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Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100185g3.8944.mrna |
| Orig protein id | gnl|cribi|Naga_100185g3.8944 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:27245..29099 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3293 ID=rna3293|Name=rna3293|organism=Nannochloropsis gaditana|type=mRNA|length=2324bp
CAGCAATTCTTCAGAATCATCATATCAACCGCCTTGTTTCAAAATTACAT
AAAACAGAACAGCGACGACTTTCCTATCAAAGTAAACATTACTGTCGGTG
GAAAGGCACACCTTTTGAACATGTCATAGCGAAGCAGTCGAAGCCAGTTT
TACGTCCGTCTCGAGATCGATCATGCGTCCACACTCTACCCATCAGTATG
CCACCCGGAGTGCCTTGAGCACAGGGAATGGTAGATTTACCCTCATTTTG
CGGTCCATTGTTTTCCTTTTTTTCCTATCTGCATATCTATTGGGAAATTT
GTGGATGACATTACCCATGGTCCCTCGAGAAATGGGAAGAGAAACAAGTG
CTGACGCGAGACCTCGATACAGCGTGCTACGACACGGCAATCACGGTTCT
GCTGCTTGGTCGCTAAGAAATCGTAACATGGAGGAAACTTCTGCGCATGT
GCAGTCCTTTGAGGCCGCTAGCTCAGACTTGAAAGCGCCCGACGGGACTG
AAAACGAGGCGTTGGGCAGGTACATTGAACGATCCGGTAATGTGGTAGGA
ATAGAAGCAGCAGACACAGAAATGAATGCTTTGCTCGCAAGAGAGAAAAG
TGGTGTAATCAAAATTCAAGACCAAGATGAAGAAGGTGAAAATCTGGAAG
AGCTGGAGGAAAATGCGGTTGAAGACTTTGGGCCAATCGAAGAGGATGGA
GAGAGGAGCCTTTCCTCCTCCTCTTCTTCCTCCACCTCCGCCCCTACCTC
AACCTCGCCTTCCTCCATCTGGCCCCCTCCATCATGGGCGTGGCCCCTCG
ACCCCGACCATGAAGCCTATGGGAGAGACATGTTCAAGATTCGCTTTCCC
CCTTCCGCCGCCGCCTCCAATGCAACTTGCACGGGCGCTGGCAGCCTCGA
TGAGGACTTGGACTTCACCCTTGTCTCCCAAAGCTCGCCTGACAGAATCT
GGATGCTCCCTCATATCTGTGAGCGGTGGGAAGGGCCCATAATCGTCGCC
ATCTTCATGCACGGCTTCACCGCCGAGCACGACGCCTTCATGGCAAACCT
GAAGTGCCCCCAGCTGCAATGTCTCCCAGTGCACCCCTCTGTCCCTGCCT
CCAGCTCCATTCCCGCCTCAGTATGGGCCGCACCAAACCTATATCCTGTC
AATGCCTTGCGAAATCTCGCGATCTCGGAAGTGAGAACGACGCACTTCCT
TCTCACGGACATGGACCTGTGGCCTTCCCGCCGTCTCTACCCTCTCCTGA
AGCACCTGTCGTCGAAGAGGGAGATAGACAGTAAGGGCACGCGCGAGACG
TTTCTGGACCCGCTTCAGGCGCTAGTGGTGCCTGCTTTTAGTTATCTTGG
ACAAGTAACTGGAGGCGAGAAGCAGGAGGCCAGGGAGGACAAGGTGGGAG
GGATGCCGGACGACCAGAGGGGCCTGGTGGAATGCTTGTGGAAGGGAAAC
