rna3300, rna3300 (mRNA) Nannochloropsis gaditana

Overview
Namerna3300
Unique Namerna3300
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2010
Alignment locationCM002461.1:45738..46629 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100328g1.174.mrna
Orig protein idgnl|cribi|Naga_100328g1.174
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:45738..46629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100328g1gene3177Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3300rna3300-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27384.1cds3291Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3300 ID=rna3300|Name=rna3300|organism=Nannochloropsis gaditana|type=mRNA|length=2010bp
ATGGGTTTGGACACGAGTCGAGATACCACCGCATGCCCACGAAATAATAT
GGACGCGCTTAAGGCTGCTTTTGGGAAACAATTGGAGAAGCAGGCTAACA
AAGTCATTGGCGATGTGCTTGGGAAAGTCACGGGCGGCAATGTCAAGATG
CCAGGGGCTCTCTCTGAGGAAGAAGCCCCTGCCCCAGTCCCCTTCTCCAG
CGATTGTTCCGGCAGGAAAAAGGCCGTTTTTGTCGGAATCAACTACTTCA
AGACCAAAGCCGAGCTCCACGGCTGCATCAACGACGTGAAGAACGTGCAG
GCGTTTATCATGGAGCAATACGGCTTCAGTCGCGAGAACATCAAGGTCCT
CACCGATGAACCTGCGTCTGGGAACGAGCCGCCGACTCGGACCAACATCC
TGGATGCCCTTCGGTGGTTGGTGGAGGGGGCGACAGCAGGCGACTCCCTT
TTCTTTCACTACTCGGGCCACGGCGGAACAGCGCGAGACCTCGACGGGGA
TGAGGTGGATAATTTCGACGAGACCATTCTACCCGTGGACTTTGAGGCCG
CCGGGCAGATCCTGGACGATGAAATCCATGTACGAGGGAGGGAAGGGGGG
CGGCAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGAGAGAGA
GAGAGAGAGAGAGAGAACAGGAGAGACGTGTCGCAAGGATCGAATGGAAG
AGGGAAGGAGAAGAGGGAAGAAGGAAAAGAAAGAGAGCAAGAAAAGCAGA
GACGTGCCGCAAGGATGGAATGGAAGGGAGAAGGGGGGGGCGAAAGCCAG
GAAGGGTCCCGGCAAGATCGGTGGACAGACCCCTCTTTCAAGGTTTCACA
ATCTTCTCTTTCTCTCTTGCCCTGACTATCGCCCCCTCTCCTTTCCTACC
TCCTACGCCTACCCCCAGGCGTACGCTGCGGAGGAATTGTACCGGAGGGA
ATGGCGCTTCCACAAGGAAATGAAGCTGTGGGTGAAGTTGGAGAAGGGAG
AGTATTTCTACTTCGACATAAATAACTGGACGAAGCGCTCCTTCCCTCAG
ACCACCCCTGCGAATATCTCTGCCATTACTTCAGGTCTCTTGAGCGAGGA
GGACGTCAGAATGCAATTTCCAGCGGGGGGAGGGGCACCTTTGCCCCTGA
CTGCTGCGTCCGTCGTCCAAGGAGGTGCCGTGGCAACTACCTCCCCCTCT
TTGTCGGGCATGCTGCCGCCACCAATGATGGGTCAAGGGATGGGAGGAGA
TGCGAAGGGACAGGAGAAGTCATTGAGGGGAGATGACAAGCCAAGAAAAC
GACTCCGTGCTTGGGAGACGGAATTTATAAAAGGAATCAAAGCAAGCATG
GAGACTACTTTCTGTATCTTCTACCGGGCCATCGACGAAATGAACATCTC
