rna3251, rna3251 (mRNA) Nannochloropsis gaditana

Overview
Namerna3251
Unique Namerna3251
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length369
Alignment locationCM002460.1:1121643..1122140 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_103279g1.5343.mrna
Orig protein idgnl|cribi|Naga_103279g1.5343
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1121643..1122140 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_103279g1gene3129Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27431.1cds3242Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3251rna3251-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3251 ID=rna3251|Name=rna3251|organism=Nannochloropsis gaditana|type=mRNA|length=369bp
ATGGGCCGAGGCCGGGCGGGGAGGGCGATTGGATGGCAGCGTCATGCCTG
TACAAAGCAAGAAGGCGTTAGCGACGGCGGAGGCCAGGGGCGAGGGATAG
GCCCGGGAGATGCGGATTTTGAAATGGCAGCGTTGTTGTGCAATATATAT
ATATACATATTAGGTGGAGACAGATCGGAGAGGAAGAAACACGAGGGGAG
CGCGGCCTCGACGTCTTCGTTGCTACGGGCGCACGAGAAGGGTGGGTCCT
CAGGGATCACGGATAGGCGCATGGCATTGCCTTGGAAAGGCGGAGAGGTC
CACGCGTACAGTCATTGTCTTTTAAGCTTTTTAAGAAGGGTAGGATGGTC
CCTTGACAGTCAGTTATGA
back to top

protein sequence of rna3251

>rna3251-protein ID=rna3251-protein|Name=rna3251|organism=Nannochloropsis gaditana|type=polypeptide|length=74bp
MLLLCRALQEEEASGAVHAKKCLLKSEVLPQAPSLVGTKRGRPVARALLA
LHCFLLHFLPFLLPGRSLSTRSRA
back to top

mRNA from alignment at CM002460.1:1121643..1122140-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3251 ID=rna3251|Name=rna3251|organism=Nannochloropsis gaditana|type=mRNA|length=498bp|location=Sequence derived from alignment at CM002460.1:1121643..1122140- (Nannochloropsis gaditana)
CCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCACCTCCTCCTCTTCCTCC
TCCTCCTCCTCCTCCCCTGCCTCCTCCTCCTCTTCCACTTCCTCCTCCAC
CTCCTCCACCTCCTCTTCCTCCCCCCTACTCTCTCCTCCCTTTGCCCTCT
CCTCCCTCCCTCCCTGCGCAAGCCCCTCCTTGGCTTTGGAGGAAGCCTAC
GCTCGCTCCCCCTTCCCCCCCGCCCCCACCTCGCACGACATGCTCCTTCT
CTGCCGCGCTTTACAGGAGGAAGAGGCGAGCGGGGCAGTGCACGCAAAAA
AATGCCTCCTTAAGTCCGAGGTTCTCCCGCAGGCCCCCAGCCTTGTCGGA
ACAAAAAGAGGGCGGCCGGTGGCACGTGCTCTCCTTGCTCTCCACTGCTT
CCTCCTTCACTTCCTCCCCTTCCTCCTCCCGGGTCGCTCCCTCTCAACCA
GAAGCCGTGCATGAGTCAGAAAACGGGGGCCAGGGCGGGAAAGAGGGC
back to top

Coding sequence (CDS) from alignment at CM002460.1:1121643..1122140-

>rna3251 ID=rna3251|Name=rna3251|organism=Nannochloropsis gaditana|type=CDS|length=225bp|location=Sequence derived from alignment at CM002460.1:1121643..1122140- (Nannochloropsis gaditana)
ATGCTCCTTCTCTGCCGCGCTTTACAGGAGGAAGAGGCGAGCGGGGCAGT
GCACGCAAAAAAATGCCTCCTTAAGTCCGAGGTTCTCCCGCAGGCCCCCA
GCCTTGTCGGAACAAAAAGAGGGCGGCCGGTGGCACGTGCTCTCCTTGCT
CTCCACTGCTTCCTCCTTCACTTCCTCCCCTTCCTCCTCCCGGGTCGCTC
CCTCTCAACCAGAAGCCGTGCATGA
back to top
Synonyms
Publications