rna3317, rna3317 (mRNA) Nannochloropsis gaditana

Overview
Namerna3317
Unique Namerna3317
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1775
Alignment locationCM002461.1:111555..112100 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100584g2.8931.mrna
Orig protein idgnl|cribi|Naga_100584g2.8931
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:111555..112100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100584g2gene3193Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3317rna3317-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27364.1cds3308Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3317 ID=rna3317|Name=rna3317|organism=Nannochloropsis gaditana|type=mRNA|length=1775bp
TCGCTGCACTCGCTCTACATCGTAGCAGCCATGGTCGTTGTAAGGGGAGA
TGCACGATCGGAAAGCCGCTTGCTCTGTCTCGTGTGGATGTGCTGCCTAG
CAATGATCGGCATTGTCAGCGGAGAGCTGATGCTCTCTCACTCATTTTCG
GCCCCATTCAACGACGTGCAAGTGGATGGAAAGCGTTTTGTTAGCAGAGA
CTGGTCACCCGCGGGGGAAACACAGGTCAACCAGAACTTTGTTCGCTTGA
CCCCGGACCGCCAGTCCAAGATAGGAGCGCTTTGGTCGCACAAAGCGCTG
GGGGTAGACGCCGTGACCATGACACTGAAGTTCAGGATCCATGGGCAGGG
AAAGAAGTTTTTCGGCGACGGGATCGGCTTTTGGGTCATGGAGAGCCCTT
ATTGGCAAGAAGGGGACCTGCATGGGGTTTCCCATGCCTTCGTAGGCGTG
GGAGTGGCCTTCGACACCTTCCGCAACACGGAGCACGGAACGCGGCATCG
GGACGTGGCGGTTTTTGTCAACAATGGGGACCGCAGTCGGGAGGAAGTCC
TGACCGGTTTCGACGGATGTGACGCCTCCATTCGCTACCACGGAGAGCGC
GCAGATTTCTCGGTCACCAACTCCAGCCGAGCGAAACTGACGATCGAGGG
CAACACTCTTTCCGTGCAGATCGATCCCCGCGGACAGGGGAACTGGTTCC
AGTGCACAACTGTTGACCTTTCCACATACAACTTGCCCGAGCATTGGTTA
CGGAAGGCCCATGTGGGCTTGACTGGCACCACGGGTCAGCTCGCCGACAA
CCATGACGTGATCTCCCTTCACACCTTCAACGATTTAGACGTGCACCCGG
AGGCGGACGACTTGATCGTGACTCCCAAATTCGGCCGTGGCGTTGATCTC
TCTGTGGAAGAGCGCTTGGACCGTGTAGAGGTACACACTTTTTTCCCTCT
CCTTATTTTCTTCCCGCCTTCTCATCTTTTGCCCCTTTCCCATCCATCTC
CCTCTCATCCTCTCTTCCTTGCTCGCGGTGCTCTCTTCCACCTTCCCGTC
CAGATACATCCCCTCCTGATCCGTTCCTTTTCTTCTTTCTCTTTCCTTCC
CTCTCTCCCTTCCCCACTGTTTTCAGGACATGATGTCGCAGATCCTCCAC
CTCCTGGACGAGATGCAGGCGCACAACGAGCATCAGCTGGTCGCCATCCA
GGACCATATAGCCAATACCATTAGGAAGCTTCAATCCCAGGAAGACGTCT
CAGAGGCTCGGATTGTCGCCCTGGAGCAAGAACTCTTCAAGAGCGTGGAA
GGCACAGTAGAGGAGCGTCTGAAATCGGTCGAGGGGTCCATTTCAAATGC
AATGGCTCATCGAGTCGCCGCTATCGAAACGAATTTGCATTCGAAAGTGA
ACACGGTGATGGCCGCAGCGGGGAGTGGGGGAGGAGGACGATGGCCGGTG
ATCGTCATGTGCCTATTGCTTGCCCTTTGCATGTTCCAGATGTATCGCTG
GGTCGAGCGGCTGAAGAAAAGTCACATTTTGTAGTAAAAGGCAATAATGC
AAGGCAAGTCGTCTGCGAGGAGATGAAAGGTTTCCTCTCAGTTGCGGGTC
GCTTTTTTCCGTGCGAAAGGCTGGAAGCAAGTAAAACATAGAACTTTGAA
AGTTATCGTTAGTGGGCAAGAAAAGGAAGGCCGGATAATTGGAAAATCAT
CGAAAGGAAGGCTGGTGTTGATAGAAGAGACATGAGTCGATGAGAAAAGT
AATAAACAAAATAGCTCACTTTACA
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protein sequence of rna3317

