rna329, rna329 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna329
Unique Name	rna329
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1281
Alignment location	CM002455.1:814691..817278 -

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Properties


Property Name	Value
Product	arogenate dehydrogenase
Orig transcript id	gnl\|cribi\|Naga_100003g167.1725.mrna
Orig protein id	gnl\|cribi\|Naga_100003g167.1725
Gene	CM-PDT-PDH
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:814691..817278 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
CM-PDT-PDH	gene318	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30208.1	cds329	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna329	rna329-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:814691..817278-
coding sequence from alignment at CM002455.1:814691..817278-

mRNA sequence

>rna329 ID=rna329|Name=rna329|organism=Nannochloropsis gaditana|type=mRNA|length=1281bp
ATGGCCCCCAATGTGGGCGCCTCGCCATGGCAAAAAGGTGGCTCGGCGCT
CATGTACGGGATGGCTTCCCTTTCCATTATGGTTGTGAATAAGATCGTGT
TGACTTCATATCAATTCCCATCTTTCGCGTTTCTGGCTGCCTCCCAATTT
TTGTTCACCACAATGATCATTTTCATTCTTGATCGCGTCGGACGCTTGCA
AGTCACGGCCATGTCGTGGGAGGTCGTCCGAGTGATGGCGCCTCTCGTTG
TCATTTCGCTTGTGAACGTGCTTGCAGGCCTTGGAGGCACGCAGAAGGTC
TCCCTGCCCATGTTTACAGCCTTGCGGCGATTTTCCATCCTCATGACCAT
GCTCCTGGAAGCCTACGTCTTCGGCACCAGTCCCTCCACTGCCGTAAAAA
TGAGCGTTTTCATGATGATCATTGGGGCTCTAGTCGCGGCCATGTCTGAC
TTAAGCTTCGACACGGTGGGCTATGCGATGATATTGCTTTCAGATCTATT
CACAGCATTGAATGGCGTGGTAATGAAGAAAACACTAAGCTCCTCCTCCA
CGGTAAACAAAATGGCGGTACTCTATTACAATAGCCTCTTCGGGGTCGTC
ATGATGGGTCTGCTGATGACGCTGCGGGATGAGGAACTGGCGAGAGTCCG
GGAATTCAGGCACTGGCAGGATCCACATTTTGTCCTCTACTTCTTCCTCG
CTGGGGCCATGGGCTCTGTCCTCAATTACTCTATCTTCCTGTGCACGCTT
TATAACAGTGCACTCACGACTACGGTTGTAGGCTGCCTCAAGAACATTTT
GACCACCTACATCGGCATGTTTCTCATCAGCGACTACATCTTCTCCTGGG
AGAATTTCCTGGGAATTCATATTTCCATCGCCGGCTCCCTCGTCTATTCC
TATGTTGAGCTCCAATCGATTCTTAACAACAAAGAGCGGCCGGGCACGGA
TCTGACCTCCCGAAAGAAGCTAGGACGGATCCACCACCCTGGCAAGTTGG
CTGATCGCAGCAGCAAGCGGGAAGCTGAGATGATCCGAGAAGGTAATGCT
GGTTTAGCCGCTCAAATCCTGGCAGGCATACGGCACCAGCTGGGCCTGCC
TCTGGCGCACGTAACTTACAACCCAAAGTATAAAATCCTGTCATCTCCTG
ACCTTCCAACGGGCCTTAATGTAAATCGCCGTACATGTCAGGCAATACGA
AAGAGACAACCGACACAAAATCATATCTTACTCCCAAAAGAAGACACTCA
ATGTGAAACAAGAGCTAGTCATTCATTTTAA

