTGCCGATTATCCTTTCTCCCTCCAAACCTTCCTCCCCTCC
CTGGCTACCAGCATCATCCCCGTCACCTCGCTCTTCTCGGCGTGGAACGA
GCATTACATCGCAGCCATCAACCCCGTCGGCTGGTTTATCACAACGCTTG
CCTTCTTCTGGCTGTTTTTCCCTGTCTGGCTCCCGCGTATGCAACGCTTA
TCGGACAGGGGGTTGCTCGGCGTGGTGGTCGTGGGGTATTGGCTACAACT
CTTTTTAATCCAAAGCCTTTATTCCGTCCTGCCCCTTTTTTTCCATTTCC
GCCCCTTCACCACCGCCACTATGAACCCTCTTTCCCGCTTCCCCCTCTTT
CTCATGGGCATGGCCGCAGGCTTGCTCTCCTTGCGGCATGCGTCTTCTGA
GAAAATTCCCGGAGGCCCCCACCGGACGCTACCCACCCCCCAGGCAGGTG
GCGCAACTCATTCGTACAACCCCCTTGCATGCAGTAAAGGCCAACACCCT
GGCAGGAAAGGATCGGAGATCATCATCAAGTCCCCTGTCAGGAGTCAAGA
GAAAGCCAATGTCCACATGCGCCCGCCCCCTGGCCCCCTGACCGGGGACA
CCTTAACGGCGGACGGTCTTTTTCCGACGGGGTTTAATTCCATCATAAAG
GCCGAAAACGGGCATGTGGAAACGTCCCCGGAAAAGGGCGACAGCACGGT
CTTTCCTTGGCCGGCCTGCGTCCTTTGCCTTCCCCTGCCAACGCCATGCG
CGGCGTCCCGCCCGCCTGTCAAGGATCATCCTCCTAGCCCCTCTCGTCCT
CCCCGTGGATCCACGCTGCACAGTGAACGAGCTCCGCCACCTCCTCTTCC
CACCGACCGAGGTATCCCCAGCACCATCAGCTCCTTTCCTCTTGCCCACG
TTTGCGACGAGCCTTCTCCCCGCCCCTCCCCCGGCCCCTCCCTTCTTCCC
TCCCTCCCCGAGCTCCTCCTCCTCCACTGGACACCCCCCTCCACGCCCAA
GGGTTGGGCGCTGGCGGCAAGCCAACACGCACTTGCCCTCCTACTTTGCA
CCCTCCTGGTCGCCGGCATCGATACGGGCTACCGGATTGTCACCCAAGGA
AGGCACACGATCGGTGCGCAAGTGTGGTATCAAGGGGTGGTAGTCATGGC
TCAATTGAACGTGGTGCTGGCCTTGACCAGGGATGAGGGCCGTTCCCATG
CCGCCCGCTTTCTCCGTATCCCCGTCTGCGCCTGGTTGGGTAGCATCTCC
ATGAATCTCTATTTATTGCATTATCCCCTGTTGGGCTACTTGGCCCTGGC
GCTGCATCCCTCCCACGTCCCGGCCTTATTAAGGTGTTTTCACCTGGGAA
GAGGCGGGAAGGAGGGCGACATGGAGGCGGAGGTGGAAGCAGAAAGAGTG
GTGCGTTGCCAGGCCTTGATCAAGGACGTGCGTGTATTGCCCTGGTGGTC
TGTATTGATCGTGGTGCCGGTGGCGATCGGATTGGCTGAAGGGGTGGGAC
GGTGGGTCGAGGCGCCTGCTCGACAGGCGTGGCGGAGGGGGAAGGGGAGG
GGGTAA

Synonyms

Publications