|
|
Properties
| Property Name | Value |
|---|
| Product | aspartyl protease family |
| Orig transcript id | gnl|cribi|Naga_100138g2.7679.mrna |
| Orig protein id | gnl|cribi|Naga_100138g2.7679 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:1147194..1150220 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3261 ID=rna3261|Name=rna3261|organism=Nannochloropsis gaditana|type=mRNA|length=2128bp
CTCACTGGTTCATTTGTTGCCACAGATTAGCTTGATTTTGCGGTGTCAGT
TGAGGAGCCATGTCTGAACCTCCTGGCGCTCGGTCTTAGCCTGAGGATGC
CCAGACTGAACGAGTACTGCCTTGGATCGAAATCTCAAGCCGACTATCCT
ATAAACAATGCATTCCATATCATGTTTCAAATGTGCGGGGACGGGTCGCG
TGCAAATTAAGCGAAAGGTCAAACGATCTCATTGTGCTCAGGACAGTCCC
AACGACACTCCTCAGTCGTTGACGCCCCTACCAAAGTTACAACTGGCTGC
GGACGAAGCCCTGGTAACTAAAGGCAACCGCACAGCCCAAATCACTCGAA
CGTGTCATGTTTGTCAGGGTCGAGGAGAAATCGTCTCGACTAAAAAGCGG
CGGGGGATGGATAAGACCGGTGTCGTCACGATCCCTCGCCGTCCACCTGA
CTTCAAATTACGCGGCCCCTTACGTCCTTCGTCTATGACAAGCCCGCAGC
CTCAAGCAGGGGAAGCTCTATGCTGTCTCTCAGGAGATTGGCGGATCTTT
CAGCCCGTGGGAGGTCATCGGTACTCCACGGACGATGTAGTTACCGCCTG
GATCGCGGGTGAAGAGATGAGACGAGGCTGGGGACGTGAACTGTTGCGAG
GCGTCGAGTCAGACAAGGCTGATGGAAAATGCGCGGGCCTTTTGCTAATC
CGTGGTGGAGGAGAGAAGCAAGCAGATGGTAGAAGAGAGGAAGTCGTTCG
GGGGGCCCAGGAGCAGGGCGAGGGCCTTCGGGGATTGGACTTGGGCTGTG
GGTTGGGCAGCGTCCTGATGATGGTGTGCTGGCAGCTTCCTCGTCTTCAC
GCTGTCGGGATTGAAGCACAAGCCAGCTCGGTGGAGCGTGCGCGCCGCTC
ATTACTGGTCAACGGCTGTGCCGATCGCGCGTGTGTCCGCCATGGAGATT
TTCGAAATTTCTTCCCTTTGTCGTCGTCAGGCAGCGCTGCTGCCAAAATC
CGAACATCCCTCCCTGCGCCCCCTCCACCTCTTTCTCCTCTTGTATCCTC
GTCCTCGTCTCTCTCTTCTCCTGAACCGAGGGCTTTCGAGGCCCGCACTT
TTCATCTCATCACAGGCACCCCACCCTACTTCGACGGCCATGGTGCCCCT
GCTCCCTTCCACCCCGCAGATCCACCTATTTCTGTCACCTCGCTTTCTTC
CTGTACCTCCTCCACATCCTCCCTGGCCCTCCAGTCTTCTCCTTCCACGA
CCTCAACCGTCCTCAAAACTAAGAGTGGAAAAGCCCGCCTCCGTCCCTCT
TTGTTGCCTGCCGCGGAAGACCAACGACCATGCAACTTCGAACTGCGAGG
CGGTGTCGAAGCGTACATCCAGACGGCCGTGGTCGCTTTGAGCGGCAGAG
GGATATTTGTCATGTGTGCCTCGGATCTACCGGGCGTCGAGGCCCGTGTC
TTGCGAGCAGCAGCGGCGGAAGATCTTACAGTTTTGAGGAAAGTTGAGGT
GGAACCGAAGGAGGGGCAGCCGAACCTGTTTGCCGTCTATACGATGTGCC
