rna3295, rna3295 (mRNA) Nannochloropsis gaditana

Overview
Namerna3295
Unique Namerna3295
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1475
Alignment locationCM002461.1:29289..29592 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100185g2.8940.mrna
Orig protein idgnl|cribi|Naga_100185g2.8940
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:29289..29592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100185g2gene3172Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3295rna3295-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27386.1cds3286Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3295 ID=rna3295|Name=rna3295|organism=Nannochloropsis gaditana|type=mRNA|length=1475bp
TCTCTTCCTTAAAGCCCCGGTGATCCTTCTTCATCCGGGTCTTTTTTAAA
AGTGAGTAATGGTGTGCAAATATGAGGCAAATCTGCCGGTATGGAGTTTT
TAGGTTTCTTGTATCTTGGGGCAAAAAAGACGGGTTGCAGTTGATCGCAC
GTCGACTTCCGTGAAGATACTAACGAGCATAGCAGCCTTTCTTCTCGGCG
CCACCATGACCTTCCCGGTTATCTCTCACCCGTTCCGTTTCAAATTCTGA
CACATCCAGCAAATAAAGGCATCATGAAGATCTTTTCTTTTGCGCTTGCG
GGCATCACATGTTCTGCGGCGGTTGCTCAGACGTTGCGTGGTCTAGCAGC
TTGGGCTGGTGAAGAGATAGGCGTCAACACAGCATCAGCCAGAGATGCCT
TCACGAGCCTGGAGGACCCTATGCGCGTGGCGGCCAATACCGTTCGAGCC
GAGCACGGACTCGAACCTCTCGCGTCCGACCTGAGCCTCTCACGCACCGC
TCTGGACTTGGCGAGGGAGCTGGGTACGCAGGATAATAAAGAAGCAATGT
TGAGTCCGGAGGTGGAGAGCAAGTTATTGGAACGTGCTCGGGCGAACGGA
TTCACGGGTACATCCGTGAAAGCAAATATCTTCACCATTGATGCCAAGGC
GGAGAACCTAACGGCCACAGACACAGAGGCTCATGCACTCGCCGCAGTGG
CTTCCTGGGCTGGTGGGAAGAACGCGACAGCAGGACTGGATGTAAACGAG
CACGAGCACGCCGCTACTGCAGGGTTGAAAGTGGATGGACACGAAGATGT
CAGTGATCATAGTGATGAAGGAGGCGTGAAAGAGGTCAAGGGCGCCGCGG
CTGGATTGGAAGTGGGGGAGCACGCGGAGGACACCGAGGAGGACACTGAA
GAGGACGAGGAGGATGAGGAGGATGAAAAGGATGACAGTGACAGTGACAG
TGACAGTGACAGTGACAGTGACAGTGATAGTGACGACGATGACGACGATG
ACGACGATGACGACGATGATGACGATGACGACGACGATGATGATGACGAG
AAGGACGCGACAGCTGCCCTTCTGGGAGACTTCAACGTTGTTGGCAGTGC
AGGCGTCATTGCTCCATCGGGCCAGGCCTACATTACGCAGCTGTACGGTG
TTTCTCCGTAGAAGCTGGGAAAGGCCGTTTCTTAGAACATGATCGAAGTA
TATGTGCGGTCACCGCTACTATCTGATGAATATTCTATCGTAAAAGCGCT
ACGATGCAGGCGTCAGCAATGAGTGGGCAAGGGCTTGCAGATTTGCTTGG
ACGGCATAAGGCAGGTCACTTACTTTATTCTTGGAGGTGATAAATCATGC
TATATATAATGTATGTGAAGAAAGGCAGGGCACCGCGTGTCGTTGGACTG
AAACGAATAAATGTTGGTTATTAAGCTCGTTAATTCTTTGCAGATAGCCT
TCTTGGCCTTTTTAATTCCAGCCCC
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protein sequence of rna3295

>rna3295-protein ID=rna3295-protein|Name=rna3295|organism=Nannochloropsis gaditana|type=polypeptide|length=70bp
MRWGANLELEKTNPGHDHVRPLGQEHGWKASIVQMVRAKHIDMEGSRFYL
FYRDCWIPRLTTVLRRTLKI
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mRNA from alignment at CM002461.1:29289..29592+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3295 ID=rna3295|Name=rna3295|organism=Nannochloropsis gaditana|type=mRNA|length=304bp|location=Sequence derived from alignment at CM002461.1:29289..29592+ (Nannochloropsis gaditana)
ATGCGATGGGGGGCGAATCTAGAACTTGAAAAGACGAATCCTGGACACGA
CCATGTGCGACCTCTGGTAGGAATGCTTTCAACGCGTGAAGACGTCAGAA
CGCGAAAGACGTGACACATGCGTTTTTCACGCATTAAAATAATACGCCCA
CTACGAGGGACAAGAGCATGGCTGGAAAGCTTCGATCGTCCAAATGGTGA
GAGCAAAGCACATAGACATGGAAGGCTCCCGCTTCTACTTATTTTATCGT
GACTGTTGGATTCCAAGGCTCACTACCGTCCTGAGACGTACATTGAAAAT
TTAG
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Coding sequence (CDS) from alignment at CM002461.1:29289..29592+

>rna3295 ID=rna3295|Name=rna3295|organism=Nannochloropsis gaditana|type=CDS|length=426bp|location=Sequence derived from alignment at CM002461.1:29289..29592+ (Nannochloropsis gaditana)
ATGCGATGGGGGGCGAATCTAGAACTTGAAAAGACGAATCCTGGACACGA
CCATGTGCGACCTCTGGGACAAGAGCATGGCTGGAAAGCTTCGATCGTCC
AAATGGTGAGAGCAAAGCACATAGACATGGAAGGCTCCCGCTTCTACTTA
TTTTATCGTGACTGTTGGATTCCAAGGCTCACTACCGTCCTGAGACGTAC
ATTGAAAATTTAGATGCGATGGGGGGCGAATCTAGAACTTGAAAAGACGA
ATCCTGGACACGACCATGTGCGACCTCTGGGACAAGAGCATGGCTGGAAA
GCTTCGATCGTCCAAATGGTGAGAGCAAAGCACATAGACATGGAAGGCTC
CCGCTTCTACTTATTTTATCGTGACTGTTGGATTCCAAGGCTCACTACCG
TCCTGAGACGTACATTGAAAATTTAG
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Synonyms
Publications