protein sequence of rna329

>rna329-protein ID=rna329-protein|Name=rna329|organism=Nannochloropsis gaditana|type=polypeptide|length=785bp
MCNAHPSTGAVAGLRAALSVRSMGTLPLVSKAPSRKSFTLSLRSSFILIV
LALITLVGVQAFTLRAPAVAYPIRVAFQGEPGAYSEKALRELLGPHVLAT
GKPSFEDTFKSVATREADYAVVPIENSLGGSIHANYDLLLRHELHIIGEH
EFRVEHSLLALPGVKKEDIRRVMSHPQALAQCDAYLRNWGVARESMYDTA
GSAKVIAEQGLRDCAAIASELAGATYGLDVLDQNIEDDDSNFTRFLLLSR
QSISSLIPHSVPAKTSIVFITPNTPGALYKALACFTLRDIDFCKIESRPT
SPQLFRFLQFQQRQMRSFASGGADAAMGSGDDHDLPRFRYCFYLDFLASQ
LDEPARNALLQLEEQSQYVRVLGSFPTKGQLLGPIREALDLLAKESGEAA
GVPLKAVASRRAQDPSAKTPDRLKIGVVGFGKFGQFLTKTFTKYHDVSVV
SRDDMTSVAADLGVPFFPLYDATEFFRQDLDVVVLSVSILAFEEVLTSLP
AEALRGKLLVDVLSVKVHPKTVMLESLPGDVDIICAHPMFGPESGKFGWQ
GLPFVYERVRIQDFARAERFLSIFEVERCKMIEMSCDTHDKYAADSQFIT
HLTGRILGQQGLQPTPIDTRGFQSVLKLVDNTCRDSFDLFYGLFKYNKHS
SDQIQRLREAFANVERQLAAKEAYLAARTEIMQDERKKLFAECRSLIREA
VAQSTNLPSSSSNIHLSSSPSAGPPPASASPSDAADPKPEEASSITPPPP
SAAQSQENKGNSTSGKGRPSSRLSPVVKPTAPPKL

mRNA from alignment at CM002455.1:814691..817278-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna329 ID=rna329|Name=rna329|organism=Nannochloropsis gaditana|type=mRNA|length=2588bp|location=Sequence derived from alignment at CM002455.1:814691..817278- (Nannochloropsis gaditana)
ACTCCCAATGCCACATGTTCGTGACGATAGCGGCGGTGCATAAGCGTTCA
AAGTCTTTGTGAGGTAGAGCGAGCACACTTATGTGTAATGCACATCCAAG
CACAGGTGCAGTGGCCGGGTTGAGAGCCGCTCTATCGGTACGCTCCATGG
GCACCCTCCCGCTCGTGTCCAAGGCCCCGTCTCGCAAGTCTTTCACGCTG
TCACTGAGGTCGTCGTTCATATTGATCGTGCTTGCGCTCATTACGCTCGT
CGGTGTGCAGGCTTTTACATTGCGCGCTCCGGCCGTGGCATACCCCATCC
GGGTGGCTTTCCAGGGCGAACCCGGCGCCTACTCGGAGAAAGCCTTGCGC
GAGCTCCTCGGACCGCACGTTTTGGCCACCGGCAAGCCATCTTTTGAGGA
CACGTTTAAGTCTGTCGCCACTCGGGAGGCTGATTATGCGGTCGTGCCGA
TTGAAAACTCTCTAGGGGGCTCCATACATGCCAATTACGATCTCCTCCTT
CGGCACGAGCTCCATATTATAGGCGAGCACGAATTCCGCGTGGAGCACTC
GCTTCTGGCGCTGCCGGGTGTTAAAAAGGAGGACATCAGGCGCGTTATGA
GCCATCCGCAGGCGCTAGCACAATGTGACGCCTACCTTCGTAATTGGGGC
GTGGCTCGGGAGTCCATGTATGATACTGCGGGCTCTGCCAAGGTCATAGC
