rna3302, rna3302 (mRNA) Nannochloropsis gaditana

Overview
Namerna3302
Unique Namerna3302
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1121
Alignment locationCM002461.1:50914..52519 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100438g4.1492.mrna
Orig protein idgnl|cribi|Naga_100438g4.1492
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:50914..52519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100438g4gene3179Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27377.1cds3293Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3302rna3302-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3302 ID=rna3302|Name=rna3302|organism=Nannochloropsis gaditana|type=mRNA|length=1121bp
TCCCTCCCTCCCTCCCTCCCCCAGGAACGAGGCCCTTCTCGCCTCCTCGA
TCCCTGGCTTTGCCCGGGACACCTTTGGCATGGAGCTGACAGCCGCCAGT
ACCACAACCTCTCCTTCTGCCCCGCCCTCCCTCCCGCCCTCCTTGCCGGA
CATGGGAAGGGAGGGGTCAGAGAGGGCAGGAAGGGAAGGAGGAGAGGCGG
GAGGGGAAGGCCACAGTGCGCTTTCCTCGTGTGTGGCGCTGGAGACGACG
TGTGGTGGTGGGGGAGGGATGGAATGAGGGAGAAGCACGACAGCGTGGTG
GAGGCCATGGTGGCGATTGGGTGGAGAGGGAAGCAGGTGGTTGACGATGG
GGGTGGTTCAGGCCATCCCAGCGAGATGAGAAGGAGAGCAACAGGGAATC
TGTCCCCTAGAGAAATCCACACGCGTGGATAAAGAGTGGAATATAAAGAG
AGAGGGATAGAGCATGGATCATACTGAAGGGGAGGGGAAGGATGTGAATA
ATTGAAGGCGCGTAGGGGGACTTATGGGATGTATTTGTGCCTTAGAGCGT
GGGGTGAGGGATGCTGTCGACGGTAAAGAAGAAATAGGAATGGGGATGGT
CGAGGTGGGGGGAGGGGAGGGGGCTGGTTTTGGTCATGGGTGCACATTCG
AGAAGGGACGGACGGAATGCATGGAAAGGAAAGCAGGAAGGCAAGCAGAG
AAAAGGGAGGAAGAGGGTCATCTCATGAGGTAGGGAGACGACGAGGTACC
CGCAGGTCGAGCTAAGATGAGATGATTTGCAAATTACAGAGGTAAGGACC
AGATTCTTTCTACTCTAAGGAACTCTAGGACCTTTGCAATGGTGGTGTAG
CGTGAGGCGTGACTCCTGTCACCATGTGAAGACATGGCCAAGGTTGGAAA
ACTCTATTCCTGAGTTGTCTCCCGTATTCAGTAAGAACAGGAGAGAAACC
AAAAACGCGGTATTCATGCTCCATAATATGTGTTGAGCACGGCCGCATCT
GAACTTTATGCTTTTCGCAAATATTAGTTCAGTGGCGACCCCCTCATCAA
ATTTCTTTTCGTGATCTTTGTGGGAAAAAGGTCTGATAACAAGAAAGTAC
CACCCAATCGCGAGCGAGAAA
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protein sequence of rna3302

