rna3262, rna3262 (mRNA) Nannochloropsis gaditana

Overview
Namerna3262
Unique Namerna3262
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3027
Alignment locationCM002460.1:1151091..1152850 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100138g4.7682.mrna
Orig protein idgnl|cribi|Naga_100138g4.7682
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1151091..1152850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100138g4gene3141Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27421.1cds3253Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3262rna3262-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3262 ID=rna3262|Name=rna3262|organism=Nannochloropsis gaditana|type=mRNA|length=3027bp
GACAGCCCACCCACGGCGACGTCTAGGGGGATTCCATGCGGCCTCCACCG
CACTTTATACCTGATACCCCACATCGACGGAGACGGTCTGCAGTTTTCAC
CTCAGTAGCATTATGCTTCATTGCTCCATTATTCTACATCGTCTGTCTCA
TATCGTACCACATGGAGGGCCAAGACGACGTCCTCAAGTTCTCTATTTCC
AATGCCTTTGCTTCTTCAAAACCAAAGAAAGAGAGCTTGATTATCAAAGC
TGCAAGTTCGAAAGGCGGAATAGGAATCCCCCTTGTACAAAGCAAGGAGA
ACCATCGTACCTTCAGCACTATAATTCGGCATGCCCTCAAACCTTTAGTA
CCGGGTCTAATGATCGCTGCGTCCCTTGATGAAGAAAGTATGAGTGTACC
TTCCTCCCAAAGACGGGCACTAACAAGGATGCAGAGCTCGGAGAGCCCAA
TGCCAGTAAAGGAAGAAGAGGAACGTTCCTCTGACGACTTCAGGCGGCTG
GCCTCGGGCCCGGGGGGAATCAAGCTACAAAGTATCTCTGACGCGCAATA
CGTTGGGATGGTAGGTCTTGGCACACCGGCTCAATACTTTCGCGTCCTAT
TTGATACAGGATCAACGGATGTTTGGGTGCCCGCAGCGAATTGTCCGTCG
TGCGGTCCGGGCCGGCGGGGATTTCATCCTGGGGCTTCTCGTACTTACCG
GGACGTATTGGAAAAGGATGACGATATGGAGGACGACGATGGAGTCCTGC
CTCGGTTGTTCGAGGCGATGTATGCCGATGGAATTGTTGCGGGAAAGAAG
GGCGAGGATACATTAAGAATTGGAGATGTTGCCGTTGAGGGCATAAAATT
TGGTCAGGCAATCTATGAAGATGGAGAGCTTACATTAGCGTCCTGGGATG
GTGTGGTTGGCCTGGGCCTCGGTAAAGCGGGGGAGATTAGCAAGCCGACG
GTGCTGGAGGCGTTGCGGGAGCAGCATCCCGATCTGCCTTTCCATTTCTC
TGTCTTCTTGGCAGCAGACGACCGGGGATTGGTCGAAGAATCAAGCTCGG
AGCTACGCTTGGGAGGCTACGACCTAGACAAGGTAGGGCAAAACGCTTCT
TGGCACTTCGCTCCACTAATTCTGGACGAAGGAGGGCGTGCAGGGAAGAG
CTGGGGATGGAACGGGGAAGAAGAGGAGTCGATAAGCATAATGAGACAAG
GCAGGTGGTCCGTCGGCGTGAATGGCGTGGAGGTCCGTGCACGCAACCAC
CAGCAGCCGGGCCGAGGTGAAATTTTGCGACTTGAAGAAAAGAAGGAGCT
GAATGGAGGCGGTACAAATGAAGCGGGATGGGGTCACGGCATCGCCATTG
TGGACACAGGCGCCTCCCTCTTCATTCCTCCATCGACGGAATATCCCCGC
CTAATTTCTCTCATCACGCAGGGCCTTCACTGCACGGTGTCCAGTACGTA
TAGCTCCACGAAAACTCCCTCGTCTGGGTGGCTTCCGACTTGCTACGGCG
TTTCCGTCTCCGATTTTCCGGATTTGGTCGTTCGCTTCCAAGATGGACCC
TCCCTGCCCCTCCGCGCGGAAGACTATGTCTCGTGTTCCCTCAGCATCTG
TATCCTGCTCCTACAAGACGTCGCTGACAATCCCTTTTGGGTCCTGGGCG