ATGCGAATGTATCGCCCATGGCGATAGAAAAGAAGAGGAGAGGTCAAGAT
GGGAAGGACGGAAGTGTTGAGAGGGGGGAAAGCATGACGCATAGACTCAA
GGGAAGAGAACTGGATGAGGAAAATGGAAATGGAGCCACGCTAAGCACGG
GACACGAATGTGGATTTGATATGGTCGCGTCAGAACCAGGTATGGAGGGG
CAGAGAGTGAAAATTTTAGGAGGTGTAGAGACTGGCAGTGTGGGTTTGGA
GGGAGATGCACGAAAGCATGTATCACGGCAAAGAGAGCATGCGACGCGCT
CATCTATTAAAATACGAGAGCGTTTGCCAGTTCGGAAAGCGATGCCTTCG
ACTTTACAATCAAACCCCAAAGCATCTATCAATCGAAGGACATATGCCTA
TCGGCGGGTCCTTCATGACATGTGCATGCCTGACAACGAAATATGATTTT
GTGACCCTCTCGTGCGTGAAATAATAATTTTTAATTTGGTGGATTAGACT
CAATCTATATTCTGTTGATGCTAATCTACATTATATATATCGTGCGTGGA
TCTTGGAAATAATGCATCAGGGTTATCA back to topprotein sequence of rna3261 >rna3261-protein ID=rna3261-protein|Name=rna3261|organism=Nannochloropsis gaditana|type=polypeptide|length=830bp
MRPPPHFIPDTPHRRRRSAVFTSVALCFIAPLFYIVCLISYHMEGQDDVL
KFSISNAFASSKPKKESLIIKAASSKGGIGIPLVQSKENHRTFSTIIRHA
LKPLVPGLMIAASLDEESMSVPSSQRRALTRMQSSESPMPVKEEEERSSD
DFRRLASGPGGIKLQSISDAQYVGMVGLGTPAQYFRVLFDTGSTDVWVPA
ANCPSCGPGRRGFHPGASRTYRDVLEKDDDMEDDDGVLPRLFEAMYADGI
VAGKKGEDTLRIGDVAVEGIKFGQAIYEDGELTLASWDGVVGLGLGKAGE
ISKPTVLEALREQHPDLPFHFSVFLAADDRGLVEESSSELRLGGYDLDKV
GQNASWHFAPLILDEGGRAGKSWGWNGEEEESISIMRQGRWSVGVNGVEV
RARNHQQPGRGEILRLEEKKELNGGGTNEAGWGHGIAIVDTGASLFIPPS
TEYPRLISLITQGLHCTVSSTYSSTKTPSSGWLPTCYGVSVSDFPDLVVR
FQDGPSLPLRAEDYVSCSLSICILLLQDVADNPFWVLGEIWLEAYYTLFD
VANQRLGFACPREGCAGGSWHGERHAYGPFVWAKLAPFLAILLGIVGWQC
WGLIFEVVEFIFLEERRVRSVEGREEEGVEREEEEEEEEEEEEGEEEEGE
ASRFWFNLLNRHDSRGTQHLEEESGDEEVSFAVLDSRAARRAVSALTSVP
QRGFRWMWGERDSIWTTSFVNRWWPSARRSSQERRSRTMSLVTFQSDSGG
ENGGSKDEDELLRHDGEEGVIFKETMDKGGGNGCHGSQRRRGWSLEGLYP
RPRGRTSSNSLTVIPASETPNGEEIGKGRS back to topmRNA from alignment at CM002460.1:1147194..1150220- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna3261 ID=rna3261|Name=rna3261|organism=Nannochloropsis gaditana|type=mRNA|length=3027bp|location=Sequence derived from alignment at CM002460.1:1147194..1150220- (Nannochloropsis gaditana)
GACAGCCCACCCACGGCGACGTCTAGGGGGATTCCATGCGGCCTCCACCG
