rna3250, rna3250 (mRNA) Nannochloropsis gaditana

Overview
Namerna3250
Unique Namerna3250
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1412
Alignment locationCM002460.1:1119831..1120312 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101109g2.2596.mrna
Orig protein idgnl|cribi|Naga_101109g2.2596
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1119831..1120312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101109g2gene3128Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3250rna3250-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27433.1cds3241Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3250 ID=rna3250|Name=rna3250|organism=Nannochloropsis gaditana|type=mRNA|length=1412bp
CCTGGAAAGCCTTCCAATCAGACCAGCAGCGTGGAAAGCCCTGGTCCAAA
TGGCACACCAGGGCCTTCCTTCCGTAGCGCCGGCGTTTGTGGTAAAATTA
GGCATTGCACCGATGTATGCCCGCATTCGTTGAAGTAATGAATGTGGAAA
ATGTCTAGGACGTGTTATAGCACCAGACCATACATGGTATGTACGCATCA
CAGGACGTCACGTGCTACAATTGATCCTGTCAGCCCCCTGAATATGCCCC
CAAATGCCAAACCTGACAGATGCAACGACGTTTGTTGATGGGTACATAGA
CTTTAAACGCAGCCACTATGCCAGATGCCCAGTATTTGCGTCATGTACAC
TTGTGTGGATGACACGCCAGCACAACTTCGTTTTCATACACTCAACTCTG
TATGCAGCGAGCACCGAGGCGGTTGCCATTTCCTGCGTTTTCCGTTTTTC
CCCAACGAAACATCCGTCTCTGCCCTTTGAAATATTTATCCCTTACAAAA
AATTGTCCTGGTTGTGAGCGCTTTCGCTGCTCGCTTTCGTTTTCCCAGCC
CTCGGGAGCCTTGAGTGTTAAAAAGTTCAACGCAACTTCCAGGTGTGGCA
TTATTTATAATTTTCGTCCTCTAAGGTACCGCGCTGAAGCCAGACAGCGC
GAGGCGGAGAGAGATGCGGAAAGGCGTCTGCAAAGGCACATCCGAGCTTC
GCTCCGACGGAAAGCCAACGCGTGGAAAAGTAAGAGGTGGTCCAGTCCCT
TCTGCACCGAGCGCTGTGCCTGTAGCCGTGTCGCGCCCGTACCACTACGC
GACCCGGAGTCTCTGCCCCCTCCCAGACCATCCCCCCAGCCCCATCCGAG
GCCGCGTCCGTCGAGTTTCCTCGGAACCACAAGCACGACGAGGGGATACA
GGTGATCCCACCCATGGCGCAGACGGCGTTCCCGCGAAAGTCCCGCGCGC
ATGCCCCCGTCCACGGCGACGGAGGAAAGACACGGGGGCCTCGCCGCTTC
GAAGGGAGACGACTCCTTGCCTGGTCCCTCCCTCCCTCCCTCCCGTCTTC
ACCCCACCCGATTTCTCAGGGAGGGACAAAGGTTGCACTTGCACCGTTGT
GCCGCGGCCGCAGTCCCCGCCCCACACCCCTCCGGTGCCGCCGAGTGAGG
CGCTCCATGCCTCTGCCCCCGCGCGACGGGAACGGCTGGGAGGGAGCGGC
TCCCAGTGCGGAAGCGAGGTCACCACGGAGACCGAAAAATGCCGAGAGGG
GGTCGGAGCTACCCTTGAGGAGCATACGGACTCACACGAGCTGGCAACGA
CCAGTTCCTTTCCCGAGGCGTCGCGCTCCTTCCTCTTCGCCTTCCCTCCC
TCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTC
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protein sequence of rna3250

>rna3250-protein ID=rna3250-protein|Name=rna3250|organism=Nannochloropsis gaditana|type=polypeptide|length=122bp
MGRGRAGRAIGWQRHACTKQEGVSDGGGQGRGIGPGDADFEMAALLCNIY
IYILGGDRSERKKHEGSAASTSSLLRAHEKGGSSGITDRRMALPWKGGEV
HAYSHCLLSFLRRVGWSLDSQL
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mRNA from alignment at CM002460.1:1119831..1120312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3250 ID=rna3250|Name=rna3250|organism=Nannochloropsis gaditana|type=mRNA|length=482bp|location=Sequence derived from alignment at CM002460.1:1119831..1120312- (Nannochloropsis gaditana)
ATGGGCCGAGGCCGGGCGGGGAGGGCGATTGGATGGCAGCGTCATGCCTG
TACAAAGCAAGAAGGCGTTAGCGACGGCGGAGGCCAGGGGCGAGGGATAG
GCCCGGGAGATGCGGATTTTGAAATGGCAGCGTTGTTGTGCAATATATAT
ATATACATATTAGGTGGAGACAGATCGGAGAGGAAGAAACACGAGGGGAG
CGCGGCCTCGACGTCTTCGTTGCTACGGGCGCAGTAGTCGTGGAGGAGGA
CGGGTGGGCGCAGACGAGGAGAAGGGAGGGCTGATAGCGACGCGAGCAGC
CGTCGCGGATCGAGGGGAATCAGGAGATGGATGGGGAAGGTGACAGCGAG
AAGGGTGGGTCCTCAGGGATCACGGATAGGCGCATGGCATTGCCTTGGAA
AGGCGGAGAGGTCCACGCGTACAGTCATTGTCTTTTAAGCTTTTTAAGAA
GGGTAGGATGGTCCCTTGACAGTCAGTTATGA
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Coding sequence (CDS) from alignment at CM002460.1:1119831..1120312-

>rna3250 ID=rna3250|Name=rna3250|organism=Nannochloropsis gaditana|type=CDS|length=738bp|location=Sequence derived from alignment at CM002460.1:1119831..1120312- (Nannochloropsis gaditana)
CGAGAAGGGTGGGTCCTCAGGGATCACGGATAGGCGCATGGCATTGCCTT
GGAAAGGCGGAGAGGTCCACGCGTACAGTCATTGTCTTTTAAGCTTTTTA
AGAAGGGTAGGATGGTCCCTTGACAGTCAGTTATGAATGGGCCGAGGCCG
GGCGGGGAGGGCGATTGGATGGCAGCGTCATGCCTGTACAAAGCAAGAAG
GCGTTAGCGACGGCGGAGGCCAGGGGCGAGGGATAGGCCCGGGAGATGCG
GATTTTGAAATGGCAGCGTTGTTGTGCAATATATATATATACATATTAGG
TGGAGACAGATCGGAGAGGAAGAAACACGAGGGGAGCGCGGCCTCGACGT
CTTCGTTGCTACGGGCGCACGAGAAGGGTGGGTCCTCAGGGATCACGGAT
AGGCGCATGGCATTGCCTTGGAAAGGCGGAGAGGTCCACGCGTACAGTCA
TTGTCTTTTAAGCTTTTTAAGAAGGGTAGGATGGTCCCTTGACAGTCAGT
TATGAATGGGCCGAGGCCGGGCGGGGAGGGCGATTGGATGGCAGCGTCAT
GCCTGTACAAAGCAAGAAGGCGTTAGCGACGGCGGAGGCCAGGGGCGAGG
GATAGGCCCGGGAGATGCGGATTTTGAAATGGCAGCGTTGTTGTGCAATA
TATATATATACATATTAGGTGGAGACAGATCGGAGAGGAAGAAACACGAG
GGGAGCGCGGCCTCGACGTCTTCGTTGCTACGGGCGCA
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Synonyms
Publications