rna3287, rna3287 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3287
Unique Name	rna3287
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2976
Alignment location	CM002461.1:10811..13795 +

Link to JBrowse

Properties


Property Name	Value
Product	flavin-binding kelch repeat f-box
Orig transcript id	gnl\|cribi\|Naga_100185g11.8947.mrna
Orig protein id	gnl\|cribi\|Naga_100185g11.8947
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:10811..13795 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100185g11	gene3165	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3287	rna3287-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27393.1	cds3278	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:10811..13795+
coding sequence from alignment at CM002461.1:10811..13795+

mRNA sequence

>rna3287 ID=rna3287|Name=rna3287|organism=Nannochloropsis gaditana|type=mRNA|length=2976bp
TTACACGTCCGGACATTGCATTTGCAGTGCAATCATTGGGGAAACACTTG
CAAGGATCTAATGAGGAGCATTGGATCGCTGCAAAGCGTGTATTGAGGTA
CCTGAAGGGTACTCGTGATGTTGGAATCAGATATACCGGTAATTCTACGG
GATCGTTTACCCTGGTAGGATTCGCGGACGCAGATTATGCTGGTGATAAA
GATAACAGACGTTCGACGTCTGGTTATACTTTTACGTTGAGTCATGGAGA
TGATGTCAACACGATTGATTGGAAAGCCAAGCAACAAGATGTGGTGGCTC
TATCGTCGGCTGAATCGGAGTTGATATCTGCTTGTTCAGCGACACAAAGT
GCAGTTTATATTCGTCAACTACTTACGGACCTTGGATTTAAGCAAGATGA
ACCTACCGTAATTATGGAGGATAATCAAGCTTGTATTGCAATGAGCAATA
ATCCGATTACGCATAAGAGGACGAAGCATATCGATATTCGATATCACTTT
GTGCGTGAGAAAGCTGAGAGTAAGGAAGTGGAACTGGTATACATTCCTAC
TCAGCATCAACTTGCGGATATTTTAACAAAACCCTTATCTAATATTCGAT
TAGCAATGATACGTAATCGAATGATGGGTTATAAGTCTTAATTGGGATTT
GGAGACAGCTGTGGAATCAGCGCAGATATATTAGAGATGAGAGATATGAT
CCTTATCTTAAGTATGCGAGTTATAGGATTAACTGCTTTGGATCATACAT
AATGATTAGGAGTACGAGTGGGGGTGACGCGAATATAAGGATGACATGAT
GATGCTAAGGGAGCATGAGATCGGCGATAGGAGGTTAAGCGAGCCGAGGA
GGTTAAGCGAGCCATCTTACAGTGTTGCACTTATATCCTGGATGGATCCA
ACAGTCTGTATCACGATGTGCTGTTCGCTACTGTATCATGTCATGGTTTG
CGTCCACCTAATCATTTGTATGTTATATTATTGTACGACAACAGGACTGG
CGTCGACCAGTGTCTTTGGTTGTCGGTCGTATTGGTTATCTTAGTGCGAG