CACTTTATACCTGATACCCCACATCGACGGAGACGGTCTGCAGTTTTCAC
CTCAGTAGCATTATGCTTCATTGCTCCATTATTCTACATCGTCTGTCTCA
TATCGTACCACATGGAGGGCCAAGACGACGTCCTCAAGTTCTCTATTTCC
AATGCCTTTGCTTCTTCAAAACCAAAGAAAGAGAGCTTGATTATCAAAGC
TGCAAGTTCGAAAGGCGGAATAGGAATCCCCCTTGTACAAAGCAAGGAGA
ACCATCGTACCTTCAGCACTATAATTCGGCATGCCCTCAAACCTTTAGTA
CCGGGTCTAATGATCGCTGCGTCCCTTGATGAAGAAAGTATGAGTGTACC
TTCCTCCCAAAGACGGGCACTAACAAGGATGCAGAGCTCGGAGAGCCCAA
TGCCAGTAAAGGAAGAAGAGGAACGTTCCTCTGACGACTTCAGGCGGCTG
GCCTCGGGCCCGGGGGGAATCAAGCTACAAAGTATCTCTGACGCGCAATA
CGTTGGGATGGTAGGTCTTGGCACACCGGCTCAATACTTTCGCGTCCTAT
TTGATACAGGATCAACGGATGTTTGGGTGCCCGCAGCGAATTGTCCGTCG
TGCGGTCCGGGCCGGCGGGGATTTCATCCTGGGGCTTCTCGTACTTACCG
GGACGTATTGGAAAAGGATGACGATATGGAGGACGACGATGGAGTCCTGC
CTCGGTTGTTCGAGGCGATGTATGCCGATGGAATTGTTGCGGGAAAGAAG
GGCGAGGATACATTAAGAATTGGAGATGTTGCCGTTGAGGGCATAAAATT
TGGTCAGGCAATCTATGAAGATGGAGAGCTTACATTAGCGTCCTGGGATG
GTGTGGTTGGCCTGGGCCTCGGTAAAGCGGGGGAGATTAGCAAGCCGACG
GTGCTGGAGGCGTTGCGGGAGCAGCATCCCGATCTGCCTTTCCATTTCTC
TGTCTTCTTGGCAGCAGACGACCGGGGATTGGTCGAAGAATCAAGCTCGG
AGCTACGCTTGGGAGGCTACGACCTAGACAAGGTAGGGCAAAACGCTTCT
TGGCACTTCGCTCCACTAATTCTGGACGAAGGAGGGCGTGCAGGGAAGAG
CTGGGGATGGAACGGGGAAGAAGAGGAGTCGATAAGCATAATGAGACAAG
GCAGGTGGTCCGTCGGCGTGAATGGCGTGGAGGTCCGTGCACGCAACCAC
CAGCAGCCGGGCCGAGGTGAAATTTTGCGACTTGAAGAAAAGAAGGAGCT
GAATGGAGGCGGTACAAATGAAGCGGGATGGGGTCACGGCATCGCCATTG
TGGACACAGGCGCCTCCCTCTTCATTCCTCCATCGACGGAATATCCCCGC
CTAATTTCTCTCATCACGCAGGGCCTTCACTGCACGGTGTCCAGTACGTA
TAGCTCCACGAAAACTCCCTCGTCTGGGTGGCTTCCGACTTGCTACGGCG
TTTCCGTCTCCGATTTTCCGGATTTGGTCGTTCGCTTCCAAGATGGACCC
TCCCTGCCCCTCCGCGCGGAAGACTATGTCTCGTGTTCCCTCAGCATCTG
TATCCTGCTCCTACAAGACGTCGCTGACAATCCCTTTTGGGTCCTGGGCG
AGATCTGGCTCGAGGCCTATTACACGCTCTTTGACGTTGCAAACCAAAGG
CTAGGCTTTGCCTGCCCTCGGGAAGGTTGCGCAGGAGGGTCCTGGCATGG
AGAACGGCATGCATATGGGCCGTTCGTCTGGGCGAAATTGGCGCCGTTCC
TTGCCATCTTGTTGGGGATTGTGGGATGGCAGTGTTGGGGTCTCATTTTT
GAGGTGGTGGAATTCATTTTTCTCGAGGAAAGACGGGTAAGAAGCGTCGA
AGGGAGGGAAGAAGAAGGGGTGGAAAGAGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAAGAGGAGGGGGAGGAAGAGGAGGGGGAAGCCTCTCGATTTTGG