CCAAGAGGGGGACTTTAAAACGACCGAAGGCCAAGTAATTGGGGTAGCCC
CGACGTCGATTCCTGACTATGAGGGTGTCAGAAAGCGCAAGAATATCGAG
ACCTCCAGGACAGCCGAGGATCGTGTAAACAGGCAATTAATACTGGCTGG
GGTCATGAATCCTGAGGAGAAGAGCTATTGTCTCCGCGCAGGCCTCGCAA
AGGGATTTTACAATTTCAAAGGCCGGGTTGAGGATCTTGAGCGCGTCATT
TGGCGGGGAAAATGCATCAATAAGAAGTGCCGCGAATCGCAAGCAGCAAC
GGTGAGAATGCTATTGGATCAACCCGACAATGGAGCTGACCACATTCTTC
ACAAGGCAAAGGGTGCTGTGGTGGTCTGCTCAGTCTGCGAGGAGAGGATG
TATGTGACGCGCCTGTGCGAGGGCCGGCCAGAGAAGGACACAGGAAAGTT
CCATCATCATTGCAAGGATTGTGGAGGCTTGGGTATCTGCACACGAAACG
CAACCAACGCGCATTGTCGATATTGCCACCACCATTTCGACACGGGAATA
TTCCAAACAGCCCAGTGCCCATGCAAGGAGACAGTGGTTGTTTGCTGCAG
CGTTGCGTAA
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protein sequence of rna3300

>rna3300-protein ID=rna3300-protein|Name=rna3300|organism=Nannochloropsis gaditana|type=polypeptide|length=178bp
MASPMPAPSPTGSAADSNASAAAAGTGNTGEGQEGGSIGMETAQTCGSEE
GFSSLMDDEMMINDLESFDGFGHQPADDVLSWLLVNADNINAGAMDFLGG
GDVGLPLSGYTDMVSPPTSLPVVRLPSTPQAPASLQTHQGLGEEVNPTPA
PPASYPPPPELPYALEPEAPSASTMVAR
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mRNA from alignment at CM002461.1:45738..46629+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3300 ID=rna3300|Name=rna3300|organism=Nannochloropsis gaditana|type=mRNA|length=892bp|location=Sequence derived from alignment at CM002461.1:45738..46629+ (Nannochloropsis gaditana)
TATCCCAGGTAGTTTGTCATGGCCTCACCCATGCCGGCTCCATCTCCCAC
CGGAAGTGCAGCCGACAGCAATGCAAGtgccgcagcagcagggaCTGGGA
ATAccggagaggggcaggagggcgggagtaTTGGCATGGAGACAGCGCAG
ACATGTGGAAGTGAGGAGGGTTTCTCCTCGCTCATGGATGACGAGATGAT
GATCAACGACCTGGAGAGCTTTGATGGATTTGGACACCAGGTGcggacga
aggaaggagagggagaggcgagcccagagggaaagggaaagcgtgGATTG
AACAAGCAGGGCTGATGAGTAAGATGTAAGGATGTTAActaaggagagag
aggcaagcATATAAATCACACCATTCGGTCTCTCCGtctctgtcctcctc
cctccagcccgcCGACGATGTCTTGAGCTGGCTTCTGGTCAACGCCGACA
ATATCAATGCGGGCGCCATGGACTTCCTCGGTGAGACGGCGATGGGAAGG
ATGTAGcatggggaaaaaagggacgGGGGGCGGCCTCTAGCGCACGACGT
GGCCAGGTGGGGCCCACGACCATATCCTaacccgtccctcctccctccct
ccctccctccctccctccctccctccctccctccctccctccctccgcag
gCGGCGGTGACGTGGGCCTGCCTTTGTCCGGCTACACCGACAtggtctcc
ccccccacgtccttaCCCGTCGTCCGCTTGCCCTCAACCCCTCAGGCACC
CGCGTCCCTCCAAACTCATCAAGGCCTAGGCGAGGAGGTGAACCCGACGC