TGCCTTGTGTTTGATGCTCAGTACAACGTGCACGGCCACGGCACCACGGA
CACGGCCTACTGGGTGGGCCGGCAGGAGAACGAAGAGATCAAGCCCATCC
CTTGCTTTCTATCCAACAGATACGAGCCCTACGTGGTCCTTCGGCGCTGT
CCTACCACGCCTCCTTTCGCCGAAGCCTTCACAGGATATGGAAAGAACAA
GATACAACACATTGCCCATTTACGCTTCCGCGGATTTACCTTCTCGGTGC
TTCCACCCGAGGCATTCTTGGTACACTACCCTCACCCGAAGAGTAGAAGC
AAGCAGTCGTGGCTGGAGGGTGGGAAGCAGGAGGCGAGCAGAGGCTGGAG
GGGAAGGATGGATGACCTTTATAGCCGATTTTTGGACTGGGCTTTTAACG
AAAGGGCGGCCAGAGCAGGGTCAATCACGCATTTGTGCCAGCCTCCTGAG
TCAACTGCCCTGAAAGCGTGAGGACTGGAGGTGTTTGTAGAAGCATCTAC
CGGTGAGGGCATCGCGTTGCTTCACCTTGCTTGCATGGAATTTTGGACAT
GTCAATGGCAGCATTTGCATGCATGGAATCGAACTTGTCATATTAAAATC
ATTCAAAATAAAATTATGAGGGGGTAGATGAGAGAATATAGAAAGCAGAC
TACCACTCGATGGGAAATGATAGAGAGGGAGAATAAAAGAAGCTTTTCCC
CTACAATGATTATCGAGGTGCGTGTGCATGAAGATTTAGGGGTCAATAAA
TGTAGGTAGACTACTGGATCTCGTGAACCGCATAAACACCTGTCTGTGAG
CAGTGTGAAAAAGCTCCTTATTCTTCGCGGTCAGAAAGACTCGCGATAAA
GAAAATTTTTATGGACATCAAGCA back to topprotein sequence of rna3293 >rna3293-protein ID=rna3293-protein|Name=rna3293|organism=Nannochloropsis gaditana|type=polypeptide|length=294bp
MKIFSFALAGITCSAAVAQTLRGLAAWAGEEIGVNTASRDAFTSLEDPMR
VAANTVRAEHGLEPLASDLSLSRTALDLARELGTQDNKEAMLSPEVESKL
LERARANGFTGTSVKANIFTIDAKAENLTATDTEAHALAAVASWAGGKNA
TAGLDVNEHEHAATAGLKVDGHEDVSDHSDEGGVKEVKGAAAGLEVGEHA
EDTEEDTEEDEEDEEDEKDDSDSDSDSDSDSDSDSDDDDDDDDDDDDDDD
DDDDDDDEKDATAALLGDFNVVGSAGVIAPSGQAYITQLYGVSP back to topmRNA from alignment at CM002461.1:27245..29099- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3293 ID=rna3293|Name=rna3293|organism=Nannochloropsis gaditana|type=mRNA|length=1855bp|location=Sequence derived from alignment at CM002461.1:27245..29099- (Nannochloropsis gaditana)
TCTCTTCCTTAAAGCCCCGGTGATCCTTCTTCATCCGGGTCTTTTTTAAA
AGTGAGTAATGGTGTGCAAATATGAGGCAAATCTGCCGGTATGGAGTTTT
TAGGTTTCTTGTATCTTGGGGCAAAAAAGACGGGTTGCAGTTGATCGCAC
GTCGACTTCCGTGAAGATACTAACGAGCATAGCAGCCTTTCTTCTCGGCG
CCACCATGACCTTCCCGGTTATCTCTCACCCGTTCCGTTTCAAATTCTGA