ATTCTTGGGTGAATCGTTGGTCCACATTCTCAGGGAGAATAGTGGTCGTA
CTGAAGAATAAATTGGATATTGGGTTATCCACAGTGGCATTTGTTTGTTT
ATTCGCATCACTCTTAACACTTTGCGACGGCATATGGGGCTTTGGAGCAT
CACTGCATTACTGTTCGCTTTGCCGTGAGGCCATTAGGCAGGTTCAATTG
AAACTCGAGGTTGTCGACTGGATCTTTGCTTTCGAGCGTTACGGTGATGG
AACCTTTGCCCTTCGCTATCAGGATGCCGCGCTTAGCATCGGGCCTTACT
TTGGCCTTTTGGCCTTGAGGGAAAGCCGCGGACATTCTTGATAGACAGTA
GTGAGAATGTTTGCAAAGCCCAGGAGGGCGGGAAGAAAAATGCTGGAGCA
ATTTGTCATACTTAATGTCGTCAATCGATGGTTGGACAGGTGCCTGTAGA
TTTGGTTTCAAGCATCCGACGTGTTGCGTTATGAAATTATACGGAAGCAT
CGGCACAAAACGTACATGAAATTTGGGTGATACAGCTATCTGCAACAGCT
AATTGTAGAGCTTTATTGGTTTGATATCGCATGGCTTGAGCATGACGGGG
ATATCTGCGTCACTTGTAACCATTCATTTTTCACAGGACTGCCAGGGTGT
CGCCAGCAGCGCATCAAGCCACGAATTTTAGGGACCACCAACTACCTCAA
TGGCATACAAGCCAAAACAGTGCAAGCAAGGATAAAAAAGCGATGAAAGT
CCATGAGCATCATCATATGAATTAGTCCGATCATTGGAGGAGAGATATAT
GGGGGATGCTGGTTCCAAGACGGAATAACACCGCACTCAGTATGTTTTTC
ATCGCGTACCTTCTGAAAGGTTGGACAAGTGAAGACCGAGGAGGATTCAA
TGCCACACATTTGTTTGCATTACAATGGGCCATCTTCAGTGATTACAACA
TAATTACTTACGAAGGTGGTGTTTAGTTAACGGCCAAGAGCAAGAGAGTA
CAATAGTCACTCACTCCTGTCCGGCTCGTCAACAATCGTGTAGTGCAAAT
TTTCAAAGCGTCATTGAACTTGAACGCTATCAGCTATACGACCATTAGTG
ACTTGAGCGTCTAAATAAATGGGCGGGGCTTGGTGTTGGACCTGCTATCT
GCGTGCACTATGCTACCTGCGTGACATTCTGGTGGAAAATATGAAATGAC
GTCAATCATGAGGAAGACAGGCATTAGAGATATTCCAAATTCCTGACGTA
GGGCGCGAGGACGTTTTCGGCTTCGGCCATCAGCTACCCATGATCTCGGT
GTCTACCTGCTATCCGTAGAAGAATGTGAATGGGAGGAGCAGATATCCGT
GAAATGTAGGCTAGTACGAATAGAATGTCTGTAGCACTCTTGGTGCACGG
GTGCAAATGTTTCCCTAAAGGGTAAAACATAATTGAAAGAGAAACGTCTG
CACTTCATGGTGGCTTTCTTCACATAATGAGTGTACTGTATGCTATATAA
ACTAATACTAAAGACTAAATTAGTAATCACTAACCTCCAAACTGTCTTAG
TAGACTACGTTCATAAGCCCCATGGAGCCTGCTCAGCATGATGACTGTCA
GTCTCAAGCTATCGCGCCGACCGACATACGTGGTGATCTCTTTGAAGGCC
TACTTTAAGTGTAATTTCTCTATTTTGGGATCTGGAAACAAAAGCTCAAA
TTCTAATTGCCTGGGTGCTCACACTGAGGGCGGAAAGCCGGTGTAGCCGA
CTACATGCATATTCCTTTTGAATGACGTCTACGTCTGGATCTCAAAAATA
CATTATTTAATCACGCTGAAAATGCCGCTCGCTCAAACCATCTATTTTCT
TCATTTTTAAGCCATCTCTTCTCATGACCTGATGACCAACTCTCAATAGC
TTGTCTCAAGTCTAGTTTTAAGCGTC

