rna3291, rna3291 (mRNA) Nannochloropsis gaditana

Overview
Namerna3291
Unique Namerna3291
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1051
Alignment locationCM002461.1:21273..23746 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100185g5.8941.mrna
Orig protein idgnl|cribi|Naga_100185g5.8941
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:21273..23746 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100185g5gene3169Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27387.1cds3282Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3291rna3291-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3291 ID=rna3291|Name=rna3291|organism=Nannochloropsis gaditana|type=mRNA|length=1051bp
TAGACTACTCTTACTTGTCTATACAGACTATATGTTGTGCGCTGACTCAA
TTCAACTTCAACCATGTCTGCCGCTATCAGAGCATATGGTTTGCCAGCGC
ATTACCTGTGTTTGCCATCATCTTGCATAATAGCGACGAAAAAGCATACA
GCAAACCTTTCACTGCACATTTTAGCTTATTTTGGACTTCTGACTCTCGC
TGGATATCTTTCGAGTGAACTACTTGGCCGAGAGACCCAAAAATTACCTG
GAGATGCAACTGTCTCTCAACCTCAGACTGCGCAGATGCATCCCTTTTTC
TCCATCCTTGTGCCTATGACGCTATTTCCTGGGACTTCGACGACATTTTA
TGTCCTTCAAAGTCTGAAAACAGTTGGAGTGATGGTTCCTGGGCTAGATT
TGCTAACAATACGTCCTTTGGGTGACATTTGTCCAAGCGCTTATGCAATA
GGAAAATGGATTACTTTTCTATTTCGAATATCTGAAAAGTTAGCCTATTT
ATTGATCCTTCTGTCAGCTTGTGGAATACTTGCTATAGAATTGAGAATTT
TACTTGGCAAGCAAATGACGGACCTGACCTCTCCTGATATATCGAGGTTG
TGGTGGCCTTCTGAATTTACAGCCCTCCGTGTTTTCCTGGGGGCGAGCTC
CTGTCTTTTGGGCATCTCGATCCCTTTTCTAGTTCTCTACCATTTTCCCT
TCCAACTCGCTCACGACCTGGAACAGAATCCGAATTCTGATCCATTGCTG
AAAACCCTTTTTGCGGAGCATACAGTATATCGCTTCGTCCACTGGGAAGG
AGCGGGCATTGATGACCCAAGTCTCGTCACCATCCTCCGCGCTGAGACGT
CTGTGGTGCTTGTCGTAGCTCTCAGCCTCTGCTGGGTGGGCTTAGGAAGC
AAGATTATGCTTCCAATACCGCTGACTAAGCGGCATTCTTCTCACCACCA
CGGAAACAAGAATTCGATGTTTTTAACGACTGTTGTATAATATAACGCAT
ATTGCGCAAGCCAAAGAGAAATCACGCCAAGGCGCTCCCAAGTTTTTACT
C
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protein sequence of rna3291

>rna3291-protein ID=rna3291-protein|Name=rna3291|organism=Nannochloropsis gaditana|type=polypeptide|length=424bp
MQILDALSSACGPRSQQEALVLACHAAFLLHGTPRLVPLSSTSRSAPLSF
SLLDAFHEASAGYFPTQYFAVCKEGTKDSDNQDMDYISIKPIRCRGRSHD
HGGSEGSDSRHLQTGPVLVLFGYRGKLHGSAVHRLELSVGEYIVQEPDFL
RITEREASGRPLEKIGTGDKNYMNTSENICLITGEQGNSDGASAPKYACR
FQALVSHIAVRFFSKLVPELYTVRSLPAFTEVIGRRGGRGNGCLTQMCSS
STPSLLVDELLPFLDCQSMLHLAATAWQFHRPLTLTQQAWIILLERDFPL
ADSSSFLRPATSRSSEAGPHLSAKSARDAYRRQFQARFPPKMLRHEGLQE
