rna3272, rna3272 (mRNA) Nannochloropsis gaditana

Overview
Namerna3272
Unique Namerna3272
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length759
Alignment locationCM002460.1:1194945..1196487 -

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Properties
Property NameValue
Productankyrin unc44
Orig transcript idgnl|cribi|Naga_100237g4.1704.mrna
Orig protein idgnl|cribi|Naga_100237g4.1704
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1194945..1196487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100237g4gene3150Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3272rna3272-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27412.1cds3263Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3272 ID=rna3272|Name=rna3272|organism=Nannochloropsis gaditana|type=mRNA|length=759bp
ATGAAATGGGTCACGGATGAGCCTCGTCACGGACCGGCTTACAGCATAGA
GGCATGTTCGATGCGGACTGTCCTCACCTTAAGCATGGTCTCCGATGAAC
GTGTTGATACTACCATCAAGAGCCCGCAACGATGGCAGGGAGGGGAGCTT
AAGACGCATCAAAGATTTTCGACCTCTGACGAACTAGTGACTTTTGTGCG
TCTCCTCACTCCAACTTTTCCTTTGTTAGGAGGTCGAGGCAGAAAGGAGA
GACAAGGAAGGCGGGAAAAGAACCGAAGGAAGAAAAGTGAATCTATCTAT
TTCTACCTGACAGCGAGTAACGTAAGAATAGTACCAGCGAAAGGACTATA
TAACGTGGAGAAGGGTGGCGGAAGCAAAGGGGAAGGACGTGAGACAAGGA
TCAAGGTCACGGGTCGGGCGTTTGGATGGTCGGAAACAGCCCAGGCATCA
GACGGCTATACGAGGGACAAAACAAATAAGATTGTAGATTTGCGTAATCC
GCTGTCGTTGTGGCAGAAGAACTGCAGCGGCGTGAATGTGGGCGGGAGAC
CTAGACAACGGAGGATCAGAAAAGGGGCTCGTCTGGATGACATAATATAT
GGAACGGAAGGGAAACAATACAGCAACCTTTCACCACACTTTCACCGGGA
CCAGAATAAATTCATGACAAGCAATCATACCCGTCAATCAGGAACTAGAA
AGAGCAAAGAGAGGTCCGCGACTGAAGTCGGTCCGGACGGAGGGCGAATG
ACGGTATGA
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protein sequence of rna3272

>rna3272-protein ID=rna3272-protein|Name=rna3272|organism=Nannochloropsis gaditana|type=polypeptide|length=459bp
MATSTEFMDTANNHITMPLVAAPHQLAGAMAIHEATRNKDFVALDRLLNE
NKSLIHAPDVVGRSPLMMSSLRGHVDVCEWLLDHGAPLNAVDINRRSAMY
NAASYGFVQVVKLLMERGADPKIGDCEGNVPIIAAAYYGYEDVVRYLLDS
KHGQDPDDLDRKGERRWTGLYLSCEAGYVKIARMFLQVGADPTIADNHGF
TPLEVARKMSNWRCARLLERALREPARVACLVKAHALMESKYVMKEGVKA
MDGRRGDNIFRMKTRMTQKNKFLEVTPPFLRMRVENKQPLPVVDIGGAKV
ISSTLQGEKKRRTRKRAGSLRSAKRRRGELREGKIDLGKKILLQEQAANQ
SKCSDTGYEGTQPILIHESRQKVARYHTDEEHYGSGAGLGSRTNAISSIF
LSPIFFQTLQDGKNTTIGDAEKEEEEDEVVAVTRYLVQGRLPRELFNEVV
EMMTPRWMS
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mRNA from alignment at CM002460.1:1194945..1196487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3272 ID=rna3272|Name=rna3272|organism=Nannochloropsis gaditana|type=mRNA|length=1543bp|location=Sequence derived from alignment at CM002460.1:1194945..1196487- (Nannochloropsis gaditana)
