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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100438g1.1495.mrna |
| Orig protein id | gnl|cribi|Naga_100438g1.1495 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:57569..58705 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3306 ID=rna3306|Name=rna3306|organism=Nannochloropsis gaditana|type=mRNA|length=908bp
ATGAAGGAGCGCATGGCTTGCGTTGATCTCGGGGACTGGTCGATTCGAAG
TAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGCTGCCCTCTCGCACCG
CACGGGAGTCATTTCAGACTTCTCAGACCTACCAACACCTCTGCTTCCTC
CGCCTTCCCCCCGGCCGCCCAGAGAAGGGGGAGGGAGAAGGGAGGAGAGT
CTTCGCGTTGAGGGAGGAGGAGGGGCGGGGCAGGGGAGCATGCCAATCAT
CGAGCTGCGACAACGCTCCCGGGGCTACGTGGAACTCGGCGGGAGCGAAG
AGGCGGTCTCTGCGGGCGAGGACGGGGAAGGCTTCTACCACAGTGGCTAC
GCGGGCGAGGCGGCGGGAAAGAGCCTTCGGCTGGGTACAGGTAGTAACCG
AGGTCGCTGTTTTCCCTCCATAAGCCCTGTCTTTCGCGTGGTATTGATGG
AAGAAGCCCTGATTGTCTTCCCTGCTCATTGCATGAACCCTCCAAGCTTG
TTTGCACGGGAAGTGGCTCGCCCATCCGACCTCCCTTCTGGTGCCCGTGT
CCTGCGCCCTCTACCGCCCTCAGTGCCCTCCATCGGGTTCGCGCCCTACC
CTCCTTGACTCAACCCTTGGCTCTTCCACCTCCTCATCCACGTCCTTGAC
CTCTCTCCAGCCCCTTTAGGCGGGGGCGGCCCTTACACCAGCCACTACCA
GGACGGCAGCGATGATGATTTCTCCACCAGTGGACCGCAAGGCCCCGTCG
GTACCTGGGCGCGTTTTCGAAAGACCAGCCGAGAACGGTGCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGGGGCCTAGATACCTGCCGT
TCCCTCCGCCATCCTCCCTTGTCCTCAGTTTGGTGTCGCCTGATCGCCGT
TACAATGC back to topprotein sequence of rna3306 >rna3306-protein ID=rna3306-protein|Name=rna3306|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MKERMACVDLGDWSIRSKQPGYGKRATLLPSRTARESFQTSQTYQHLCFL
RLPPGRPEKGEGEGRRVFAGYVELGGSEEAVSAGEDGEGFYHSGYAGEAA
GKSLRLGTAPLGGGGPYTSHYQDGSDDDFSTSGPQGPVGTWARFRKTSRE
RCLPPSLPPSLPPSLGA back to topmRNA from alignment at CM002461.1:57569..58705+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3306 ID=rna3306|Name=rna3306|organism=Nannochloropsis gaditana|type=mRNA|length=1137bp|location=Sequence derived from alignment at CM002461.1:57569..58705+ (Nannochloropsis gaditana)
ATGAAGGAGCGCATGGCTTGCGTTGATCTCGGTAGATTTCTTGCCTGAGA
AGATGTAAAGCACtcaacttcctcccttcccgttcTTTCCATCAAGGGGA
CTGGTCGATTCGAAGTAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGC
TGCCCTCTCGCACCGCACGGGAGTCATTTCAGACTTCTCAGACCTACCAA
cacctctgcttcctccgccttccccccggccgcccagagaagggggaggg
agaagggaggagagtcTTCGcgttgagggaggaggaggggcggggcaggg
gagcaTGCCAATCATCGAGCTGCGACAACGCTCCCGGTACGTTGGAAATA
AAGTTGAGGAAGACCACATGGCAACCACGAACGCTAGCGATAGCGCCCTG
CGTGCACCAGTTGGTCGTCAGGAGTCGGGCCCTGCCGGTATGACTTCTTA
CCCCTTTGCCTCtgtctcccgccttccctgtctACCTTATATCGCCACAG
GGGCTACGTGGAACTCGGCGGGAGCGAAGAGGCGGTCTCtgcgggcgagg
acggggaaggctTCTACCACAGTGGCTAcgcgggcgaggcggcgggaAAG
AGCCTTCGGCTGGGTACAGGTAGTAACCGAGGTCGCTGTTTTCCCTCCAT
AAGCCCTGTCTTTCGCGTGGTATTGATGGAAGAAGCCCTGATTGTCTTCC
CTGCTCATTGCATGAACCCTCCAAGCTTGTTTGCACGGGAAGTGGCTCGC
CCATCCGACCTCCCTTCTGGTGCCCGTGTCCTGCGCCCTCTACCGCCCTC