CACATCCAGCAAATAAAGGCATCATGAAGATCTTTTCTTTTGCGCTTGCG
GGCATCACATGTTCTGCGGCGGTTGCTCAGGTAAGTAGCTGGCAATTGAC
GGCAACAGGAAGATTCCAGAAAGAGCCGCGCATCCCCTTAAAAGATCCAC
GAATGGCATGTCTCAAATTCATTTATCCTGCTAACTTCAAACGAATCATA
AACAGACGTTGCGTGGTCTAGCAGCTTGGGCTGGTGAAGAGATAGGCGTC
AACACAGCATGTAAGAAGAGCATGAATCTGGGAAAACCCTGTATTCCTGC
GGCAAAGGCAATGTGTGCCAATTCCGATAACACCGCTTCCTACTCCAACC
AAGCTAAGTCGCTCACTGTATTTCTGTGCATTTTATCCTTGCTAGCAGCC
AGAGATGCCTTCACGAGCCTGGAGGACCCTATGCGCGTGGCGGCCAATAC
CGTTCGAGCCGAGCACGGACTCGAACCTCTCGCGTCCGACCTGAGCCTCT
CACGCACCGCTCTGGACTTGGCGAGGGAGCTGGGTACGCAGGATAATAAA
GAAGCAATGTTGAGTCCGGAGGTGGAGAGCAAGTTATTGGAACGTGCTCG
GGCGAACGGATTCACGGTAGGCGACCGGAGTGGAATGTGGCGTAGTACTG
GGGGAGGTATCTCGCTACAAATGGGGAGTCCTTCGGACACCGTTACAGAC
CATTTATTTTCCAATACCATCTCACGTGTGCTACAGGGTACATCCGTGAA
AGCAAATATCTTCACCATTGATGCCAAGGCGGAGAACCTAACGGCCACAG
ACACAGAGGCTCATGCACTCGCCGCAGTGGCTTCCTGGGCTGGTGGGAAG
AACGCGACAGCAGGACTGGATGTAAACGAGCACGAGCACGCCGCTACTGC
AGGGTTGAAAGTGGATGGACACGAAGATGTCAGTGATCATAGTGATGAAG
GAGGCGTGAAAGAGGTCAAGGGCGCCGCGGCTGGATTGGAAGTGGGGGAG
CACGCGGAGGACACCGAGGAGGACACTGAAGAGGACGAGGAGGATGAGGA
GGATGAAAAGGATGACAGTGACAGTGACAGTGACAGTGACAGTGACAGTG
ACAGTGATAGTGACGACGATGACGACGATGACGACGATGACGACGATGAT
GACGATGACGACGACGATGATGATGACGAGAAGGACGCGACAGCTGCCCT
TCTGGGAGACTTCAACGTTGTTGGCAGTGCAGGCGTCATTGCTCCATCGG
GCCAGGCCTACATTACGCAGCTGTACGGTGTTTCTCCGTAGAAGCTGGGA
AAGGCCGTTTCTTAGAACATGATCGAAGTATATGTGCGGTCACCGCTACT
ATCTGATGAATATTCTATCGTAAAAGCGCTACGATGCAGGCGTCAGCAAT
GAGTGGGCAAGGGCTTGCAGATTTGCTTGGACGGCATAAGGCAGGTCACT
TACTTTATTCTTGGAGGTGATAAATCATGCTATATATAATGTATGTGAAG
AAAGGCAGGGCACCGCGTGTCGTTGGACTGAAACGAATAAATGTTGGTTA
TTAAGCTCGTTAATTCTTTGCAGATAGCCTTCTTGGCCTTTTTAATTCCA
GCCCC back to topCoding sequence (CDS) from alignment at CM002461.1:27245..29099- >rna3293 ID=rna3293|Name=rna3293|organism=Nannochloropsis gaditana|type=CDS|length=3540bp|location=Sequence derived from alignment at CM002461.1:27245..29099- (Nannochloropsis gaditana)
