rna3323, rna3323 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3323
Unique Name	rna3323
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	642
Alignment location	CM002461.1:120970..122207 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100771g4.3517.mrna
Orig protein id	gnl\|cribi\|Naga_100771g4.3517
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:120970..122207 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100771g4	gene3199	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3323	rna3323-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27357.1	cds3314	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:120970..122207+
coding sequence from alignment at CM002461.1:120970..122207+

mRNA sequence

>rna3323 ID=rna3323|Name=rna3323|organism=Nannochloropsis gaditana|type=mRNA|length=642bp
CCTTTCCTTTGTTCCACTCCGCGAGCGCCCACCATTTCAGTGCCTAACCA
CGGCTTCTATACCACACACACCGAATTTTAGGTCTTAGCATGTCACGGCT
ATGTGCAAAGCCGCTTTTCCTCCTTTTGCTTCTCCCATGCATTGCTTCCG
CCTTCCTCCTTCCATTTCCTCGTGCCTCCATTCCTTCCCGTTCACCGTCC
GTCCTGCTCTCCTCAGTGGAAGGAGCTGATTATCCCTCCGACACCGCCGA
CCCTGAACCCTCTCCGGAAGCGCGTGAAGGGAACGCCACGGTCTTCCCCT
CCTTTACCGACGAGGGCAAGGTCCAGCTGCGGGAAAAATTTAAGTGCCAG
ATCTACAAGGCCGCTGCCCGGCTGAACCGCGGTCAGCTGGCGAATTTGGA
TCAACAGAACGAAATGAGCAATTTGATCGCTCAGTTGGAGGCCATGGGGT
CCGGGCGTCCGGCCGAGACCGAGGCGGTGGAAGGGGTGTGGGAGCTGGTG
TACTCGGACGTCGCCCCGTTCCGAGCCTCTCCTTTCTTCATGACGGTGGG
GAAGGTCATGGAAGGCACCACGCTGAGCGCGGAGGAATTCTTCCGGCTCC
ACCGACTCGCGACCCGGGGGAGCGAGATTGGGAAGGTAGGGA

protein sequence of rna3323

>rna3323-protein ID=rna3323-protein|Name=rna3323|organism=Nannochloropsis gaditana|type=polypeptide|length=260bp
SHVPSHPPSSLSSASTSLWPALPFPFPPLPPSVSHPPVAPPPPFLPCPLD
QDSSPPPSSFASSSPAFFPPHHTSGILRLRLPFHSPPFPLPFLIIPPRHP
FHSLRHLRNGRDPCVRDSHQRRCLETHLEEQWRPGQFKISNSKIHMLGGR
GTVRGGFPSCPDSVFALLFLPPLFQYIVPFPRQIPPAFFSFSCLTRVGTI
CHAPLRSHVAPPQPSLAPYLPRPSFSPPRSSPSWARGGTSPSSRSPKLAS
ASGFPPPPSS

mRNA from alignment at CM002461.1:120970..122207+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3323 ID=rna3323|Name=rna3323|organism=Nannochloropsis gaditana|type=mRNA|length=1238bp|location=Sequence derived from alignment at CM002461.1:120970..122207+ (Nannochloropsis gaditana)
TCCCACgtaccctcccaccctccttcctctctttcctctgcttcgacctc
cctctggcctgccctcccctttcccttccctcctcttcctccctctgtca
gCCATCCGCCAGtggcacctcccccccccttcctcccctgtcccctcgAC
CAGGACTcttcaccccccccctcctccttcgcctccagctcacctgcctt
ctttcctccccatcacACATCCGGgatcctccgcctccgtcttccctttc
actcacctcccttccctctccccttcctcatcattcctcccaggcatccc
ttccattcccttcgCCATCTCCGGAACGGTCGTGACCCGTGCGTCCGCGA
TTCGCACCAACGAAGGTGCCTTGAAACTCACCTTGAAGAGCAGTGGCGTC
CAGGTCagttcaaaatttcaaattcaaaaattCATATgttgggagggcgt
ggaacCGTTCGTGGTGGCTTTCCATCTTGCCCGGATAGTGTGtttgccct
tctcttccttccccccctttttcagTACATTGTACCCTTTCCTCGGCAAA
TTCCtcctgctttcttctccttctcgtgcCTGACACGGGTGGGGACGATA
TGTCACGCTCCTCTTCGTTCCCacgtcgcccctccccaaccctccctcgc
tccctacctccctcgcccctccttcagtcctcctcgctcttctccctcct
gggcgcgggggggaacCTCCCCGAGCTCCCGCTCGCCGAAATTGGCGAGC
GCCTcgggctttccccccccaccctcctcctgaacACCTACTACGTGGAT
GCCAATATGCGGATCAGCAGGAACGAGGATGACCACGTCTTTGTGTGGGC
ACGGGGGCACTTGTAGCCGGAGGGATGgcgcgcgggaggggcggtggaaa
TAGGGAGAGtggtggggagagggggtgggacGCCGGAATGGGAAGGGCAT
TGTTTTTAACTGCACAGGAAtgcgtgggaaggaaaacgagggggaaaaag
tgcgtgacaggagaggggaaggaggacccTCCCTGCGTCCCGGACGAAAC
GGAAgtttaaaattttgaatgGGGGGCGGTAAGTTTGGAAGGGGGATCGA
TCCCGGTAGtcaggcagggggggaggaaataagAGTCGGAGGACATACTC
TGTCTGAggaaggacgaagggagTCAAAGGGTCCTGTCTGTAAGCTGGGT
GTTCAAAACAACTTCGAGCAGAAGCCTCTGCGACGGCG

Coding sequence (CDS) from alignment at CM002461.1:120970..122207+

>rna3323 ID=rna3323|Name=rna3323|organism=Nannochloropsis gaditana|type=CDS|length=783bp|location=Sequence derived from alignment at CM002461.1:120970..122207+ (Nannochloropsis gaditana)
TCCCACgtaccctcccaccctccttcctctctttcctctgcttcgacctc
cctctggcctgccctcccctttcccttccctcctcttcctccctctgtca
gCCATCCGCCAGtggcacctcccccccccttcctcccctgtcccctcgAC
CAGGACTcttcaccccccccctcctccttcgcctccagctcacctgcctt
ctttcctccccatcacACATCCGGgatcctccgcctccgtcttccctttc
actcacctcccttccctctccccttcctcatcattcctcccaggcatccc
ttccattcccttcgCCATCTCCGGAACGGTCGTGACCCGTGCGTCCGCGA
TTCGCACCAACGAAGGTGCCTTGAAACTCACCTTGAAGAGCAGTGGCGTC
CAGGTCagttcaaaatttcaaattcaaaaattCATATgttgggagggcgt
ggaacCGTTCGTGGTGGCTTTCCATCTTGCCCGGATAGTGTGtttgccct
tctcttccttccccccctttttcagTACATTGTACCCTTTCCTCGGCAAA
TTCCtcctgctttcttctccttctcgtgcCTGACACGGGTGGGGACGATA
TGTCACGCTCCTCTTCGTTCCCacgtcgcccctccccaaccctccctcgc
tccctacctccctcgcccctccttcagtcctcctcgctcttctccctcct
gggcgcgggggggaacCTCCCCGAGCTCCCGCTCGCCGAAATTGGCGAGC
GCCTcgggctttccccccccaccctcctcctga

Synonyms

Publications