rna3254, rna3254 (mRNA) Nannochloropsis gaditana

Overview
Namerna3254
Unique Namerna3254
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1068
Alignment locationCM002460.1:1129916..1130671 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101125g1.4761.mrna
Orig protein idgnl|cribi|Naga_101125g1.4761
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1129916..1130671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101125g1gene3133Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27428.1cds3245Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3254rna3254-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3254 ID=rna3254|Name=rna3254|organism=Nannochloropsis gaditana|type=mRNA|length=1068bp
CTAGGCGTTGAAAAAGCACGTTGTGGAAGTATCGGAGGGTGGGAGACTTC
CTCGCGGTTGCTGAGTACAGCGTCACTATTTTTTTCGGAGCTTGAATGGG
TCGGTACACGTCATTTGATGGTTCAATGTGACAGCTTTACTGTTTGATAA
ACAGGACGTCCGCAAGAGGAAGCTCGAGATCTTCAAGTGCATGTCCCCCC
CCGTGCCGTCCATGTGTTTTATGCATCTTCTTTGTTTCACCGTGAAGCCC
TCTCATCTTTGAAAAGCAGGCACACAATCATGAAGCTTTTTCTTGCATTG
ACCACGGCCGCGGCCTCGATATCGCTTGGTGAGTCAAGGAAGGGGACAAG
GTGGAACCATGGAAAGGAGGCTCGAGCAGATCATGCGGGAGCGTGAGGAT
TGCTGGCGGGCTGTGAATTCGATAAAGACGGACTTGACAACGCAAACCCT
GCTAAAGAAGTGCATGGCTTGTGCATATGCCCGACAATTGGTCCCGTGTC
CTGTGTGTCATTTCACATCCCCGGGTGGACGAGTTGCCCTTCGTCCTGCG
TCGTGTACAGGCACCTCGCTCTCTGACACACATATACCTTCCGTGAAATG
CATGCTCCCCCCACCCGATTTTATATCCGCCCACATTTATCCCATTCCTC
ACATGCATACGTTGGCTCCCTTCCTCTTCCCCTTCCTTTGCAATTATCTC
CTCCAGCCTCCGCTTTCCTCCCCCTGGCCCCACGCCCGAGCCTTCGAGTC
AGCCGCACCTCCCTCGCTGCGTGGACCCCAGACCGGGCCCCGGCAACCAA
TCCAGGACGCAGCGGATTGTCGGCAGACGCTTCCTTCGACCGGGCGGGCG
TGCGTGCGGAGGTGGACTACATGGACAACGACCAGCAGAACCCTCCCTCC
CAAACAAAGTGGTGGGAAGCCTACTACCCTTCCCAAGAGGAGCAGGAGGC
AGCGGCAGCCGGCTTTGATTTCTCGAACCCAGAGGCCTGGCTGGCGCAAG
CCAAGGAGGGCACGAATGTGAAGATGGAGGATCCGTCATTCGAGGCGACG
GAGGGCTTCACGTCGGCA
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protein sequence of rna3254

>rna3254-protein ID=rna3254-protein|Name=rna3254|organism=Nannochloropsis gaditana|type=polypeptide|length=214bp
WGKGEKGVLYLFLCPCDHLCLAYPPLGRPVNPPAPVPISSRRLIRNISLL
LCLCVNALRCSPLFILFLPSLPPPSFPSFPPPPLSFSLGHAPPSFPCSQQ
CRQALDSLVARFYSDAVEARETPEVKYCASMLQYLDARLERAGDAAQRRE
EEKLARVAAGEEGGGLREGGDWKGSVGHLLGLMCGHNASFSEEERARLMY
HLSRGWTVESFAGP
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mRNA from alignment at CM002460.1:1129916..1130671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3254 ID=rna3254|Name=rna3254|organism=Nannochloropsis gaditana|type=mRNA|length=756bp|location=Sequence derived from alignment at CM002460.1:1129916..1130671- (Nannochloropsis gaditana)
GTGGGGGAAGGGGGAAAAGGGTGTCCTCTACCTCTTTCTCTGCCCTTGCG
ATCATCTTTGCCTCGCGTACCCTCCCTTGGGACGGCCTGTAAACCCACCG
GCCCCGGTTCCGATCTCTTCCCGGCGACTTATCCGCAACATTTCTCTCCT
TCTATGTTTATGTGTCAACGCTCTCCGTTGCAGCCCTTTGTTCATCCTTT
TCCTCCCCTCCCTCCCCCCCCCCTCCTTTCCTTCTTTCCCTCCACCGCCC
CTCTCTTTCTCCTTGGGCCACGCTCCTCCATCCTTCCCCTGTTCCCAGCA
ATGCCGACAAGCCCTGGACAGCCTCGTCGCCAGATTTTACTCCGATGCCG
TGGAGGCACGAGAAACGCCCGAAGTGAAGTACTGCGCGAGCATGCTGCAA
TATCTCGACGCGCGCCTGGAACGGGCAGGGGACGCTGCCCAGCGGCGGGA
AGAAGAAAAGTTGGCGCGTGTGGCCGCGGGAGAGGAAGGAGGGGGACTCA
GGGAAGGAGGAGACTGGAAGGGGAGTGTGGGTCACCTTTTGGGGCTTATG
TGCGGTCATAATGCGTCGTTCTCGGAAGAAGAGAGGGCAAGGTTGATGTA
TCACCTGTCACGGGGGTGGACAGTCGAGTCCTTTGCCGGCCCCTGAGAAA
AAAGTAGAAGCTTGCGAGGCAAAGGGTCATGACTGAGATACTCCAGCAAT
ATCGGCATGTAAAACATAATTATGCCGCCTCCTGGTCGGTTCCGTTACCG
CTTTGG
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Coding sequence (CDS) from alignment at CM002460.1:1129916..1130671-

>rna3254 ID=rna3254|Name=rna3254|organism=Nannochloropsis gaditana|type=CDS|length=645bp|location=Sequence derived from alignment at CM002460.1:1129916..1130671- (Nannochloropsis gaditana)
TGGGGGAAGGGGGAAAAGGGTGTCCTCTACCTCTTTCTCTGCCCTTGCGA
TCATCTTTGCCTCGCGTACCCTCCCTTGGGACGGCCTGTAAACCCACCGG
CCCCGGTTCCGATCTCTTCCCGGCGACTTATCCGCAACATTTCTCTCCTT
CTATGTTTATGTGTCAACGCTCTCCGTTGCAGCCCTTTGTTCATCCTTTT
CCTCCCCTCCCTCCCCCCCCCCTCCTTTCCTTCTTTCCCTCCACCGCCCC
TCTCTTTCTCCTTGGGCCACGCTCCTCCATCCTTCCCCTGTTCCCAGCAA
TGCCGACAAGCCCTGGACAGCCTCGTCGCCAGATTTTACTCCGATGCCGT
GGAGGCACGAGAAACGCCCGAAGTGAAGTACTGCGCGAGCATGCTGCAAT
ATCTCGACGCGCGCCTGGAACGGGCAGGGGACGCTGCCCAGCGGCGGGAA
GAAGAAAAGTTGGCGCGTGTGGCCGCGGGAGAGGAAGGAGGGGGACTCAG
GGAAGGAGGAGACTGGAAGGGGAGTGTGGGTCACCTTTTGGGGCTTATGT
GCGGTCATAATGCGTCGTTCTCGGAAGAAGAGAGGGCAAGGTTGATGTAT
CACCTGTCACGGGGGTGGACAGTCGAGTCCTTTGCCGGCCCCTGA
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Synonyms
Publications