HWVGHRWYLPPFPGEFHTAPIFSPVRYFSEDFEEVRRGRREALRYPFEES
PLTWLERRPERREEGLFEGNFCWR
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mRNA from alignment at CM002461.1:21273..23746-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3291 ID=rna3291|Name=rna3291|organism=Nannochloropsis gaditana|type=mRNA|length=2474bp|location=Sequence derived from alignment at CM002461.1:21273..23746- (Nannochloropsis gaditana)
AGGTATAAACATTCAGAGTAGCAGAGATGTATATCATCTTGGAGTACAAT
GGCACCAACAGCGTCAAAAATCAAACGTAGGTCCATCCGCGTGCATGCCT
CGGCCAGTATGGCATCTATGTACGTCAAAACCCGATGACGACCGCTCGCG
GGCGTTCTCGCAAAATGCCAACACTTCTACGCTCCCTTTGGCTCTAGTAC
GGACAAAACGACAGACATTGTAGCAGGGAGTATACGGAGTCACAAAGATA
TTTTATTGCAACCACATAAGTCAAGCTTGCGTATCAGAGATGCTGCAATG
ACTCAATGTGACAGACAATTGTGGGCAATGAGAAGGAGCAACCCTTCAAG
CAAGTAAGAAGCTAATTGCCTTCACCCGTCCTCCAACACCTAAGACAGAG
ACCCTGTACAGCACATAACGCAACTCATGCAAATTCTAGATGCTCTTTCC
AGTGCATGTGGTCCACGAAGTCAGCAAGAGGCTCTGGTTCTCGCGTGCCA
TGCTGCATTCTTGCTGCATGGAACTCCCCGCCTAGTACCCTTGTCGTCCA
CTTCGCGCTCTGCTCCATTGTCTTTCTCTTTACTGGATGCCTTTCATGAA
GCCTCTGCAGGCTACTTCCCGACACAGTATTTCGCCGTATGCAAGGAAGG
TACCAAGGACAGCGATAATCAAGACATGGATTACATTTCCATTAAGCCGA
TAAGGTGCAGGGGGAGGAGCCACGATCACGGAGGGAGCGAGGGATCAGAC
TCGCGGCATCTACAAACTGGTCCCGTGCTTGTCCTTTTCGGTTATCGGGG
GAAGCTGCATGGGTCCGCTGTGCACAGGTTGGAGCTGTCGGTGGGAGAGT
ACATCGTTCAAGAGCCCGACTTCCTCCGTATCACTGAGCGGGAGGCTTCA
GGAAGACCCTTAGAGAAAATTGGGACAGGGGATAAAAATTACATGAACAC
AAGTGAGAACATTTGTCTCATAACAGGTGAACAGGGCAACAGTGACGGTG
CAAGCGCCCCTAAGTATGCCTGTCGCTTCCAGGCTTTAGTCTCGCATATC
GCTGTTCGATTTTTCTCCAAGTTGGTTCCTGAACTTTACACCGTAAGATC
GCTCCCTGCCTTCACAGAAGTCATTGGAAGACGCGGTGGGCGCGGTAATG
GGTGCCTTACACAAATGTGTTCATCGTCGACTCCCTCATTGCTGGTGGAT
GAGCTCCTTCCTTTCCTCGACTGCCAGAGTATGCTCCATCTCGCGGCAAC
GGCATGGCAGTTTCACCGGCCTTTGACGCTGACACAGCAAGCATGGATCA
TTCTCCTGGAACGAGACTTCCCTCTTGCCGATTCCTCTTCCTTTTTGCGT
CCTGCCACTTCCCGCTCCTCCGAAGCAGGACCGCATCTGTCTGCAAAAAG
TGCGCGCGACGCCTATCGTCGCCAGTTTCAGGCCCGATTTCCACCCAAGA
TGCTTCGACACGAGGGTCTGCAGGAGCATTGGGTTGGCCATCGGTGGTAT
TTACCACCTTTTCCAGGCGAGTTCCATACCGCCCCCATTTTTTCTCCCGT
CCGTTATTTTTCGGAGGACTTCGAGGAAGTGAGAAGAGGAAGGAGGGAAG
CGTTACGGTATCCATTCGAAGAGTCGCCGCTAACGTGGCTTGAGAGGAGG
CCAGAACGAAGGGAAGAAGGCCTTTTTGAAGGGAACTTTTGTTGGAGATG
AAGAAAGAGGGAAATGACATAGTGAAAGCAAAAGAAAGTTCTTCAAGATA
GGCAAGGTAGAAAAACACTAGGGTGTACCGTGTATATAATCATATGCAAT
AAAAGTATGCAGCTAAGAATAGCAAGATAGAATCTGAGTAAAAACTTGGG