TTCAATTTACTCAATAGGCATGACAGTCGGGGCACACAACATTTGGAAGA
GGAATCTGGTGATGAGGAGGTTAGCTTTGCTGTCCTTGATTCGAGAGCTG
CTCGCCGCGCGGTGTCGGCTTTAACGAGCGTGCCACAGAGAGGATTTCGG
TGGATGTGGGGTGAGAGAGACTCGATATGGACGACCTCTTTTGTTAATAG
ATGGTGGCCTTCAGCAAGGCGGTCGTCGCAAGAGCGTCGGAGCCGGACCA
TGTCTCTGGTGACGTTTCAATCCGATTCAGGCGGAGAGAACGGGGGCTCA
AAGGACGAGGATGAGCTGCTCCGTCACGATGGAGAGGAAGGTGTTATATT
TAAGGAAACAATGGACAAAGGAGGAGGAAACGGATGTCATGGAAGCCAGC
GGCGTCGTGGGTGGTCGTTAGAAGGTCTCTATCCCCGCCCGCGGGGTCGG
ACGTCGAGCAACAGCCTTACTGTTATACCAGCTTCGGAGACTCCCAATGG
AGAGGAGATAGGTAAAGGTAGGTCTTAATGAAAAACATTACTGAGGACCG
CCTCTCATGTATATTTCAAACATAATTTTTGGGGTGTACGCCTCGTATCG
TGATCATGCCGGTATTTTAAATGTTAAAAAAAGTTACTTGGAAGTATGAT
GATTTATTGATATAAAAAGAGGTCGTGCTCGTGATTGCCTTGTATGAACT
TTACTGTGGGCTGATGCCTATCTTCAGACAGGAGTGTTGGGACCTTGGTC
TGTCTAGGAGCGTGGGTTTTCATAGGGAATGGAGTGTGTGAAGGGAGTGT
TTTCTTTGTTAGTTTGAAAGTTATTGCGAGAGCGGGAAAAGGGGGTGAGT
GTCACCTTAGAACTATGGGAGTCACGGCCTACTATGTTCCTTGACCCGTC
TTGGAAACTTTTCATACTTTCACAGTTAGAACATAAATGGTGTCTTGATG
GCAACATCTCATTTCAATTCTCGACTCGCGACTCGATTTTTTTTTCATAT
CTTCATATTCCTTTACCCAAGCACAAA back to topCoding sequence (CDS) from alignment at CM002460.1:1147194..1150220- >rna3261 ID=rna3261|Name=rna3261|organism=Nannochloropsis gaditana|type=CDS|length=2493bp|location=Sequence derived from alignment at CM002460.1:1147194..1150220- (Nannochloropsis gaditana)
ATGCGGCCTCCACCGCACTTTATACCTGATACCCCACATCGACGGAGACG
GTCTGCAGTTTTCACCTCAGTAGCATTATGCTTCATTGCTCCATTATTCT
ACATCGTCTGTCTCATATCGTACCACATGGAGGGCCAAGACGACGTCCTC
AAGTTCTCTATTTCCAATGCCTTTGCTTCTTCAAAACCAAAGAAAGAGAG
CTTGATTATCAAAGCTGCAAGTTCGAAAGGCGGAATAGGAATCCCCCTTG
TACAAAGCAAGGAGAACCATCGTACCTTCAGCACTATAATTCGGCATGCC
CTCAAACCTTTAGTACCGGGTCTAATGATCGCTGCGTCCCTTGATGAAGA
AAGTATGAGTGTACCTTCCTCCCAAAGACGGGCACTAACAAGGATGCAGA
GCTCGGAGAGCCCAATGCCAGTAAAGGAAGAAGAGGAACGTTCCTCTGAC
GACTTCAGGCGGCTGGCCTCGGGCCCGGGGGGAATCAAGCTACAAAGTAT
CTCTGACGCGCAATACGTTGGGATGGTAGGTCTTGGCACACCGGCTCAAT
ACTTTCGCGTCCTATTTGATACAGGATCAACGGATGTTTGGGTGCCCGCA