>rna3302-protein ID=rna3302-protein|Name=rna3302|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MYLSPEPFDDLSSIAQPFPSFFLSASSSLIGRSLVPSFLPASHCSPLPAS
TAFFPPQLLPPSFPSRWPSTFSVLPSAAVPQPIAALPSPPPTPLFIHSSP
LSPTCSLVSCPIRVFATPPSNPSPVTSASTLPSLWLGI
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mRNA from alignment at CM002461.1:50914..52519-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3302 ID=rna3302|Name=rna3302|organism=Nannochloropsis gaditana|type=mRNA|length=1606bp|location=Sequence derived from alignment at CM002461.1:50914..52519- (Nannochloropsis gaditana)
CATGCTTATTTTACGAACTTTTCTACAAGCAGTACTCTCGACACCCATTT
TTCCCGTAATAATGATGTCTTTTTTTTTGAAGAAAAATAACAAATGAGCT
TACTTTACAGACCTGAAACACTTTTTTGGAGCCATTTATAACCAGAAACC
GCTCCATGAAAAAGTAAAGAATCATGCAAGAAAACCTTCCGCCACCTGTG
CCCAGATCGGTAAACCTTGAAAAGTATCGATCTACTGTCGCAGTGGCACG
CATACAATTGACCCTATTCTCTATATATTGTTTATATATGACCCTATATC
TCTTTTAACGCGTTCAAAAGCATTTTGGGGCTGATAATTTCCTTCGTTCT
GCGTTGTTTTTCAAGCTTGCTGTAACTCCCTCTGTAAGAGCGTGACGCCG
CTAACTCACTCTCGCACCGTAGCATTTCCCCTCCCTCTCAAAGCGTCAGC
ACTTTTGATTTTTCACCACAAAAACGAAAAAGCTGCCTCGTCGTTCATCA
TGACTTCGATCCCTTCCTCTTCCCCTTCTTCCGCCGCACTTTCCCTCCCT
TCCTCCACGTCAATGAGCTGCCCTGCCTTGAGCAATTCTGCTATCTCATC
CATCTCTACTGCGGCACTTTCTCCGGGAATCGAGCTTTCTATTGCCTCTT
TTTCGCATGGACGTTCAGTCATGATCCGTGTGTGAAACGGCTGCTTCTTT
TTAGGCTCGGGATCGTTGTCTGACATCAGGTACGAATCTAGCATGTACCT
TTCTCCGGAACCGTTTGATGACCTCTCCTCCATCGCCCAGCCTTTCCCCT
CTTTTTTCCTATCTGCCAGCTCTTCACTCATTGGACGATCGCTCGTTCCC
TCCTTCCTTCCTGCCTCCCATTGCTCCCCACTTCCAGCATCCACTGCCTT
CTTCCCTCCCCAGCTGCTTCCTCCCTCCTTCCCCTCCAGGTGGCCCTCCA
CGTTCTCTGTGCTTCCCTCCGCGGCTGTCCCACAGCCCATAGCCGCATTG
CCCTCCCCTCCCCCTACTCCACTCTTTATCCATTCCTCTCCCCTATCTCC
CACCTGTTCGCTGGTATCGTGTCCGATCCGTGTATTCGCAACGCCACCCT
CGAATCCCTCCCCCGTTACCTCCGCTAGTACTCTCCCCTCCCTCTGGCTC
GGCATCTGACCATTCCCTTCCCCCATGATTAGCCGCCCGTCTCCCCGCTC
CGCCGTGTCCACCTCCATTTCTTCCTCCTCCTCGCTACTCACGGAGCACA
CGCTTTCCTCCTCGCTCTCTTCGTCCCTCTCCCCTTCGCTTTCCTCCCTC
TCCTCCCCTCCCCCTACCTCATCTTCGGTTGGACGCTTCCTCTTCCCTGT
CCCCTCCTCCTCTCTGGCCCTGAAGTACACCTCCGGCGTCACCTCCTTCC
CGTCCTCCACATTCCTGAAGAAAAGCAGCCTCTCGTCCCCCTTCATCCAG
CCATGCCGCTGAGGCTCTGCTACCACCTCCGTGGCCGCTATTGCTGTCTC
TTCCCCTCCCGCGTCGGCGGCAAGAGTGGCAGGGTAGACGAAGTACGGCA
CCCACTGGGCGGACAGGGGTTAAGGAAAGGAGGAAAGAACAAAAAATCAG
AGAAGG
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Coding sequence (CDS) from alignment at CM002461.1:50914..52519-

>rna3302 ID=rna3302|Name=rna3302|organism=Nannochloropsis gaditana|type=CDS|length=417bp|location=Sequence derived from alignment at CM002461.1:50914..52519- (Nannochloropsis gaditana)
ATGTACCTTTCTCCGGAACCGTTTGATGACCTCTCCTCCATCGCCCAGCC
TTTCCCCTCTTTTTTCCTATCTGCCAGCTCTTCACTCATTGGACGATCGC
TCGTTCCCTCCTTCCTTCCTGCCTCCCATTGCTCCCCACTTCCAGCATCC
ACTGCCTTCTTCCCTCCCCAGCTGCTTCCTCCCTCCTTCCCCTCCAGGTG
GCCCTCCACGTTCTCTGTGCTTCCCTCCGCGGCTGTCCCACAGCCCATAG
CCGCATTGCCCTCCCCTCCCCCTACTCCACTCTTTATCCATTCCTCTCCC
CTATCTCCCACCTGTTCGCTGGTATCGTGTCCGATCCGTGTATTCGCAAC
GCCACCCTCGAATCCCTCCCCCGTTACCTCCGCTAGTACTCTCCCCTCCC
TCTGGCTCGGCATCTGA
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Synonyms
Publications