AGTGCCCTCCATCGGGTTCGCGCCCTACCCTCCTTGACTCAACCCTTggc
tcttccacctcctcatccacgTCCTTGACCTCTCTCCAGCCCCTTTAGGC
GGGGGCGGCCCTTACACCAGCCACTACCAGGACGGCAGCGATGATGATTT
CTCCACCAGTGGACCGCAAGGCCCCGTCGGTACCTGGGCGCGTTTTCGAA
AGACCAGCCGAGAacggtgcctccctccctccctccctccctccctccct
ccctccctcggggcCTAGATACCTGCCGTTCCCtccgccatcctcccttg
tcctcagTTTGGTGTCGCCTGATCGCCGTTACAATGC back to topCoding sequence (CDS) from alignment at CM002461.1:57569..58705+ >rna3306 ID=rna3306|Name=rna3306|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002461.1:57569..58705+ (Nannochloropsis gaditana)
ATGAAGGAGCGCATGGCTTGCGTTGATCTCGGGGACTGGTCGATTCGAAG
TAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGCTGCCCTCTCGCACCG
CACGGGAGTCATTTCAGACTTCTCAGACCTACCAAcacctctgcttcctc
cgccttccccccggccgcccagagaagggggagggagaagggaggagagt
cTTCGcGGGCTACGTGGAACTCGGCGGGAGCGAAGAGGCGGTCTCtgcgg
gcgaggacggggaaggctTCTACCACAGTGGCTAcgcgggcgaggcggcg
ggaAAGAGCCTTCGGCTGGGTACAGCCCCTTTAGGCGGGGGCGGCCCTTA
CACCAGCCACTACCAGGACGGCAGCGATGATGATTTCTCCACCAGTGGAC
CGCAAGGCCCCGTCGGTACCTGGGCGCGTTTTCGAAAGACCAGCCGAGAa
cggtgcctccctccctccctccctccctccctccctccctccctcggggc
CTAGATGAAGGAGCGCATGGCTTGCGTTGATCTCGGGGACTGGTCGATTC
GAAGTAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGCTGCCCTCTCGC
ACCGCACGGGAGTCATTTCAGACTTCTCAGACCTACCAAcacctctgctt
cctccgccttccccccggccgcccagagaagggggagggagaagggagga
gagtcTTCGcGGGCTACGTGGAACTCGGCGGGAGCGAAGAGGCGGTCTCt
gcgggcgaggacggggaaggctTCTACCACAGTGGCTAcgcgggcgaggc
ggcgggaAAGAGCCTTCGGCTGGGTACAGCCCCTTTAGGCGGGGGCGGCC
CTTACACCAGCCACTACCAGGACGGCAGCGATGATGATTTCTCCACCAGT
GGACCGCAAGGCCCCGTCGGTACCTGGGCGCGTTTTCGAAAGACCAGCCG
AGAacggtgcctccctccctccctccctccctccctccctccctccctcg
gggcCTAGATGAAGGAGCGCATGGCTTGCGTTGATCTCGGGGACTGGTCG
ATTCGAAGTAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGCTGCCCTC
TCGCACCGCACGGGAGTCATTTCAGACTTCTCAGACCTACCAAcacctct
gcttcctccgccttccccccggccgcccagagaagggggagggagaaggg
aggagagtcTTCGcGGGCTACGTGGAACTCGGCGGGAGCGAAGAGGCGGT
CTCtgcgggcgaggacggggaaggctTCTACCACAGTGGCTAcgcgggcg
aggcggcgggaAAGAGCCTTCGGCTGGGTACAGCCCCTTTAGGCGGGGGC
GGCCCTTACACCAGCCACTACCAGGACGGCAGCGATGATGATTTCTCCAC
CAGTGGACCGCAAGGCCCCGTCGGTACCTGGGCGCGTTTTCGAAAGACCA
GCCGAGAacggtgcctccctccctccctccctccctccctccctccctcc
ctcggggcCTAGATGAAGGAGCGCATGGCTTGCGTTGATCTCGGGGACTG
GTCGATTCGAAGTAAGCAGCCAGGGTACGGAAAAAGGGCAACGTTGCTGC
CCTCTCGCACCGCACGGGAGTCATTTCAGACTTCTCAGACCTACCAAcac
ctctgcttcctccgccttccccccggccgcccagagaagggggagggaga
agggaggagagtcTTCGcGGGCTACGTGGAACTCGGCGGGAGCGAAGAGG
CGGTCTCtgcgggcgaggacggggaaggctTCTACCACAGTGGCTAcgcg
ggcgaggcggcgggaAAGAGCCTTCGGCTGGGTACAGCCCCTTTAGGCGG
GGGCGGCCCTTACACCAGCCACTACCAGGACGGCAGCGATGATGATTTCT
CCACCAGTGGACCGCAAGGCCCCGTCGGTACCTGGGCGCGTTTTCGAAAG
ACCAGCCGAGAacggtgcctccctccctccctccctccctccctccctcc
ctccctcggggcCTAG back to top
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