CCGCACCCCCGGCGTCTtaccccccgcccccggagCTGCCATACGCCCTC
GAGCCCGAGGctccgtccgcctccactaTGGTTGCTAGGTAG
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Coding sequence (CDS) from alignment at CM002461.1:45738..46629+

>rna3300 ID=rna3300|Name=rna3300|organism=Nannochloropsis gaditana|type=CDS|length=1611bp|location=Sequence derived from alignment at CM002461.1:45738..46629+ (Nannochloropsis gaditana)
ATGGCCTCACCCATGCCGGCTCCATCTCCCACCGGAAGTGCAGCCGACAG
CAATGCAAGtgccgcagcagcagggaCTGGGAATAccggagaggggcagg
agggcgggagtaTTGGCATGGAGACAGCGCAGACATGTGGAAGTGAGGAG
GGTTTCTCCTCGCTCATGGATGACGAGATGATGATCAACGACCTGGAGAG
CTTTGATGGATTTGGACACCAGcccgcCGACGATGTCTTGAGCTGGCTTC
TGGTCAACGCCGACAATATCAATGCGGGCGCCATGGACTTCCTCGgCGGC
GGTGACGTGGGCCTGCCTTTGTCCGGCTACACCGACAtggtctccccccc
cacgtccttaCCCGTCGTCCGCTTGCCCTCAACCCCTCAGGCACCCGCGT
CCCTCCAAACTCATCAAGGCCTAGGCGAGGAGGTGAACCCGACGCCCGCA
CCCCCGGCGTCTtaccccccgcccccggagCTGCCATACGCCCTCGAGCC
CGAGGctccgtccgcctccactaTGGTTGCTAGGTAGATGGCCTCACCCA
TGCCGGCTCCATCTCCCACCGGAAGTGCAGCCGACAGCAATGCAAGtgcc
gcagcagcagggaCTGGGAATAccggagaggggcaggagggcgggagtaT
TGGCATGGAGACAGCGCAGACATGTGGAAGTGAGGAGGGTTTCTCCTCGC
TCATGGATGACGAGATGATGATCAACGACCTGGAGAGCTTTGATGGATTT
GGACACCAGcccgcCGACGATGTCTTGAGCTGGCTTCTGGTCAACGCCGA
CAATATCAATGCGGGCGCCATGGACTTCCTCGgCGGCGGTGACGTGGGCC
TGCCTTTGTCCGGCTACACCGACAtggtctccccccccacgtccttaCCC
GTCGTCCGCTTGCCCTCAACCCCTCAGGCACCCGCGTCCCTCCAAACTCA
TCAAGGCCTAGGCGAGGAGGTGAACCCGACGCCCGCACCCCCGGCGTCTt
accccccgcccccggagCTGCCATACGCCCTCGAGCCCGAGGctccgtcc
gcctccactaTGGTTGCTAGGTAGATGGCCTCACCCATGCCGGCTCCATC
TCCCACCGGAAGTGCAGCCGACAGCAATGCAAGtgccgcagcagcaggga
CTGGGAATAccggagaggggcaggagggcgggagtaTTGGCATGGAGACA
GCGCAGACATGTGGAAGTGAGGAGGGTTTCTCCTCGCTCATGGATGACGA
GATGATGATCAACGACCTGGAGAGCTTTGATGGATTTGGACACCAGcccg
cCGACGATGTCTTGAGCTGGCTTCTGGTCAACGCCGACAATATCAATGCG
GGCGCCATGGACTTCCTCGgCGGCGGTGACGTGGGCCTGCCTTTGTCCGG
CTACACCGACAtggtctccccccccacgtccttaCCCGTCGTCCGCTTGC
CCTCAACCCCTCAGGCACCCGCGTCCCTCCAAACTCATCAAGGCCTAGGC
GAGGAGGTGAACCCGACGCCCGCACCCCCGGCGTCTtaccccccgccccc
ggagCTGCCATACGCCCTCGAGCCCGAGGctccgtccgcctccactaTGG
TTGCTAGGTAG
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Synonyms
Publications