AGATCTGGCTCGAGGCCTATTACACGCTCTTTGACGTTGCAAACCAAAGG
CTAGGCTTTGCCTGCCCTCGGGAAGGTTGCGCAGGAGGGTCCTGGCATGG
AGAACGGCATGCATATGGGCCGTTCGTCTGGGCGAAATTGGCGCCGTTCC
TTGCCATCTTGTTGGGGATTGTGGGATGGCAGTGTTGGGGTCTCATTTTT
GAGGTGGTGGAATTCATTTTTCTCGAGGAAAGACGGGTAAGAAGCGTCGA
AGGGAGGGAAGAAGAAGGGGTGGAAAGAGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAGAGGAGGGGGAGGAAGAGGAGGGGGAAGCCTCTCGATTTTGG
TTCAATTTACTCAATAGGCATGACAGTCGGGGCACACAACATTTGGAAGA
GGAATCTGGTGATGAGGAGGTTAGCTTTGCTGTCCTTGATTCGAGAGCTG
CTCGCCGCGCGGTGTCGGCTTTAACGAGCGTGCCACAGAGAGGATTTCGG
TGGATGTGGGGTGAGAGAGACTCGATATGGACGACCTCTTTTGTTAATAG
ATGGTGGCCTTCAGCAAGGCGGTCGTCGCAAGAGCGTCGGAGCCGGACCA
TGTCTCTGGTGACGTTTCAATCCGATTCAGGCGGAGAGAACGGGGGCTCA
AAGGACGAGGATGAGCTGCTCCGTCACGATGGAGAGGAAGGTGTTATATT
TAAGGAAACAATGGACAAAGGAGGAGGAAACGGATGTCATGGAAGCCAGC
GGCGTCGTGGGTGGTCGTTAGAAGGTCTCTATCCCCGCCCGCGGGGTCGG
ACGTCGAGCAACAGCCTTACTGTTATACCAGCTTCGGAGACTCCCAATGG
AGAGGAGATAGGTAAAGGTAGGTCTTAATGAAAAACATTACTGAGGACCG
CCTCTCATGTATATTTCAAACATAATTTTTGGGGTGTACGCCTCGTATCG
TGATCATGCCGGTATTTTAAATGTTAAAAAAAGTTACTTGGAAGTATGAT
GATTTATTGATATAAAAAGAGGTCGTGCTCGTGATTGCCTTGTATGAACT
TTACTGTGGGCTGATGCCTATCTTCAGACAGGAGTGTTGGGACCTTGGTC
TGTCTAGGAGCGTGGGTTTTCATAGGGAATGGAGTGTGTGAAGGGAGTGT
TTTCTTTGTTAGTTTGAAAGTTATTGCGAGAGCGGGAAAAGGGGGTGAGT
GTCACCTTAGAACTATGGGAGTCACGGCCTACTATGTTCCTTGACCCGTC
TTGGAAACTTTTCATACTTTCACAGTTAGAACATAAATGGTGTCTTGATG
GCAACATCTCATTTCAATTCTCGACTCGCGACTCGATTTTTTTTTCATAT
CTTCATATTCCTTTACCCAAGCACAAA
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protein sequence of rna3262

>rna3262-protein ID=rna3262-protein|Name=rna3262|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MPHYHEGKHNDCPVTWPGDLYMFGKIPRYNHGQVLYQRRRWNVLPGHDLP
RRSAYHASVSWRQRNDESRGLRSYFISPHYHGDYRQSTNLSYRISNVCGR
REDLFAPGKVQSKVGATLQRIMTKCIMVIPQKRLLRRFRTITMMIKCRWQ
IAKSSSTLYAHNNYLNLPRREAGIVV
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mRNA from alignment at CM002460.1:1151091..1152850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3262 ID=rna3262|Name=rna3262|organism=Nannochloropsis gaditana|type=mRNA|length=1760bp|location=Sequence derived from alignment at CM002460.1:1151091..1152850- (Nannochloropsis gaditana)
GGGGAGGTTAGCGGGGAGAGGCAGGAGACTGCACATGCCTCATTATCACG
AGGGAAAACACAACGATTGCCCAGTTACGTGGCCGGGAGATCTGTACATG
TTTGGAAAGATACCTCGCTACAATCATGGCCAGGTGCTGTACCAGCGGAG
ACGGTGGAATGTACTTCCTGGACACGATCTTCCACGCCGGAGCGCGTATC
ATGCCAGTGTATCATGGCGACAAAGGAATGATGAATCTCGCGGGTTGAGG
TCTTATTTCATTTCACCTCACTATCATGGAGATTATCGGCAAAGTACCAA