AGCGCCTTGGCGTGATTTCTCTTTGGCTTGCGCAATATGCGTTATATTAT
ACAACAGTCGTTAAAAACATCGAATTCTTGTTTCCGTGGTGGTGAGAAGA
ATGCCGCTTAGTCAGCGGTATTGGAAGCATAATCTTGCTTCCTAAGCCCA
CCCAGCAGAGGCTGAGAGCTACGACAAGCACCACAGACGTCTCAGCGCTG
GAGAAATTATGTCATAAAGGAATGCGTGATAATCTTTTTTCCAAAATACG
TGTGGTTGTTCGTGTGAAGTTATCTAAGTATAAAGTACGACCAAACATAC
GTCATGTGACTTATTTAACTGATCAGTGCAGCTTTAAGTGAGCGCAATTC
AAGAAATGTAGTAGACCCGTGAATATTCATGCAAACTAATTCCCTCTTAC
CGGAGGATGGTGACGAGACTTGGGTCATCAATGCCCGCTCCTTCCCAGTG
GACGAAGCGATATACTGTATGCTCCGCAAAAAGGGTTTTCAGCAATGGAT
CAGAATTCGGATTCTGTTCCAGGTCGTGAGCGAGTTGGAAGGGAAAATGG
TAGAGAACTAGAAAAGGGATCGAGATGCTGTACAAGGTAATATAGGGACA
GAATTGAGTTTAGATCGCTTAATG
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Coding sequence (CDS) from alignment at CM002461.1:21273..23746-

>rna3291 ID=rna3291|Name=rna3291|organism=Nannochloropsis gaditana|type=CDS|length=1275bp|location=Sequence derived from alignment at CM002461.1:21273..23746- (Nannochloropsis gaditana)
ATGCAAATTCTAGATGCTCTTTCCAGTGCATGTGGTCCACGAAGTCAGCA
AGAGGCTCTGGTTCTCGCGTGCCATGCTGCATTCTTGCTGCATGGAACTC
CCCGCCTAGTACCCTTGTCGTCCACTTCGCGCTCTGCTCCATTGTCTTTC
TCTTTACTGGATGCCTTTCATGAAGCCTCTGCAGGCTACTTCCCGACACA
GTATTTCGCCGTATGCAAGGAAGGTACCAAGGACAGCGATAATCAAGACA
TGGATTACATTTCCATTAAGCCGATAAGGTGCAGGGGGAGGAGCCACGAT
CACGGAGGGAGCGAGGGATCAGACTCGCGGCATCTACAAACTGGTCCCGT
GCTTGTCCTTTTCGGTTATCGGGGGAAGCTGCATGGGTCCGCTGTGCACA
GGTTGGAGCTGTCGGTGGGAGAGTACATCGTTCAAGAGCCCGACTTCCTC
CGTATCACTGAGCGGGAGGCTTCAGGAAGACCCTTAGAGAAAATTGGGAC
AGGGGATAAAAATTACATGAACACAAGTGAGAACATTTGTCTCATAACAG
GTGAACAGGGCAACAGTGACGGTGCAAGCGCCCCTAAGTATGCCTGTCGC
TTCCAGGCTTTAGTCTCGCATATCGCTGTTCGATTTTTCTCCAAGTTGGT
TCCTGAACTTTACACCGTAAGATCGCTCCCTGCCTTCACAGAAGTCATTG
GAAGACGCGGTGGGCGCGGTAATGGGTGCCTTACACAAATGTGTTCATCG
TCGACTCCCTCATTGCTGGTGGATGAGCTCCTTCCTTTCCTCGACTGCCA
GAGTATGCTCCATCTCGCGGCAACGGCATGGCAGTTTCACCGGCCTTTGA
CGCTGACACAGCAAGCATGGATCATTCTCCTGGAACGAGACTTCCCTCTT
GCCGATTCCTCTTCCTTTTTGCGTCCTGCCACTTCCCGCTCCTCCGAAGC
AGGACCGCATCTGTCTGCAAAAAGTGCGCGCGACGCCTATCGTCGCCAGT
TTCAGGCCCGATTTCCACCCAAGATGCTTCGACACGAGGGTCTGCAGGAG
CATTGGGTTGGCCATCGGTGGTATTTACCACCTTTTCCAGGCGAGTTCCA
TACCGCCCCCATTTTTTCTCCCGTCCGTTATTTTTCGGAGGACTTCGAGG
AAGTGAGAAGAGGAAGGAGGGAAGCGTTACGGTATCCATTCGAAGAGTCG
CCGCTAACGTGGCTTGAGAGGAGGCCAGAACGAAGGGAAGAAGGCCTTTT
TGAAGGGAACTTTTGTTGGAGATGA
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Synonyms
Publications