rna33, rna33 (mRNA) Nannochloropsis gaditana

Overview
Namerna33
Unique Namerna33
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length610
Alignment locationCM002455.1:102693..103304 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101995g1.957.mrna
Orig protein idgnl|cribi|Naga_101995g1.957
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:102693..103304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101995g1gene31Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30640.1cds33Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna33rna33-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna33 ID=rna33|Name=rna33|organism=Nannochloropsis gaditana|type=mRNA|length=610bp
CCTCTTTTTCTCGTTTTATATTTTCCTCTTATTCAACCATTGCGTAAATA
GGACTTATGTTCCTTCTTTCTCCTCTCTTCTCATGTCTTCTTGTCCTTCT
TTGCCTCCCTCCCTCCCTCCCTTCCTCCCCTCCTCCCTCCCTCCCTCTCC
CAGGCGGCACCTTGGCCATCACTGACAACGACCCGCGCTCCCCCGTCATC
CAAGGCCTCCCCAAACCCATCGCCCTGCTCATGAAGAGCACCGAGCCCTT
CTCGGACGAATACTTCAGCCTGGACATGGAGGCTATGCTGGAGGAGGTGG
GCTTCGAAGCGGTCGAGACGGTGGCTACCGACCCCCGGCATCGGACCATC
CTGGCGACCAAACCCCGGTCGTAACCCCGAAGCGCGGGCGGTATTTTTCG
GGGATTTAACCACGCCTGGCCCCAGACATCGGTGATTTCTCGGCCGTCCT
CTGCTTGAAAAGGCCGATGGATGGGGTTGAAGAAGGGAAGGAACAGGGGG
CGGAGAAGGCAGGGGTACCATAGGCTGATGGAGCGTCCAATATGGCGTAG
GATGCATGCATATTAATGGGCACGGTCGGCAAAAGAAAAACAAACGATCG
AAGCCTTTCT
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protein sequence of rna33

>rna33-protein ID=rna33-protein|Name=rna33|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MDINMVKDKKMGMKKMRSRRRRGWERKKEGKKNDVKELWRGKGGKRAGKR
RLVNECSKTKGMNEAIVRPRVDTKGAERSGVP
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mRNA from alignment at CM002455.1:102693..103304-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna33 ID=rna33|Name=rna33|organism=Nannochloropsis gaditana|type=mRNA|length=612bp|location=Sequence derived from alignment at CM002455.1:102693..103304- (Nannochloropsis gaditana)
CTGATGTCTGCCCTCTGACCATGTGGCATATCTCTTTCACGCCCGCCCTC
GCTCCTCAACCCCTCCTTTCGTCCCTCACTCTCTTCCCTCCTCCCCGCAG
AGCGAGGAGGAATTCGTCTCCATCATGAAGAATTTAAACCTCCCCTACCC
GAAAAAGATCGACGATGCCCTCCCCAAGAACCTCGTCTGTGGCTCGTAGG
CAGTCCTCTCTCCCTCCTTCCCTCCCTCCCTCCCTTTTCCCTTTTAAGCG
GGCTCTGGACAAGGAGCTTCTAAATAATAGGGCGGGAAGGAGGGCGGGAA
GGAGGGCGGGAAGGAGGGAGTGCAAGTCCTAAGCGAGCCGGCGGAGGCGC
GGTGTATACGTATATGGACATAAACATGGTAAAGGATAAGAAGATGGGAA
TGAAAAAAATGCGAAGTAGGAGGAGGCGGGGATGGGAACGGAAGAAGGAA
GGAAAGAAGAATGACGTCAAGGAACTATGGCGAGGGAAGGGAGGGAAGAG
GGCGGGGAAGCGGAGGCTTGTGAATGAGTGCTCGAAAACAAAAGGAATGA
ATGAGGCGATCGTAAGGCCTAGGGTCGATACAAAAGGTGCTGAGAGGTCC
GGCGTGCCCTGA
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Coding sequence (CDS) from alignment at CM002455.1:102693..103304-

>rna33 ID=rna33|Name=rna33|organism=Nannochloropsis gaditana|type=CDS|length=249bp|location=Sequence derived from alignment at CM002455.1:102693..103304- (Nannochloropsis gaditana)
ATGGACATAAACATGGTAAAGGATAAGAAGATGGGAATGAAAAAAATGCG
AAGTAGGAGGAGGCGGGGATGGGAACGGAAGAAGGAAGGAAAGAAGAATG
ACGTCAAGGAACTATGGCGAGGGAAGGGAGGGAAGAGGGCGGGGAAGCGG
AGGCTTGTGAATGAGTGCTCGAAAACAAAAGGAATGAATGAGGCGATCGT
AAGGCCTAGGGTCGATACAAAAGGTGCTGAGAGGTCCGGCGTGCCCTGA
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Synonyms
Publications