CCTTAGCTATCGCATTTCAAATGTTTGCGGAAGGAGGGAGGATTTATTTG
CGCCAGGTAAGGTTCAGAGTAAAGTGGGGGCCACCCTTCAACGCATTATG
ACCAAATGCATTATGGTGATACCCCAGAAAAGGCTTCTAAGACGTTTCCG
CACGATAACCATGATGATCAAATGTAGATGGCAGATTGCTAAATCGTCTT
CGACGCTTTATGCGCACAACAACTACCTAAACTTGCCGCGCCGCGAGGCC
GGCATAGTTGTCTGACCGTGCTCAAATTGAGACTCTTTAATGACCTCATG
TTCCATCAAAGTGCTCTCAATCTTTCATGTGAAAATACTTCACTTGTTTT
CTTTTTCGAATGGAAAGCTGGTCAGATGTGTCCTTCCGCAGGTTTATGTC
CTGCACTATGAAACAGCCGCCGGGTAGTCGCGGGAAGTCCGTAGCTCAAC
GCACGATCGGCGGCGCTCATCTACCAATAAAGGGAGACGAACGGGTGACG
TATTTGAAGGATCTGGAAAAACAGAAGGAGCGAGGAAGACTAGTGGACCG
TGAAACACAAAAGGATGTTTGCGTTGGGAATGGAACTTTCCCAGTGCCCG
GGTCAAACCTGAGATTCTAAAAAGAGCTTGTCACCTTTGCTGTTAAACAG
AACTTACACTGAAAATTAAATATAAACATAATCGAGTCTCACTGCTTCCT
TATTGTATCCATTTACCATTACAAACAGGAAGATCAGGTACTAATTAGGC
AATGTTCGTCTCGATAGCAAGCCATTCTTTGTAGTCAGTATTGGACACGA
CAAATGCGTCAAGGCAAAGATCGCAAGGTATTGTACTTGCAATAATATAG
CCTTCCGCATAGTCTACGTAAAATGTTGAAGAGGAGATCTCCATACCGAA
GTCCATTCATGGAAATGGAAGAAATGATGTCGGAAAAATGGTCGAGCCCA
TGGCAAGCCATGACTAGAATGGAAGAGAAATTATCCTAGATCGGCAACGA
ACTAACCAACCAAGCGTAGCGAGAAGACTTTTGTGAACGGAAGGATCGTC
CAAACAGATAAGAATTCATCAGGGAATATACGAACGAATCGACATTCTTA
AGTCTCGGCCAAGGGGCTGTTAGCCGAGGGTGGCTTACGGTAAGCGAGTG
GGGACCTGTTAAAAATGTCCTTCCTGTTTAAATAGAGAGACTGATGATGT
CCTCGATAGATGGATGTAAAGGCGTACCTTGGGCGCCTGCCCAGGGCACC
TGCCTAACCGAGCCTTCATCTATACATATCGAGGAAAATCAATCTCTCTC
TTTTAGCCGACAGAATATTTTTAACAGTTCCCCCTTCGCTGGGCGTAAGC
CGCCCTTCGCTCCCTATGCCCCCAATTGAAGTCTAATCTGTTCGGTCGCT
CCTTCTTAGGGTGCTCACCCAAAAAAATCTTACGTTCATGAAAGAAGTTA
TAGCTGCACT
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Coding sequence (CDS) from alignment at CM002460.1:1151091..1152850-

>rna3262 ID=rna3262|Name=rna3262|organism=Nannochloropsis gaditana|type=CDS|length=531bp|location=Sequence derived from alignment at CM002460.1:1151091..1152850- (Nannochloropsis gaditana)
ATGCCTCATTATCACGAGGGAAAACACAACGATTGCCCAGTTACGTGGCC
GGGAGATCTGTACATGTTTGGAAAGATACCTCGCTACAATCATGGCCAGG
TGCTGTACCAGCGGAGACGGTGGAATGTACTTCCTGGACACGATCTTCCA
CGCCGGAGCGCGTATCATGCCAGTGTATCATGGCGACAAAGGAATGATGA
ATCTCGCGGGTTGAGGTCTTATTTCATTTCACCTCACTATCATGGAGATT
ATCGGCAAAGTACCAACCTTAGCTATCGCATTTCAAATGTTTGCGGAAGG
AGGGAGGATTTATTTGCGCCAGGTAAGGTTCAGAGTAAAGTGGGGGCCAC
CCTTCAACGCATTATGACCAAATGCATTATGGTGATACCCCAGAAAAGGC
TTCTAAGACGTTTCCGCACGATAACCATGATGATCAAATGTAGATGGCAG
ATTGCTAAATCGTCTTCGACGCTTTATGCGCACAACAACTACCTAAACTT
GCCGCGCCGCGAGGCCGGCATAGTTGTCTGA
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Synonyms
Publications