protein sequence of rna3287

>rna3287-protein ID=rna3287-protein|Name=rna3287|organism=Nannochloropsis gaditana|type=polypeptide|length=520bp
MAPAPACTAHSFSAFSGLGHDLMLYMATFLDGSTLMCLAMGSTTQQSLLL
PPVSSGPFSSSLKKSSGFALWYDLLRHDEIGWKLLRRQKHHEIVSKASNS
ESPTVPHQLYGTMDRLRRLGAASGVAWHPLPRPNARLGAPPAMEGHAACL
LDDRWMVMVGGFTSYGVRNDVFVLDTWAPLSAPHPEWIRFPGPGVHQRQE
PGDVYDHAQAISLPVYGHVCCPLGPRHVAVFGGVTMGGYQGDINDFYLLE
LNFEEVSTHGLESDGLNGKRGGVNASNQGGSGKKGRSDADSSNSSPGTKT
VCRSVRVLRPSDLLGQPLTSRAYATMTLLSRVDSSSPALSAPLRLLILGG
IHQGQAILQPEVLTFLGAVEAEGEMGRRGDAGSWEVTCPRIPGPEPSVRM
GHSCSFLPRLGCVVVVGGSNGSDLLRNGRELLNDVSFILLEEEETQGIGK
RGGGEEDRRRRRTDCSSLCAGKIPSTGGRELPSWNTRHSQAGRTPRISYG
RTRRVDGWSARSSSSGGTRA

