rna331, rna331 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna331
Unique Name	rna331
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1396
Alignment location	CM002455.1:818890..820115 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100003g165.1764.mrna
Orig protein id	gnl\|cribi\|Naga_100003g165.1764
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:818890..820115 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g165	gene320	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30247.1	cds331	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna331	rna331-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:818890..820115-
coding sequence from alignment at CM002455.1:818890..820115-

mRNA sequence

>rna331 ID=rna331|Name=rna331|organism=Nannochloropsis gaditana|type=mRNA|length=1396bp
TAGAGCGGCTCTCAACCCGGCCACTGCACCTGTGCTTGGATGTGCATTAC
ACATAAGTGTGCTCGCTCTACCTCACAAAGACTTTGAACGCTTATGCACC
GCCGCTATCGTCACGAACATGTGGCATTGGGAGTGCCGCCAACCCTCGCA
CGCCTGTCTTCCTCGCTAGAAGGCTCAGCGAGCGCAGGTACATGGCACTC
AGGTACTCCACACGCACACAGGACTCGTCGTCCCCTTTCCGGAGCGCGTC
ACCATCTCCGCAAGTAATTATGAAAGGTATCAAGTCAATCGTCATAACCA
TTGCCATGGAAGGCGAGGCCATGCCGCTCATCACGAAATTAGGTTTGACC
CAGCAGTCCAATTATTTTGGACACGCAGCACCCTTTCACTGCTTCACTGG
AACATACAACAACTACAACCTCGCAATTGTGACCAATGGAAAGGATCGAA
AGTTCGGATGTGACAACGTAGGCACAGTCCCTGCGGCATTGGCTACCTAT
TTGGCCGTGGAGCAACTCAAACCAGATCTGCTGATAAATGCAGGGACTGC
GGGCGGCTTCGAGTCGAAAGGCATGGCCATAGGCGATGTACTCATAAGCA
GTACAATCCATAATCACGACCGCCGCATGCTTTTGCCCATATTTGTCGAC
TATGGTGTTCACAATCATAAGGCTGTGGAAACTCCTCGCCTGCGCGAGGC
CTTAAAATTCAAACTGGGAGTGGTGAGCACAGGCAACTCTTTGGACCATG
TGGAGGCGGACGACGCCCTTATGGCGGCCAACGATGCCTCCGTCAAGGAC
ATGGAGGCCGCGGCGGTGGCCTGGGCGGCAGAGCTTTACTCTGTGCCCTA
CTTTGCCCTCAAAGTAGTGACGGATATCGTTGACGGCGCACATGCCACTG
AAGAAGAATTTGTCGCGAACTTCGCGATGGCACAAAGGCGACTACAAGAA
GCCGTACCCGCGACACTCGACCATGTGTTGGGCAGGTCTTTAGAGGAGCT
ATAAATAAGAAAACCTTGACTGTCTTGATGCCTCAAGAGATTTTTTTAAA
TCAGTTTTTGCTTAACAGAAAGAGATGGGGTCACATTTCGGAATGTTGCA
AAGCTTGAATCGTTTGTCAAAGAAGTGTTTTGTTTCAGTTATGGAGGATT
TTGCCCCGTACCCAATTTTTTCACAAATATGTTCAACAAAACCGTTTGAA
TGCAAGAATCAGACTGACACTGTAAGATCCAGCAGCGATTTGCACGTGGA
AATCACTTATAATTTTCTTGGCGCTAAATTAGGCCCCTTTACGTGTATCG
AACAACACATGCACTGCTGCTGTCGAGTATTTTATGTCACCGCAACGGCC
GTGCAAAAGAATCTGGCAGGCTCTCAGTAGGAGGGCGGCTATTGCT

protein sequence of rna331

>rna331-protein ID=rna331-protein|Name=rna331|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MKNVAEDKENMDPYPHKSRGLGANDSFNSLHTGYQSRSGGKPLSPGASKR
KRGQVEQRETRAPLRDITTMPGLAPTLAQPAFDIASDTAALPQDGVHRAS
SRPTATSASVTAHKKKSSKGNRAMKDTGNKRHYNGPKHDKDRKAVLKSNS
RPPTESLPDSFARPLR