CGAGCAAGGCTTGCGTGACTGCGCCGCCATTGCGTCAGAGCTAGCAGGCG
CCACCTATGGCCTTGATGTGCTTGACCAAAATATCGAGGACGACGACAGC
AATTTCACCCGCTTCCTGCTTCTCTCTCGGCAGTCCATCTCCTCCCTCAT
CCCTCACAGCGTGCCCGCCAAAACCTCCATCGTCTTCATCACCCCTAACA
CCCCCGGCGCTCTCTACAAAGCCCTGGCCTGCTTCACGCTCCGAGACATC
GATTTTTGTAAGATTGAGTCACGACCGACGTCCCCTCAACTCTTCCGCTT
TCTCCAGTTCCAACAGCGACAAATGAGAAGCTTCGCATCCGGGGGCGCGG
ACGCGGCCATGGGCTCGGGCGACGACCACGATTTGCCGCGTTTTCGTTAC
TGCTTTTACTTGGACTTCTTGGCCTCACAACTCGATGAGCCTGCGCGTAA
TGCCTTGCTGCAGCTTGAGGAGCAGTCTCAGTACGTGCGAGTGCTCGGCT
CGTTCCCGACGAAGGGCCAGCTCCTGGGCCCCATTCGGGAGGCGCTGGAC
CTGCTAGCCAAGGAGAGCGGGGAGGCAGCGGGCGTGCCCTTGAAGGCTGT
CGCGTCAAGGAGGGCGCAGGATCCTTCTGCAAAGACTCCTGACCGTCTCA
AGATCGGTGTTGTGGGCTTCGGAAAATTTGGTCAGTTTCTGACCAAGACT
TTTACCAAGTATCACGACGTGAGCGTAGTGAGCCGCGATGACATGACCTC
GGTTGCCGCCGACTTGGGCGTGCCATTCTTCCCCCTCTACGACGCGACGG
AATTCTTTCGGCAGGACCTGGACGTGGTCGTCCTCTCTGTCTCGATCCTG
GCCTTCGAGGAGGTGCTGACAAGCCTGCCCGCCGAGGCCCTCCGGGGCAA
ATTATTGGTCGACGTTCTGTCGGTAAAGGTGCACCCGAAGACGGTCATGC
TCGAGTCGCTCCCCGGGGACGTCGACATTATCTGTGCGCACCCCATGTTC
GGGCCGGAGTCGGGAAAATTTGGTTGGCAGGGTCTCCCTTTCGTCTACGA
GCGGGTCCGCATCCAGGACTTCGCCCGTGCCGAGCGCTTCCTGTCCATCT
TTGAGGTGGAGAGATGTAAGATGATCGAAATGAGCTGCGACACCCATGAC
AAGTATGCTGCTGACTCCCAATTTATCACGCACTTGACGGGTCGCATCCT
CGGTCAGCAAGGCTTGCAGCCCACCCCTATCGACACGCGTGGCTTCCAGA
GCGTCCTCAAGCTGGTCGACAATACTTGCCGCGACAGTTTCGACCTCTTC
TATGGTCTCTTCAAGTACAACAAGCATAGCTCCGACCAGATTCAGCGTCT
TCGCGAAGCATTTGCAAACGTAGAGCGCCAACTTGCCGCCAAAGAGGCCT
ATTTGGCTGCCCGCACCGAAATTATGCAGGACGAGCGAAAAAAGCTGTTC
GCGGAATGTCGCAGCCTCATCCGGGAGGCAGTAGCCCAGTCGACGAACCT
GCCCTCGTCATCCTCGAATATTCACCTGTCCTCTTCCCCCTCTGCCGGAC
CCCCACCTGCTTCGGCCTCCCCCTCGGACGCTGCGGATCCCAAGCCAGAA
GAGGCCTCCTCTATTACCCCTCCACCCCCCTCGGCGGCACAGTCACAAGA
AAACAAAGGCAACAGCACATCGGGCAAAGGCCGGCCATCGTCCCGCCTTT
CCCCCGTAGTGAAACCCACAGCGCCCCCCAAGCTATAGCGCCTCTGAGGC
AAAAATAAGATGGCTGTGTCGACCGAAAGGAGTCACCAGGACGGAGAAAT
TGCCATGGATAACAGGACAGTTGTATCACACGAGAGGGCACAAAGTAAAG
CGGACACCCTTAAAATGAATGACTAGCTCTTGTTTCAC