mRNA from alignment at CM002461.1:10811..13795+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3287 ID=rna3287|Name=rna3287|organism=Nannochloropsis gaditana|type=mRNA|length=2985bp|location=Sequence derived from alignment at CM002461.1:10811..13795+ (Nannochloropsis gaditana)
CGCCATTTAGTCGATTGATAAATCCAAGCGATTTCTCACTATCTACATAC
GTTTATTGTTGTATTTAAAAATTATTACATTCGCTCTGTTTCTCCCTCTT
GACTTCCTTGCGCCACGTGGTCGCTAGGGAAGACGAAACCAGTATCTTCA
TCACGACATGGCCCCCGCCCCAGCATGCACCGCCCACTCATTTTCGGCCT
TTTCTGGCTTGGGACATGATCTAATGCTATATATGGCTACCTTTCTCGAC
GGTTCTACGCTTATGTGCCTGGCAATGGGAAGCACGACGCAGCAATCCCT
GTTGCTACCTCCTGTTTCCTCAGGCCCGTTCTCGTCTTCGCTCAAGAAAT
CAAGCGGTTTTGCACTTTGGTATGACCTTTTACGCCACGATGAGATTGGA
TGGAAACTTTTACGGCGTCAGAAACATCATGAAATAGTTTCAAAAGCCTC
TAATTCAGAGAGTCCCACGGTCCCTCACCAGCTTTATGGCACCATGGATC
GTCTCCGCCGACTCGGCGCGGCCTCAGGCGTTGCTTGGCATCCCTTACCT
CGTCCAAACGCTCGACTCGGAGCCCCTCCTGCCATGGAGGGTCATGCGGC
ATGTTTGCTGGACGATCGATGGATGGTAATGGTGGGTGGCTTCACTAGCT
ATGGCGTGAGGAATGACGTCTTCGTTCTTGACACTTGGGCGCCTTTATCT
GCGCCGCACCCCGAATGGATACGATTCCCCGGCCCTGGTGTACATCAACG
CCAAGAGCCGGGTGATGTGTATGACCATGCTCAAGCAATTTCGCTCCCTG
TCTACGGCCATGTCTGTTGCCCCCTAGGGCCCCGGCATGTAGCTGTCTTC
GGTGGCGTGACCATGGGGGGATACCAGGGTGACATCAACGACTTCTATCT
TTTAGAGCTGAATTTCGAGGAGGTTTCCACTCATGGTCTTGAGAGTGATG
GGCTGAATGGCAAGAGGGGGGGCGTGAATGCCAGTAACCAGGGAGGTAgc
ggcaagaagggaaggagcgatgccgacagcagcaacagcagtcCTGGCAC
CAAAACGGTTTGCCGATCTGTACGTGTGCTGCGTCCCTCGGACCTTTTGG
GCCAGCCCCTCACATCTCGGGCCTATGCGACGATGACTTTGCTCTCCCGC
GTCGAttcgtcctcccctgccctctcaGCCCCACTTCGGCTCCTCATCCT
GGGCGGCATCCATCAAGGGCAAGCGATCCTTCAGCCGGAGGTGCTCACTT
TTCTGGGGGctgtggaggcggaaggtgagatgggcaggaggggggatgcG
GGCTCCTGGGAAGTGACATGCCCGAGGATCCCTGGGCCGGAGCCCAGCGT
GCGGATGGGCCACagctgctccttcctcccgcggTTGGGCTGTGTAGTGG
TAGTTGGGGGGTCAAATGGGAGCGACTTGCTGCGGAATGGACGGGAGCTG
TTGAATGATGTGAGCTTCATAttgttggaggaagaggagacacAGGGAat
cgggaagaggggggggggggaggaagaccggagaaggcgaagaacCGATT
GCTCCAGCCTGTGTGCTGGAAAGATCCCCTCTACTGGGGGTCGCGAGCTC
CCATCATGGAACACGAGACATTCACAGGCAGGACGCACACCGCGCATCTC
TTacgggaggacgaggagagtgGACGGGTGGTCAGCAAGGTCATCTTCTT
CGGGGGGGACGCGCGCTTGAGCGACGCCGTGGggttgctggaggtggagg
aggtggttcagtgggtgggaggacagaaggaaaggacgaaAGGAGACTAC
AAGGTAGGCTTTTCTCCCCTGAGGTCCCTGACGCGGCGGCCGAGTCCGCG
ACTCTCGCATGCCTCGGTGCTGGTGGGAGACACTCTCTTGGTCCACGGCG
GCTGGTGCGAGTACGAGCGGGGTGACATGCACTCCCTGTGTCTGGCCCCC
AAGGGCGTGCCGCCGACCCACGTGCCGGCTTCGCGTAGCCTCTCACAGAT
GGGGGCTCGGATGGTAGACGGCCTGTGGAGCACTGCAGAGGAAGACAGCC
AGGACAGCTCCTGgcatggggaagaggaggaggaggaggaggaaatgtcg
gaggatgaaggggaggaagaaggggaggaagaagaggaggagcaacaTTG
ATTTAGGGGTCGTCTACTAAAGGACTTGCCTGAATCACGTGTCAACCTAG
GACAGCGGGGGGATGTTGGGAGGCAAGCAGCTAGAccagggagtgggagg
ctcTGCATCGTGAAGGGGGGACAAAGGCTGGGACTTACACGGCGGGGATG
GCGAAAAGCGGCAATGCAGGTGTCTTGGGTGGTTACATGACAAAAGAAGA
GTCAGTTGACGATACGCTTTTTTCCAAGACAAAGACATTGTTGTACACCG
TGAACACGGCGTGCGGGAAAGCGTGGCTTGACGACGTGGTCTGTTGTATA
GGTCGTGAGCATGATTAAGGATGGAAGTGTTTGTACGTAGGTTCAAGAGA
TATAttaagggaaaaaagggcaggaaggcgcGGAGCCTTTTCAAGCCTGT
GCGGTGCTCAAGAGTACAGAGGAGTCGGGAAAAAAGGTGTGTCATGTGCC
TGGGTAAGAGCACATCTGAGACTCTAACGGCCTATGTTCTCAGTGGGCGA
GGACAATACCACGAATTCTATGCAggtatggaagaggaaagaccAATATT
TATTATTCATATGTTGTGATGAATTTGTGAGAGAAACGATTTTTCAAAGG
AGCTTTCCGGTACGATGTCAGCGTGAAATTCTTGTGTTGAGTGACATTCG
ATCAAAACGGCTCCGATTTGGCCATGGTGTTCAAAAAGAATTCTGGTGAA
GTTGTAGGGGAAAGTAAAGGTAGCGTCACAATAATAGAGCACAAAGAGAC
AAGACAGGAGAGAGCTGATACATTATACGTTATGCAGGTATTCTTTGGTA
AGATGAACTACAAACTTCGGGACACACCCACCAGC

