rna3296, rna3296 (mRNA) Nannochloropsis gaditana

Overview
Namerna3296
Unique Namerna3296
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length213
Alignment locationCM002461.1:30107..30623 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100185g1.8942.mrna
Orig protein idgnl|cribi|Naga_100185g1.8942
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:30107..30623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100185g1gene3173Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3296rna3296-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27388.1cds3287Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3296 ID=rna3296|Name=rna3296|organism=Nannochloropsis gaditana|type=mRNA|length=213bp
ATGCGATGGGGGGCGAATCTAGAACTTGAAAAGACGAATCCTGGACACGA
CCATGTGCGACCTCTGGGACAAGAGCATGGCTGGAAAGCTTCGATCGTCC
AAATGGTGAGAGCAAAGCACATAGACATGGAAGGCTCCCGCTTCTACTTA
TTTTATCGTGACTGTTGGATTCCAAGGCTCACTACCGTCCTGAGACGTAC
ATTGAAAATTTAG
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protein sequence of rna3296

>rna3296-protein ID=rna3296-protein|Name=rna3296|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MLLPAWRERGRRRWRVRKMLLPESPTRFWVVPASSPPRARRTSRKCTVHL
DNLMLLKHITSDVNGIIIKKRIEGLRYRVSCLPHVRSDTKEYIIHGETRK
EEGPVLEKHLQGDIMTFGVHFYSGYTHEPKRGEGVDSLQRSVRLLNVREA
H
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mRNA from alignment at CM002461.1:30107..30623-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3296 ID=rna3296|Name=rna3296|organism=Nannochloropsis gaditana|type=mRNA|length=517bp|location=Sequence derived from alignment at CM002461.1:30107..30623- (Nannochloropsis gaditana)
ATGCTACTGCCGGCTTGGAGGGAGAGAGGGAGGAGGAGATGGAGGGTGAG
AAAGATGCTACTTCCGGAGTCTCCTACACGCTTTTGGGTAGTGCCGGCGT
CATCGCCCCCTCGGGCCAGGCGTACATCACGCAAGTGTACGGTGCATCTG
GATAATCTCATGCTTCTCAAGCATGTCTTGCGGCTCAAGTGATGGATATG
CTACTCCGTCCTTTTGTGCCGTGTAATGTACTAAGATTACTTCTGACGTC
AATGGAATAATTATCAAAAAGCGAATCGAAGGTCTTCGATATCGCGTGTC
ATGCTTACCACATGTCAGGAGCGACACGAAGGAATATATAATTCATGGGG
AAACAAGAAAAGAAGAGGGGCCTGTCTTGGAGAAGCATTTGCAGGGGGAT
ATTATGACCTTCGGTGTGCACTTCTATTCCGGGTACACTCATGAGCCAAA
AAGAGGCGAGGGAGTCGATTCTCTTCAACGTTCAGTCAGACTTTTAAATG
TGAGAGAGGCTCACTAG
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Coding sequence (CDS) from alignment at CM002461.1:30107..30623-

>rna3296 ID=rna3296|Name=rna3296|organism=Nannochloropsis gaditana|type=CDS|length=912bp|location=Sequence derived from alignment at CM002461.1:30107..30623- (Nannochloropsis gaditana)
ATTACTTCTGACGTCAATGGAATAATTATCAAAAAGCGAATCGAAGGTCT
TCGATATCGCGTGTCATGCTTACCACATGTCAGGAGCGACACGAAGGAAT
ATATAATTCATGGGGAAACAAGAAAAGAAGAGGGGCCTGTCTTGGAGAAG
CATTTGCAGGGGGATATTATGACCTTCGGTGTGCACTTCTATTCCGGGTA
CACTCATGAGCCAAAAAGAGGCGAGGGAGTCGATTCTCTTCAACGTTCAG
TCAGACTTTTAAATGTGAGAGAGGCTCACTAGATGCTACTGCCGGCTTGG
AGGGAGAGAGGGAGGAGGAGATGGAGGGTGAGAAAGATGCTACTTCCGGA
GTCTCCTACACGCTTTTGGGTAGTGCCGGCGTCATCGCCCCCTCGGGCCA
GGCGTACATCACGCAAGTGTACGGTGCATCTGGATAATCTCATGCTTCTC
AAGCATATTACTTCTGACGTCAATGGAATAATTATCAAAAAGCGAATCGA
AGGTCTTCGATATCGCGTGTCATGCTTACCACATGTCAGGAGCGACACGA
AGGAATATATAATTCATGGGGAAACAAGAAAAGAAGAGGGGCCTGTCTTG
GAGAAGCATTTGCAGGGGGATATTATGACCTTCGGTGTGCACTTCTATTC
CGGGTACACTCATGAGCCAAAAAGAGGCGAGGGAGTCGATTCTCTTCAAC
GTTCAGTCAGACTTTTAAATGTGAGAGAGGCTCACTAGATGCTACTGCCG
GCTTGGAGGGAGAGAGGGAGGAGGAGATGGAGGGTGAGAAAGATGCTACT
TCCGGAGTCTCCTACACGCTTTTGGGTAGTGCCGGCGTCATCGCCCCCTC
GGGCCAGGCGTACATCACGCAAGTGTACGGTGCATCTGGATAATCTCATG
CTTCTCAAGCAT
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Synonyms
Publications