rna3318, rna3318 (mRNA) Nannochloropsis gaditana

Overview
Namerna3318
Unique Namerna3318
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length546
Alignment locationCM002461.1:112125..112328 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100584g3.8930.mrna
Orig protein idgnl|cribi|Naga_100584g3.8930
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:112125..112328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100584g3gene3194Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3318rna3318-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27363.1cds3309Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3318 ID=rna3318|Name=rna3318|organism=Nannochloropsis gaditana|type=mRNA|length=546bp
ATGAGTGTAAATAGACGGTCCTCATCTTCTGCTGCGCGCGTGCCTGTTCC
CGCCTCTGCTGTTTCAAATCGTGGCGTTCCGACCCCAAGAACAAGGGGAG
CTCATTCCAATCCTGCGTCACTTCCCGGGGGTTATGCAAATGTACCTGGC
AACGTAGCGATTGAAAGTGTATCACAGACTTCAACTCTTACCACCCCTGT
CTTACGTGGAGCTAGCGCAGAGTCTTTGACTGCTAGAAGAATAAGAACAA
CGTATCAACGACTGAACCCGTCCGCTTCGCCCGCACAACGGATACGGCGA
GATGTTGCGGAAAGAAGAGATAGAATGGAGGAGAGCCCCGATGGACAGGA
AACGAATCAGCAGTGCCCGTGGTCTGATGAAAATAGCTCACAGGACAAAA
CGGATGCTTGGGTGGCTCTGGCGAAGGACGAGGAGAGCGATCAGGCTATG
CATGCGTCCTGGGATCATAGTACCGTGACCGATGTCTGCGCAACGCTCAA
GAAACTGGCGGCATCATTGGACGAGGATAAGTGGATGTATGAGTGA
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protein sequence of rna3318

>rna3318-protein ID=rna3318-protein|Name=rna3318|organism=Nannochloropsis gaditana|type=polypeptide|length=67bp
MEEDGGQFTGSNIRGDSGRTCGCVIYRRMEPPRVQRDEGRQHQRQLRKGG
GVIQVHGLEVIHVCRVI
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mRNA from alignment at CM002461.1:112125..112328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3318 ID=rna3318|Name=rna3318|organism=Nannochloropsis gaditana|type=mRNA|length=204bp|location=Sequence derived from alignment at CM002461.1:112125..112328+ (Nannochloropsis gaditana)
atggaggaggatggagggcagTTCACCGGCTCCAACATAAGAGGTGATAG
CGGAAGGACATGTGGATGTGTGATATATAGGAGGATGGAACCGCCAAGAG
TCCAAAGAGACGAGGGAAGACAGCATCAGAGACAACTAAGAAAAGGAGGT
GGTGTCATTCAAGTGCACGGACTCGAGGTTATTCACGTGTGCCGTGTAat
ttga
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Coding sequence (CDS) from alignment at CM002461.1:112125..112328+

>rna3318 ID=rna3318|Name=rna3318|organism=Nannochloropsis gaditana|type=CDS|length=204bp|location=Sequence derived from alignment at CM002461.1:112125..112328+ (Nannochloropsis gaditana)
atggaggaggatggagggcagTTCACCGGCTCCAACATAAGAGGTGATAG
CGGAAGGACATGTGGATGTGTGATATATAGGAGGATGGAACCGCCAAGAG
TCCAAAGAGACGAGGGAAGACAGCATCAGAGACAACTAAGAAAAGGAGGT
GGTGTCATTCAAGTGCACGGACTCGAGGTTATTCACGTGTGCCGTGTAat
ttga
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Synonyms
Publications