ATGGCTACCTCGACTGAATTCATGGATACTGCTAACAATCATATTACTAT
GCCTTTGGTTGCTGCTCCGCATCAGCTTGCTGGGGCGATGGCGATTCACG
AAGCAACGCGCAATAAAGACTTTGTTGCCTTAGACCGCCTTTTAAATGAA
AACAAAAGCCTGATCCATGCCCCTGACGTGGTAGGACGCTCACCTTTGAT
GATGAGTAGTTTAAGGGGTCATGTAGATGTTTGTGAATGGCTTCTCGACC
ACGGAGCGCCATTGAATGCTGTAGACATCAACAGACGCTCAGCTATGTAT
AACGCTGCCTCGTACGGGTTTGTGCAAGTCGTCAAATTGCTGATGGAGCG
GGGTGCAGATCCTAAAATTGGAGACTGTGAAGGAAATGTACCTATAATTG
CAGGTAAGAAAAGACAAATGCCGGTGCACTGGCCACGCGTCATTGCAAAA
TTGATTGGGAAAGTGCGTCCCAAGCCCAAAAGCTTTCAACCAATATTATG
TTTTTCTTTGGTATGACCCACTTTATACTTTATGTAACCAATTGCTATAC
CATATCCTTGATATAGCTGCCTATTATGGGTACGAGGACGTGGTACGCTA
CCTATTAGATTCTAAGCATGGGCAAGACCCTGACGACCTCGACCGGAAGG
GGGAGCGACGGTGGACTGGACTCTACCTTTCTTGTGAGGCAGGCTACGTA
AAAATCGCCCGAATGTTCCTTCAGGTAGGGGCAGACCCAACCATTGCCGA
CAATCACGGCTTCACGCCTCTGGAGGTTGCGCGAAAGATGAGCAATTGGC
GGTGTGCTCGCCTTTTGGAACGGGCTCTGCGGGAGCCAGCGCGGGTAGCG
TGTTTGGTCAAGGCCCATGCCCTTATGGAATCCAAGTACGTGATGAAAGA
AGGTGTTAAGGCGATGGACGGAAGGAGGGGAGACAATATTTTTAGAATGA
AGACCAGGATGACGCAAAAAAATAAGTTCTTGGAGGTGACTCCTCCTTTC
TTACGCATGAGAGTAGAGAATAAGCAGCCCTTACCCGTTGTAGATATTGG
AGGTGCAAAGGTCATATCAAGTACTTTGCAGGGAGAAAAGAAAAGAAGGA
CTAGGAAGCGGGCTGGCTCCCTGCGCTCGGCGAAACGAAGAAGGGGAGAG
CTAAGAGAAGGAAAAATCGACCTTGGGAAAAAAATTCTGCTTCAAGAGCA
AGCAGCAAATCAAAGCAAGTGCAGTGATACTGGGTATGAAGGAACACAGC
CGATATTAATCCATGAAAGTAGGCAGAAGGTGGCGCGCTATCATACAGAT
GAAGAGCACTACGGAAGTGGAGCGGGCTTAGGGAGCAGGACCAATGCCAT
CTCCTCCATATTTTTGTCGCCGATATTTTTCCAGACATTACAAGATGGGA
AAAATACAACGATAGGGGACGCTGAGAAAGAGGAAGAAGAAGATGAGGTT
GTAGCTGTGACAAGATATCTGGTACAAGGAAGACTGCCTCGGGAGCTTTT
CAATGAAGTGGTTGAGATGATGACCCCCCGTTGGATGAGCTGA
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Coding sequence (CDS) from alignment at CM002460.1:1194945..1196487-

>rna3272 ID=rna3272|Name=rna3272|organism=Nannochloropsis gaditana|type=CDS|length=2760bp|location=Sequence derived from alignment at CM002460.1:1194945..1196487- (Nannochloropsis gaditana)
CTGCCTATTATGGGTACGAGGACGTGGTACGCTACCTATTAGATTCTAAG
CATGGGCAAGACCCTGACGACCTCGACCGGAAGGGGGAGCGACGGTGGAC
TGGACTCTACCTTTCTTGTGAGGCAGGCTACGTAAAAATCGCCCGAATGT
TCCTTCAGGTAGGGGCAGACCCAACCATTGCCGACAATCACGGCTTCACG
CCTCTGGAGGTTGCGCGAAAGATGAGCAATTGGCGGTGTGCTCGCCTTTT
GGAACGGGCTCTGCGGGAGCCAGCGCGGGTAGCGTGTTTGGTCAAGGCCC
ATGCCCTTATGGAATCCAAGTACGTGATGAAAGAAGGTGTTAAGGCGATG
GACGGAAGGAGGGGAGACAATATTTTTAGAATGAAGACCAGGATGACGCA