Coding sequence (CDS) from alignment at CM002455.1:814691..817278-

>rna329 ID=rna329|Name=rna329|organism=Nannochloropsis gaditana|type=CDS|length=2358bp|location=Sequence derived from alignment at CM002455.1:814691..817278- (Nannochloropsis gaditana)
ATGTGTAATGCACATCCAAGCACAGGTGCAGTGGCCGGGTTGAGAGCCGC
TCTATCGGTACGCTCCATGGGCACCCTCCCGCTCGTGTCCAAGGCCCCGT
CTCGCAAGTCTTTCACGCTGTCACTGAGGTCGTCGTTCATATTGATCGTG
CTTGCGCTCATTACGCTCGTCGGTGTGCAGGCTTTTACATTGCGCGCTCC
GGCCGTGGCATACCCCATCCGGGTGGCTTTCCAGGGCGAACCCGGCGCCT
ACTCGGAGAAAGCCTTGCGCGAGCTCCTCGGACCGCACGTTTTGGCCACC
GGCAAGCCATCTTTTGAGGACACGTTTAAGTCTGTCGCCACTCGGGAGGC
TGATTATGCGGTCGTGCCGATTGAAAACTCTCTAGGGGGCTCCATACATG
CCAATTACGATCTCCTCCTTCGGCACGAGCTCCATATTATAGGCGAGCAC
GAATTCCGCGTGGAGCACTCGCTTCTGGCGCTGCCGGGTGTTAAAAAGGA
GGACATCAGGCGCGTTATGAGCCATCCGCAGGCGCTAGCACAATGTGACG
CCTACCTTCGTAATTGGGGCGTGGCTCGGGAGTCCATGTATGATACTGCG
GGCTCTGCCAAGGTCATAGCCGAGCAAGGCTTGCGTGACTGCGCCGCCAT
TGCGTCAGAGCTAGCAGGCGCCACCTATGGCCTTGATGTGCTTGACCAAA
ATATCGAGGACGACGACAGCAATTTCACCCGCTTCCTGCTTCTCTCTCGG
CAGTCCATCTCCTCCCTCATCCCTCACAGCGTGCCCGCCAAAACCTCCAT
CGTCTTCATCACCCCTAACACCCCCGGCGCTCTCTACAAAGCCCTGGCCT
GCTTCACGCTCCGAGACATCGATTTTTGTAAGATTGAGTCACGACCGACG
TCCCCTCAACTCTTCCGCTTTCTCCAGTTCCAACAGCGACAAATGAGAAG
CTTCGCATCCGGGGGCGCGGACGCGGCCATGGGCTCGGGCGACGACCACG
ATTTGCCGCGTTTTCGTTACTGCTTTTACTTGGACTTCTTGGCCTCACAA
CTCGATGAGCCTGCGCGTAATGCCTTGCTGCAGCTTGAGGAGCAGTCTCA
GTACGTGCGAGTGCTCGGCTCGTTCCCGACGAAGGGCCAGCTCCTGGGCC
CCATTCGGGAGGCGCTGGACCTGCTAGCCAAGGAGAGCGGGGAGGCAGCG
GGCGTGCCCTTGAAGGCTGTCGCGTCAAGGAGGGCGCAGGATCCTTCTGC
AAAGACTCCTGACCGTCTCAAGATCGGTGTTGTGGGCTTCGGAAAATTTG
GTCAGTTTCTGACCAAGACTTTTACCAAGTATCACGACGTGAGCGTAGTG
AGCCGCGATGACATGACCTCGGTTGCCGCCGACTTGGGCGTGCCATTCTT
CCCCCTCTACGACGCGACGGAATTCTTTCGGCAGGACCTGGACGTGGTCG
TCCTCTCTGTCTCGATCCTGGCCTTCGAGGAGGTGCTGACAAGCCTGCCC
GCCGAGGCCCTCCGGGGCAAATTATTGGTCGACGTTCTGTCGGTAAAGGT
GCACCCGAAGACGGTCATGCTCGAGTCGCTCCCCGGGGACGTCGACATTA
TCTGTGCGCACCCCATGTTCGGGCCGGAGTCGGGAAAATTTGGTTGGCAG
GGTCTCCCTTTCGTCTACGAGCGGGTCCGCATCCAGGACTTCGCCCGTGC
CGAGCGCTTCCTGTCCATCTTTGAGGTGGAGAGATGTAAGATGATCGAAA
TGAGCTGCGACACCCATGACAAGTATGCTGCTGACTCCCAATTTATCACG
CACTTGACGGGTCGCATCCTCGGTCAGCAAGGCTTGCAGCCCACCCCTAT
CGACACGCGTGGCTTCCAGAGCGTCCTCAAGCTGGTCGACAATACTTGCC
GCGACAGTTTCGACCTCTTCTATGGTCTCTTCAAGTACAACAAGCATAGC
TCCGACCAGATTCAGCGTCTTCGCGAAGCATTTGCAAACGTAGAGCGCCA
ACTTGCCGCCAAAGAGGCCTATTTGGCTGCCCGCACCGAAATTATGCAGG
ACGAGCGAAAAAAGCTGTTCGCGGAATGTCGCAGCCTCATCCGGGAGGCA
GTAGCCCAGTCGACGAACCTGCCCTCGTCATCCTCGAATATTCACCTGTC
CTCTTCCCCCTCTGCCGGACCCCCACCTGCTTCGGCCTCCCCCTCGGACG
CTGCGGATCCCAAGCCAGAAGAGGCCTCCTCTATTACCCCTCCACCCCCC
TCGGCGGCACAGTCACAAGAAAACAAAGGCAACAGCACATCGGGCAAAGG
CCGGCCATCGTCCCGCCTTTCCCCCGTAGTGAAACCCACAGCGCCCCCCA
AGCTATAG

Synonyms

Publications