>rna3317-protein ID=rna3317-protein|Name=rna3317|organism=Nannochloropsis gaditana|type=polypeptide|length=181bp
MSVNRRSSSSAARVPVPASAVSNRGVPTPRTRGAHSNPASLPGGYANVPG
NVAIESVSQTSTLTTPVLRGASAESLTARRIRTTYQRLNPSASPAQRIRR
DVAERRDRMEESPDGQETNQQCPWSDENSSQDKTDAWVALAKDEESDQAM
HASWDHSTVTDVCATLKKLAASLDEDKWMYE
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mRNA from alignment at CM002461.1:111555..112100+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3317 ID=rna3317|Name=rna3317|organism=Nannochloropsis gaditana|type=mRNA|length=546bp|location=Sequence derived from alignment at CM002461.1:111555..112100+ (Nannochloropsis gaditana)
ATGAGTGTAAATAGACGGTCCTCATCTTCTGCTGCGCGCGTGCCTGTTCC
CGCCTCTGCTGTTTCAAATCGTGGCGTTCCGACCCCAAGAACAAGGGGAG
CTCATTCCAATCCTGCGTCACTTCCCGGGGGTTATGCAAATGTACCTGGC
AACGTAGCGATTGAAAGTGTATCACAGACTTCAACTCTTACCACCCCTGT
CTTACGTGGAGCTAGCGCAGAGTCTTTGACTGCTAGAAGAATAAGAACAA
CGTATCAACGACTGAACCCGTCCGCTTCGCCCGCACAACGGATACGGCGA
GATGTTGCGGAAAGAAGAGATAGAATGGAGGAGAGCCCCGATGGACAGGA
AACGAATCAGCAGTGCCCGTGGTCTGATGAAAATAGCTCACAGGACAAAA
CGGATGCTTGGGTGGCTCTGgcgaaggacgaggagagcgatCAGGCTATG
CATGCGTCCTGGGATCATAGTACCGTGACCGATGTCTGCGCAACGCTCAA
GAAACTGGCGGCATCATTGGACGAGGATAAGTGGATGTATGAGTGA
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Coding sequence (CDS) from alignment at CM002461.1:111555..112100+

>rna3317 ID=rna3317|Name=rna3317|organism=Nannochloropsis gaditana|type=CDS|length=546bp|location=Sequence derived from alignment at CM002461.1:111555..112100+ (Nannochloropsis gaditana)
ATGAGTGTAAATAGACGGTCCTCATCTTCTGCTGCGCGCGTGCCTGTTCC
CGCCTCTGCTGTTTCAAATCGTGGCGTTCCGACCCCAAGAACAAGGGGAG
CTCATTCCAATCCTGCGTCACTTCCCGGGGGTTATGCAAATGTACCTGGC
AACGTAGCGATTGAAAGTGTATCACAGACTTCAACTCTTACCACCCCTGT
CTTACGTGGAGCTAGCGCAGAGTCTTTGACTGCTAGAAGAATAAGAACAA
CGTATCAACGACTGAACCCGTCCGCTTCGCCCGCACAACGGATACGGCGA
GATGTTGCGGAAAGAAGAGATAGAATGGAGGAGAGCCCCGATGGACAGGA
AACGAATCAGCAGTGCCCGTGGTCTGATGAAAATAGCTCACAGGACAAAA
CGGATGCTTGGGTGGCTCTGgcgaaggacgaggagagcgatCAGGCTATG
CATGCGTCCTGGGATCATAGTACCGTGACCGATGTCTGCGCAACGCTCAA
GAAACTGGCGGCATCATTGGACGAGGATAAGTGGATGTATGAGTGA
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Synonyms
Publications