rna3256, rna3256 (mRNA) Nannochloropsis gaditana

Overview
Namerna3256
Unique Namerna3256
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1321
Alignment locationCM002460.1:1134602..1135642 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100899g3.9839.mrna
Orig protein idgnl|cribi|Naga_100899g3.9839
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1134602..1135642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100899g3gene3135Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3256rna3256-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27424.1cds3247Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3256 ID=rna3256|Name=rna3256|organism=Nannochloropsis gaditana|type=mRNA|length=1321bp
CCTCCTTCCCTCCGTCCCTCCCTCCCTCCCTCCCAGCTCCCGCGCCCACG
ATCTCATGGATGCGGAGGCCACTGGGCACGGCCAGCGTGCCTCCCTCCCC
TTATCCCCCTCCTCCTCCTCCGCCTCCGTATCCTCTTCCACAGCCGACGA
CGGCTTTTTCAGCGAGGGGGAGGGGGAGGGGGAGGGAGGGAAGGCAAGTC
GCGCCACCTCCTCCGAGGCTGTCCCAGCAGGAAGCGAGGAGGAGGAGGGG
GAGGAAGAGGAGGAGGAGGACGAAGAGGAGATGATGCGCATGGGCTCCTA
CCACTACCACAAGCAGCGCCACGGTCCAGGCGGACGCAGGAATTCATTCT
ACTCCGCATCCTCCTCCTTTGCTTCCTCCCCTCCCTCCCCCTCGTCCATG
CCCTCCTCCTCGCCCTCCCCCCCCCCTCCTACCTTAGGAGAGGTCGGAAG
ACGAGAGGGAAACTTGCGGGTGCTACAGATGGGTATGGCGCCTATTCAGC
AGGTGGGAAGACAGACGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGAGTGAGTCATCTGGCCATGGCGGGCGATGAGATCCTGGCGTGGGCT
GTACGATGCACACGTAGCCCCTCAAATTCCCTCCCGGCGGCGCGAAGGAG
TAGGCCATTTTCACGGCTTTAGCGCCCCTCCGAGCTTATTCGCAGGAATC
AATATCGCTCTGTCCACCGATGGTGCTATTTACCTCTGTATCTATCCATT
CCTCTATCCATCCACACATCGCTCCCTCTAGCCTTCCGATGAATGTATCC
ATCTACCCCCCACCTTTTCCATGTGCTCAGCCATCACTCCCCCCGCCAAG
CCATCCCTCCCTCCATCCATCCACCCCCGGCACCCCCCGCCTCCCTTCTC
CCTTTCCATCAGGCCTGGCGGGCACTCGCGCGCTGCGACAATCTGTGTGG
CCGCCTCCTCGGGCAAGCCGTCTCCGTGGAGGGCACAGGGGTGAGGGAGT
GGCTGTGCTGCCTGGTCACCTTCGGGCCGGGCCAAGAGGTAGGTAGGTAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGGCAATC
TTTGATGATTTCCTACGGTCCTGCAGGCGGTGGCCAAGTTGGGCAGCTTG
CCGCGGAGCGAGCGCGAGCACAACTTCCTTCCCAAGCTGAGCGTTAAGGT
AACGTCCGTGGTGTTTGAACGAGAAATTTGGAATTTCGATGCCGACTTAA
CGCATGTTTTTATGGATTCATGCACCCATATATATATATATATATACAAA
TCACCTGAGGGAGGGTTGGAG
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protein sequence of rna3256