GGTACATCCGTGAAAGCAAATATCTTCACCATTGATGCCAAGGCGGAGAA
CCTAACGGCCACAGACACAGAGGCTCATGCACTCGCCGCAGTGGCTTCCT
GGGCTGGTGGGAAGAACGCGACAGCAGGACTGGATGTAAACGAGCACGAG
CACGCCGCTACTGCAGGGTTGAAAGTGGATGGACACGAAGATGTCAGTGA
TCATAGTGATGAAGGAGGCGTGAAAGAGGTCAAGGGCGCCGCGGCTGGAT
TGGAAGTGGGGGAGCACGCGGAGGACACCGAGGAGGACACTGAAGAGGAC
GAGGAGGATGAGGAGGATGAAAAGGATGACAGTGACAGTGACAGTGACAG
TGACAGTGACAGTGACAGTGATAGTGACGACGATGACGACGATGACGACG
ATGACGACGATGATGACGATGACGACGACGATGATGATGACGAGAAGGAC
GCGACAGCTGCCCTTCTGGGAGACTTCAACGTTGTTGGCAGTGCAGGCGT
CATTGCTCCATCGGGCCAGGCCTACATTACGCAGCTGTACGGTGTTTCTC
CGTAGCCAGAGATGCCTTCACGAGCCTGGAGGACCCTATGCGCGTGGCGG
CCAATACCGTTCGAGCCGAGCACGGACTCGAACCTCTCGCGTCCGACCTG
AGCCTCTCACGCACCGCTCTGGACTTGGCGAGGGAGCTGGGTACGCAGGA
TAATAAAGAAGCAATGTTGAGTCCGGAGGTGGAGAGCAAGTTATTGGAAC
GTGCTCGGGCGAACGGATTCACGACGTTGCGTGGTCTAGCAGCTTGGGCT
GGTGAAGAGATAGGCGTCAACACAGCATATGAAGATCTTTTCTTTTGCGC
TTGCGGGCATCACATGTTCTGCGGCGGTTGCTCAGGGTACATCCGTGAAA
GCAAATATCTTCACCATTGATGCCAAGGCGGAGAACCTAACGGCCACAGA
CACAGAGGCTCATGCACTCGCCGCAGTGGCTTCCTGGGCTGGTGGGAAGA
ACGCGACAGCAGGACTGGATGTAAACGAGCACGAGCACGCCGCTACTGCA
GGGTTGAAAGTGGATGGACACGAAGATGTCAGTGATCATAGTGATGAAGG
AGGCGTGAAAGAGGTCAAGGGCGCCGCGGCTGGATTGGAAGTGGGGGAGC
ACGCGGAGGACACCGAGGAGGACACTGAAGAGGACGAGGAGGATGAGGAG
GATGAAAAGGATGACAGTGACAGTGACAGTGACAGTGACAGTGACAGTGA
CAGTGATAGTGACGACGATGACGACGATGACGACGATGACGACGATGATG
ACGATGACGACGACGATGATGATGACGAGAAGGACGCGACAGCTGCCCTT
CTGGGAGACTTCAACGTTGTTGGCAGTGCAGGCGTCATTGCTCCATCGGG
CCAGGCCTACATTACGCAGCTGTACGGTGTTTCTCCGTAGCCAGAGATGC
CTTCACGAGCCTGGAGGACCCTATGCGCGTGGCGGCCAATACCGTTCGAG
CCGAGCACGGACTCGAACCTCTCGCGTCCGACCTGAGCCTCTCACGCACC
GCTCTGGACTTGGCGAGGGAGCTGGGTACGCAGGATAATAAAGAAGCAAT
GTTGAGTCCGGAGGTGGAGAGCAAGTTATTGGAACGTGCTCGGGCGAACG
GATTCACGACGTTGCGTGGTCTAGCAGCTTGGGCTGGTGAAGAGATAGGC
GTCAACACAGCATATGAAGATCTTTTCTTTTGCGCTTGCGGGCATCACAT