AAAAAATAAGTTCTTGGAGGTGACTCCTCCTTTCTTACGCATGAGAGTAG
AGAATAAGCAGCCCTTACCCGTTGTAGATATTGGAGGTGCAAAGGTCATA
TCAAGTACTTTGCAGGGAGAAAAGAAAAGAAGGACTAGGAAGCGGGCTGG
CTCCCTGCGCTCGGCGAAACGAAGAAGGGGAGAGCTAAGAGAAGGAAAAA
TCGACCTTGGGAAAAAAATTCTGCTTCAAGAGCAAGCAGCAAATCAAAGC
AAGTGCAGTGATACTGGGTATGAAGGAACACAGCCGATATTAATCCATGA
AAGTAGGCAGAAGGTGGCGCGCTATCATACAGATGAAGAGCACTACGGAA
GTGGAGCGGGCTTAGGGAGCAGGACCAATGCCATCTCCTCCATATTTTTG
TCGCCGATATTTTTCCAGACATTACAAGATGGGAAAAATACAACGATAGG
GGACGCTGAGAAAGAGGAAGAAGAAGATGAGGTTGTAGCTGTGACAAGAT
ATCTGGTACAAGGAAGACTGCCTCGGGAGCTTTTCAATGAAGTGGTTGAG
ATGATGACCCCCCGTTGGATGAGCTGAATGGCTACCTCGACTGAATTCAT
GGATACTGCTAACAATCATATTACTATGCCTTTGGTTGCTGCTCCGCATC
AGCTTGCTGGGGCGATGGCGATTCACGAAGCAACGCGCAATAAAGACTTT
GTTGCCTTAGACCGCCTTTTAAATGAAAACAAAAGCCTGATCCATGCCCC
TGACGTGGTAGGACGCTCACCTTTGATGATGAGTAGTTTAAGGGGTCATG
TAGATGTTTGTGAATGGCTTCTCGACCACGGAGCGCCATTGAATGCTGTA
GACATCAACAGACGCTCAGCTATGTATAACGCTGCCTCGTACGGGTTTGT
GCAAGTCGTCAAATTGCTGATGGAGCGGGGTGCAGATCCTAAAATTGGAG
ACTGTGAAGGAAATGTACCTATAATTGCAGCTGCCTATTATGGGTACGAG
GACGTGGTACGCTACCTATTAGATTCTAAGCATGGGCAAGACCCTGACGA
CCTCGACCGGAAGGGGGAGCGACGGTGGACTGGACTCTACCTTTCTTGTG
AGGCAGGCTACGTAAAAATCGCCCGAATGTTCCTTCAGGTAGGGGCAGAC
CCAACCATTGCCGACAATCACGGCTTCACGCCTCTGGAGGTTGCGCGAAA
GATGAGCAATTGGCGGTGTGCTCGCCTTTTGGAACGGGCTCTGCGGGAGC
CAGCGCGGGTAGCGTGTTTGGTCAAGGCCCATGCCCTTATGGAATCCAAG
TACGTGATGAAAGAAGGTGTTAAGGCGATGGACGGAAGGAGGGGAGACAA
TATTTTTAGAATGAAGACCAGGATGACGCAAAAAAATAAGTTCTTGGAGG
TGACTCCTCCTTTCTTACGCATGAGAGTAGAGAATAAGCAGCCCTTACCC
GTTGTAGATATTGGAGGTGCAAAGGTCATATCAAGTACTTTGCAGGGAGA
AAAGAAAAGAAGGACTAGGAAGCGGGCTGGCTCCCTGCGCTCGGCGAAAC
GAAGAAGGGGAGAGCTAAGAGAAGGAAAAATCGACCTTGGGAAAAAAATT
CTGCTTCAAGAGCAAGCAGCAAATCAAAGCAAGTGCAGTGATACTGGGTA
TGAAGGAACACAGCCGATATTAATCCATGAAAGTAGGCAGAAGGTGGCGC
GCTATCATACAGATGAAGAGCACTACGGAAGTGGAGCGGGCTTAGGGAGC
AGGACCAATGCCATCTCCTCCATATTTTTGTCGCCGATATTTTTCCAGAC
ATTACAAGATGGGAAAAATACAACGATAGGGGACGCTGAGAAAGAGGAAG
AAGAAGATGAGGTTGTAGCTGTGACAAGATATCTGGTACAAGGAAGACTG
CCTCGGGAGCTTTTCAATGAAGTGGTTGAGATGATGACCCCCCGTTGGAT
GAGCTGAATGGCTACCTCGACTGAATTCATGGATACTGCTAACAATCATA
TTACTATGCCTTTGGTTGCTGCTCCGCATCAGCTTGCTGGGGCGATGGCG
ATTCACGAAGCAACGCGCAATAAAGACTTTGTTGCCTTAGACCGCCTTTT
AAATGAAAACAAAAGCCTGATCCATGCCCCTGACGTGGTAGGACGCTCAC
CTTTGATGATGAGTAGTTTAAGGGGTCATGTAGATGTTTGTGAATGGCTT
CTCGACCACGGAGCGCCATTGAATGCTGTAGACATCAACAGACGCTCAGC
TATGTATAACGCTGCCTCGTACGGGTTTGTGCAAGTCGTCAAATTGCTGA
TGGAGCGGGGTGCAGATCCTAAAATTGGAGACTGTGAAGGAAATGTACCT
ATAATTGCAG
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Synonyms
Publications