>rna3256-protein ID=rna3256-protein|Name=rna3256|organism=Nannochloropsis gaditana|type=polypeptide|length=162bp
MHASPSHTRQAEEEEEKELLLLDTPDSSSFSTPGHVTHHRRRGPSGTCAT
LPSAPSPAPPSQRGRTGSSANSWLGRMRRRGLRCLWGCGARLVRVPTLAE
KWGGLTLFGVLVGNPQIAAGLLLLLYAIVLVFWLPLYFLSQLLTPLGVLA
ALAGACLAIGRY
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mRNA from alignment at CM002460.1:1134602..1135642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3256 ID=rna3256|Name=rna3256|organism=Nannochloropsis gaditana|type=mRNA|length=1041bp|location=Sequence derived from alignment at CM002460.1:1134602..1135642- (Nannochloropsis gaditana)
GTAGTTCATAGAGACGTACCATCGAGCGACCCTCCTCTCCTTGTTCTCCC
CCTCCGGTGACCTGATGCCTGCGTGCCTCATCATTAACCCCTGTGACACC
GTCACCAATTTCTGGGTGAAAAAATACGTGCAGAGCCTGAGGTATGGGAA
AGCATGCTGTTTGTGTGCAAAGTCCCGACTCAGAAATGAATCGCGCATAG
AAGTGGCACTTGTCCATCGTCCGCCTTCAGGCAATTCACTCCACACCGAT
TCTTTTTTCACTTTTCCTAGCTTTTGGACACCGTTCAGGCTTCAAATTTC
CATCAACTTGCATTGATGCCCAACATGGTCTGAAAGCTTCAAGATTCCCT
CCCAACACGCCACCCGAACGCCCCCGCCATGCACGCTTCCCCTTCCCACA
CTCGTCAAGCCGAGGAGGAGGAGGAAAAGGAGCTTCTCCTCCTTGACACG
CCTGACTCCTCCTCCTTCTCCACTCCGGGCCATGTCACCCATCACCGGAG
ACGAGGCCCCTCGGGCACTTGCGCCACCCTCCCGTCTGCGCCTTCGCCTG
CCCCGCCCTCCCAGCGAGGCCGGACAGGATCATCTGCCAACAGCTGGCTC
GGTCGAATGCGGCGGCGCGGGCTTCGATGTCTGTGGGGCTGTGGTGCCCG
ACTCGTTCGTGTCCCCACCCTGGCGGAGAAGTGGGGCGGCCTCACGCTTT
TCGGCGTCCTGGTGGGGAACCCGCAGGTGACGAGAGTGGTGATGGATGTG
GAAGGAGGAGGAGGGAGGGGTGAGGGCGGAACATAACGAGCCGCTCCTTC
TCCTCCACTTTCTCTTTTTCATCATCCTATGTGCCAGCTTATACACACCT
CCTCTCTTCATCCTCCTCCTTTCCCCTCCCTCCCCCTCCCCCTCCCTCCT
CAGATCGCGGCCGGCCTCCTCCTCCTCCTGTACGCCATCGTCCTCGTATT
CTGGCTCCCGCTTTACTTCCTCTCCCAGCTCTTGACCCCTCTCGGCGTCC
TCGCTGCCTTGGCCGGGGCGTGTCTGGCGATAGGCCGTTAC
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Coding sequence (CDS) from alignment at CM002460.1:1134602..1135642-

>rna3256 ID=rna3256|Name=rna3256|organism=Nannochloropsis gaditana|type=CDS|length=972bp|location=Sequence derived from alignment at CM002460.1:1134602..1135642- (Nannochloropsis gaditana)
ATCGCGGCCGGCCTCCTCCTCCTCCTGTACGCCATCGTCCTCGTATTCTG
GCTCCCGCTTTACTTCCTCTCCCAGCTCTTGACCCCTCTCGGCGTCCTCG
CTGCCTTGGCCGGGGCGTGTCTGGCGATAGGCCGTTACATGCACGCTTCC
CCTTCCCACACTCGTCAAGCCGAGGAGGAGGAGGAAAAGGAGCTTCTCCT
CCTTGACACGCCTGACTCCTCCTCCTTCTCCACTCCGGGCCATGTCACCC
ATCACCGGAGACGAGGCCCCTCGGGCACTTGCGCCACCCTCCCGTCTGCG
CCTTCGCCTGCCCCGCCCTCCCAGCGAGGCCGGACAGGATCATCTGCCAA
CAGCTGGCTCGGTCGAATGCGGCGGCGCGGGCTTCGATGTCTGTGGGGCT
GTGGTGCCCGACTCGTTCGTGTCCCCACCCTGGCGGAGAAGTGGGGCGGC
CTCACGCTTTTCGGCGTCCTGGTGGGGAACCCGCAGATCGCGGCCGGCCT
CCTCCTCCTCCTGTACGCCATCGTCCTCGTATTCTGGCTCCCGCTTTACT
TCCTCTCCCAGCTCTTGACCCCTCTCGGCGTCCTCGCTGCCTTGGCCGGG
GCGTGTCTGGCGATAGGCCGTTACATGCACGCTTCCCCTTCCCACACTCG
TCAAGCCGAGGAGGAGGAGGAAAAGGAGCTTCTCCTCCTTGACACGCCTG
ACTCCTCCTCCTTCTCCACTCCGGGCCATGTCACCCATCACCGGAGACGA
GGCCCCTCGGGCACTTGCGCCACCCTCCCGTCTGCGCCTTCGCCTGCCCC
GCCCTCCCAGCGAGGCCGGACAGGATCATCTGCCAACAGCTGGCTCGGTC
GAATGCGGCGGCGCGGGCTTCGATGTCTGTGGGGCTGTGGTGCCCGACTC
GTTCGTGTCCCCACCCTGGCGGAGAAGTGGGGCGGCCTCACGCTTTTCGG
CGTCCTGGTGGGGAACCCGCAG
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Synonyms
Publications