mRNA from alignment at CM002455.1:818890..820115-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna331 ID=rna331|Name=rna331|organism=Nannochloropsis gaditana|type=mRNA|length=1226bp|location=Sequence derived from alignment at CM002455.1:818890..820115- (Nannochloropsis gaditana)
CGTGTGTGTACATGTCTCTGCAAGTTTCTTTTTAGATGATGCCGTCATTT
GCGCCTTCGCGTCGCCCGCTCCTAGACGCGGGAGATGAGCGTTAAATTTA
CAAGTGCTTCATCCTCGCACTATGCGTCGTTCCGCCAGAAGAAACTGGGC
TTTAAAGTGCATGTAGGTGCAAGCCAGGTTGAATTTGAAGGTGGTTCCCG
CCATGCATCCAATCGGAAATCGTAATTTGGTCTGGACCTGATACCTGCTT
TCCGCATCCCGCCATATTACAAGATGATAACTTCACGAGAATTCACCAGA
ATCACTTAATGGCTGTTACATTTGTACAAGTACTCACTTATAATTTCTTC
GCCCTCGTATATCGCAGACTTTTCCGCTTCACCACCCTAAGCCCTCTTGC
GCCATCAGCTTTACCATGAAAAATGTCGCCGAGGATAAGGAAAACATGGA
CCCGTACCCGCACAAAAGTCGAGGTCTGGGCGCCAACGATAGTTTCAACT
CCTTGCACACTGGGTACCAAAGTCGTTCTGGAGGGAAACCACTCTCCCCT
GGGGCAAGCAAGCGTAAGCGGGGCCAAGTGGAGCAGAGAGAGACTCGCGC
CCCCCTACGAGATATCACAACAATGCCGGGCCTAGCGCCCACCTTGGCAC
AGCCAGCCTTTGATATCGCCTCTGATACCGCAGCACTACCTCAGGATGGT
GTGCACCGAGCCAGCAGCCGTCCGACCGCCACCAGTGCATCGGTGACAGC
ACACAAGAAAAAGTCATCAAAAGGGAACAGAGCCATGAAGGATACAGGAA
ACAAGAGACATTATAACGGCCCAAAACACGACAAAGACAGGAAAGCGGTG
CTCAAAAGCAATAGCCGCCCTCCTACTGAGAGCCTGCCAGATTCTTTTGC
ACGGCCGTTGCGGTGACATAAAATACTCGACAGCAGCAGTGCATGTGTTG
TTCGATACACGTAAAGGGGCCTAATTTAGCGCCAAGAAAATTATAAGTGA
TTTCCACGTGCAAATCGCTGCTGGATCTTACAGTGTCAGTCTGATTCTTG
CATTCAAACGGTTTTGTTGAACATATTTGTGAAAAAATTGGGTACGGGGC
AAAATCCTCCATAACTGAAACAAAACACTTCTTTGACAAACGATTCAAGC
TTTGCAACATTCCGAAATGTGACCCCATCTCTTTCTGTTAAGCAAAAACT
GATTTAAAAAAATCTCTTGAGGCATC

Coding sequence (CDS) from alignment at CM002455.1:818890..820115-

>rna331 ID=rna331|Name=rna331|organism=Nannochloropsis gaditana|type=CDS|length=501bp|location=Sequence derived from alignment at CM002455.1:818890..820115- (Nannochloropsis gaditana)
ATGAAAAATGTCGCCGAGGATAAGGAAAACATGGACCCGTACCCGCACAA
AAGTCGAGGTCTGGGCGCCAACGATAGTTTCAACTCCTTGCACACTGGGT
ACCAAAGTCGTTCTGGAGGGAAACCACTCTCCCCTGGGGCAAGCAAGCGT
AAGCGGGGCCAAGTGGAGCAGAGAGAGACTCGCGCCCCCCTACGAGATAT
CACAACAATGCCGGGCCTAGCGCCCACCTTGGCACAGCCAGCCTTTGATA
TCGCCTCTGATACCGCAGCACTACCTCAGGATGGTGTGCACCGAGCCAGC
AGCCGTCCGACCGCCACCAGTGCATCGGTGACAGCACACAAGAAAAAGTC
ATCAAAAGGGAACAGAGCCATGAAGGATACAGGAAACAAGAGACATTATA
ACGGCCCAAAACACGACAAAGACAGGAAAGCGGTGCTCAAAAGCAATAGC
CGCCCTCCTACTGAGAGCCTGCCAGATTCTTTTGCACGGCCGTTGCGGTG
A

Synonyms

Publications