GTTCTGCGGCGGTTGCTCAGGGTACATCCGTGAAAGCAAATATCTTCACC
ATTGATGCCAAGGCGGAGAACCTAACGGCCACAGACACAGAGGCTCATGC
ACTCGCCGCAGTGGCTTCCTGGGCTGGTGGGAAGAACGCGACAGCAGGAC
TGGATGTAAACGAGCACGAGCACGCCGCTACTGCAGGGTTGAAAGTGGAT
GGACACGAAGATGTCAGTGATCATAGTGATGAAGGAGGCGTGAAAGAGGT
CAAGGGCGCCGCGGCTGGATTGGAAGTGGGGGAGCACGCGGAGGACACCG
AGGAGGACACTGAAGAGGACGAGGAGGATGAGGAGGATGAAAAGGATGAC
AGTGACAGTGACAGTGACAGTGACAGTGACAGTGACAGTGATAGTGACGA
CGATGACGACGATGACGACGATGACGACGATGATGACGATGACGACGACG
ATGATGATGACGAGAAGGACGCGACAGCTGCCCTTCTGGGAGACTTCAAC
GTTGTTGGCAGTGCAGGCGTCATTGCTCCATCGGGCCAGGCCTACATTAC
GCAGCTGTACGGTGTTTCTCCGTAGCCAGAGATGCCTTCACGAGCCTGGA
GGACCCTATGCGCGTGGCGGCCAATACCGTTCGAGCCGAGCACGGACTCG
AACCTCTCGCGTCCGACCTGAGCCTCTCACGCACCGCTCTGGACTTGGCG
AGGGAGCTGGGTACGCAGGATAATAAAGAAGCAATGTTGAGTCCGGAGGT
GGAGAGCAAGTTATTGGAACGTGCTCGGGCGAACGGATTCACGACGTTGC
GTGGTCTAGCAGCTTGGGCTGGTGAAGAGATAGGCGTCAACACAGCATAT
GAAGATCTTTTCTTTTGCGCTTGCGGGCATCACATGTTCTGCGGCGGTTG
CTCAGGGTACATCCGTGAAAGCAAATATCTTCACCATTGATGCCAAGGCG
GAGAACCTAACGGCCACAGACACAGAGGCTCATGCACTCGCCGCAGTGGC
TTCCTGGGCTGGTGGGAAGAACGCGACAGCAGGACTGGATGTAAACGAGC
ACGAGCACGCCGCTACTGCAGGGTTGAAAGTGGATGGACACGAAGATGTC
AGTGATCATAGTGATGAAGGAGGCGTGAAAGAGGTCAAGGGCGCCGCGGC
TGGATTGGAAGTGGGGGAGCACGCGGAGGACACCGAGGAGGACACTGAAG
AGGACGAGGAGGATGAGGAGGATGAAAAGGATGACAGTGACAGTGACAGT
GACAGTGACAGTGACAGTGACAGTGATAGTGACGACGATGACGACGATGA
CGACGATGACGACGATGATGACGATGACGACGACGATGATGATGACGAGA
AGGACGCGACAGCTGCCCTTCTGGGAGACTTCAACGTTGTTGGCAGTGCA
GGCGTCATTGCTCCATCGGGCCAGGCCTACATTACGCAGCTGTACGGTGT
TTCTCCGTAGCCAGAGATGCCTTCACGAGCCTGGAGGACCCTATGCGCGT
GGCGGCCAATACCGTTCGAGCCGAGCACGGACTCGAACCTCTCGCGTCCG
ACCTGAGCCTCTCACGCACCGCTCTGGACTTGGCGAGGGAGCTGGGTACG
CAGGATAATAAAGAAGCAATGTTGAGTCCGGAGGTGGAGAGCAAGTTATT
GGAACGTGCTCGGGCGAACGGATTCACGACGTTGCGTGGTCTAGCAGCTT
GGGCTGGTGAAGAGATAGGCGTCAACACAGCATATGAAGATCTTTTCTTT
TGCGCTTGCGGGCATCACATGTTCTGCGGCGGTTGCTCAG back to top
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