Coding sequence (CDS) from alignment at CM002461.1:10811..13795+

>rna3287 ID=rna3287|Name=rna3287|organism=Nannochloropsis gaditana|type=CDS|length=1563bp|location=Sequence derived from alignment at CM002461.1:10811..13795+ (Nannochloropsis gaditana)
ATGGCCCCCGCCCCAGCATGCACCGCCCACTCATTTTCGGCCTTTTCTGG
CTTGGGACATGATCTAATGCTATATATGGCTACCTTTCTCGACGGTTCTA
CGCTTATGTGCCTGGCAATGGGAAGCACGACGCAGCAATCCCTGTTGCTA
CCTCCTGTTTCCTCAGGCCCGTTCTCGTCTTCGCTCAAGAAATCAAGCGG
TTTTGCACTTTGGTATGACCTTTTACGCCACGATGAGATTGGATGGAAAC
TTTTACGGCGTCAGAAACATCATGAAATAGTTTCAAAAGCCTCTAATTCA
GAGAGTCCCACGGTCCCTCACCAGCTTTATGGCACCATGGATCGTCTCCG
CCGACTCGGCGCGGCCTCAGGCGTTGCTTGGCATCCCTTACCTCGTCCAA
ACGCTCGACTCGGAGCCCCTCCTGCCATGGAGGGTCATGCGGCATGTTTG
CTGGACGATCGATGGATGGTAATGGTGGGTGGCTTCACTAGCTATGGCGT
GAGGAATGACGTCTTCGTTCTTGACACTTGGGCGCCTTTATCTGCGCCGC
ACCCCGAATGGATACGATTCCCCGGCCCTGGTGTACATCAACGCCAAGAG
CCGGGTGATGTGTATGACCATGCTCAAGCAATTTCGCTCCCTGTCTACGG
CCATGTCTGTTGCCCCCTAGGGCCCCGGCATGTAGCTGTCTTCGGTGGCG
TGACCATGGGGGGATACCAGGGTGACATCAACGACTTCTATCTTTTAGAG
CTGAATTTCGAGGAGGTTTCCACTCATGGTCTTGAGAGTGATGGGCTGAA
TGGCAAGAGGGGGGGCGTGAATGCCAGTAACCAGGGAGGTAgcggcaaga
agggaaggagcgatgccgacagcagcaacagcagtcCTGGCACCAAAACG
GTTTGCCGATCTGTACGTGTGCTGCGTCCCTCGGACCTTTTGGGCCAGCC
CCTCACATCTCGGGCCTATGCGACGATGACTTTGCTCTCCCGCGTCGAtt
cgtcctcccctgccctctcaGCCCCACTTCGGCTCCTCATCCTGGGCGGC
ATCCATCAAGGGCAAGCGATCCTTCAGCCGGAGGTGCTCACTTTTCTGGG
GGctgtggaggcggaaggtgagatgggcaggaggggggatgcGGGCTCCT
GGGAAGTGACATGCCCGAGGATCCCTGGGCCGGAGCCCAGCGTGCGGATG
GGCCACagctgctccttcctcccgcggTTGGGCTGTGTAGTGGTAGTTGG
GGGGTCAAATGGGAGCGACTTGCTGCGGAATGGACGGGAGCTGTTGAATG
ATGTGAGCTTCATAttgttggaggaagaggagacacAGGGAatcgggaag
aggggggggggggaggaagaccggagaaggcgaagaacCGATTGCTCCAG
CCTGTGTGCTGGAAAGATCCCCTCTACTGGGGGTCGCGAGCTCCCATCAT
GGAACACGAGACATTCACAGGCAGGACGCACACCGCGCATCTCTTacggg
aggacgaggagagtgGACGGGTGGTCAGCAAGGTCATCTTCTTCGGGGGG
GACGCGCGCTTGA

Synonyms

Publications