GCGAATTGTCCGTCGTGCGGTCCGGGCCGGCGGGGATTTCATCCTGGGGC
TTCTCGTACTTACCGGGACGTATTGGAAAAGGATGACGATATGGAGGACG
ACGATGGAGTCCTGCCTCGGTTGTTCGAGGCGATGTATGCCGATGGAATT
GTTGCGGGAAAGAAGGGCGAGGATACATTAAGAATTGGAGATGTTGCCGT
TGAGGGCATAAAATTTGGTCAGGCAATCTATGAAGATGGAGAGCTTACAT
TAGCGTCCTGGGATGGTGTGGTTGGCCTGGGCCTCGGTAAAGCGGGGGAG
ATTAGCAAGCCGACGGTGCTGGAGGCGTTGCGGGAGCAGCATCCCGATCT
GCCTTTCCATTTCTCTGTCTTCTTGGCAGCAGACGACCGGGGATTGGTCG
AAGAATCAAGCTCGGAGCTACGCTTGGGAGGCTACGACCTAGACAAGGTA
GGGCAAAACGCTTCTTGGCACTTCGCTCCACTAATTCTGGACGAAGGAGG
GCGTGCAGGGAAGAGCTGGGGATGGAACGGGGAAGAAGAGGAGTCGATAA
GCATAATGAGACAAGGCAGGTGGTCCGTCGGCGTGAATGGCGTGGAGGTC
CGTGCACGCAACCACCAGCAGCCGGGCCGAGGTGAAATTTTGCGACTTGA
AGAAAAGAAGGAGCTGAATGGAGGCGGTACAAATGAAGCGGGATGGGGTC
ACGGCATCGCCATTGTGGACACAGGCGCCTCCCTCTTCATTCCTCCATCG
ACGGAATATCCCCGCCTAATTTCTCTCATCACGCAGGGCCTTCACTGCAC
GGTGTCCAGTACGTATAGCTCCACGAAAACTCCCTCGTCTGGGTGGCTTC
CGACTTGCTACGGCGTTTCCGTCTCCGATTTTCCGGATTTGGTCGTTCGC
TTCCAAGATGGACCCTCCCTGCCCCTCCGCGCGGAAGACTATGTCTCGTG
TTCCCTCAGCATCTGTATCCTGCTCCTACAAGACGTCGCTGACAATCCCT
TTTGGGTCCTGGGCGAGATCTGGCTCGAGGCCTATTACACGCTCTTTGAC
GTTGCAAACCAAAGGCTAGGCTTTGCCTGCCCTCGGGAAGGTTGCGCAGG
AGGGTCCTGGCATGGAGAACGGCATGCATATGGGCCGTTCGTCTGGGCGA
AATTGGCGCCGTTCCTTGCCATCTTGTTGGGGATTGTGGGATGGCAGTGT
TGGGGTCTCATTTTTGAGGTGGTGGAATTCATTTTTCTCGAGGAAAGACG
GGTAAGAAGCGTCGAAGGGAGGGAAGAAGAAGGGGTGGAAAGAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAAGAGGAGGGGGAGGAAGAGGAGGGGGAA
GCCTCTCGATTTTGGTTCAATTTACTCAATAGGCATGACAGTCGGGGCAC
ACAACATTTGGAAGAGGAATCTGGTGATGAGGAGGTTAGCTTTGCTGTCC
TTGATTCGAGAGCTGCTCGCCGCGCGGTGTCGGCTTTAACGAGCGTGCCA
CAGAGAGGATTTCGGTGGATGTGGGGTGAGAGAGACTCGATATGGACGAC
CTCTTTTGTTAATAGATGGTGGCCTTCAGCAAGGCGGTCGTCGCAAGAGC
GTCGGAGCCGGACCATGTCTCTGGTGACGTTTCAATCCGATTCAGGCGGA
GAGAACGGGGGCTCAAAGGACGAGGATGAGCTGCTCCGTCACGATGGAGA
GGAAGGTGTTATATTTAAGGAAACAATGGACAAAGGAGGAGGAAACGGAT
GTCATGGAAGCCAGCGGCGTCGTGGGTGGTCGTTAGAAGGTCTCTATCCC
CGCCCGCGGGGTCGGACGTCGAGCAACAGCCTTACTGTTATACCAGCTTC
GGAGACTCCCAATGGAGAGGAGATAGGTAAAGGTAGGTCTTAA back to top
|