rna325, rna325 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna325
Unique Name	rna325
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1119
Alignment location	CM002455.1:804967..809247 +

Link to JBrowse

Properties


Property Name	Value
Product	p-type atpase
Orig transcript id	gnl\|cribi\|Naga_100003g171.1727.mrna
Orig protein id	gnl\|cribi\|Naga_100003g171.1727
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:804967..809247 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g171	gene314	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna325	rna325-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30210.1	cds325	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:804967..809247+
coding sequence from alignment at CM002455.1:804967..809247+

mRNA sequence

>rna325 ID=rna325|Name=rna325|organism=Nannochloropsis gaditana|type=mRNA|length=1119bp
CCCCTCGCCAAGCCCCCGGGCCTTGGCATGTTTCTCGGCGAGCCAGTAAG
CTGGGTCACCTGGACACGAAATACTTACGTAACTCACGCCAGACAACCCG
CTGGTACACAAGATCTTGCTAGCTCCTTGTCGTCCCCGCCATGGCAGCAT
CGAGCCCTCACTCAAAATCCAGACTACGGGGGAAACAGTCGTCACGGTCG
CCACCAGAGCTTTCCATCTTGTTGCCTACCTACAACGAACGGGAAAATCT
GCCATTAATGCTGTGGCTTATAGATAGGCACATGACTGAAAGTCACATCT
CATATGAAGTCATCATAATCGAAGACAACAGTCCTGACAACACTCTCCAA
GTCGCGGAGAAACTGCAGGAATTGTATGGTCCACAGGTCATCCAAATCCA
TCAGCGACCGGGTAAGCTTGGCCTTGGTAGCGCATACGTTGACGGACTTG
CTTTGGCGCGGGCAGATCGGGTGGTTCTGATGGACGCAGACCTCTCGCAC
CACCCCAAGTTCATTCCGGAGCTGTTCAGGAAGCAGCAAGAGGGTGACTT
TGACGTCGTCACAGGGACGCGGTACGCCATGGGGGGAGGCGTCAGCGGAT
GGGACCTTCGGCGAAAGCTCATAAGCCGTGGAGCCAACTTTCTCGCTGCT
TTTCTGCTCCAGCCCGGTGTCTCAGATTTGACGGGCTCCTTTCGTTTGTA
TCGCAAGTCCGCATTAGCCGCGGTTATGGGCAGGGTGCGATCTAAGGGCT
ATGTCTTTCAAATGGAAGTAATCGTCAGAGCTAGGCAGCTGGGGTTGCGG
ATTGCGGAGGTTCCAATAACCTTTGTTGACAGAATATATGGGGAAAGCAA
GCTGGGGGCTGGGGAGATCGTTGCTTATCTTCGTGGATTGGGGCAACTTT
TCTTGTCCATATAGGCGCACAAAATGTGCAGGGCGTTAAAAGATCGGCAA
ACCCAAACATAGGCGAATTAATGTCTTGGAGAAGCAAAGCATGGGACGCA
AGATGACTAGCGTATGTTTTTTAACTTCCTGTTTTTTTCATCAACCTCCC
GCATCTCCGCGCGAAACGCCTACTTCTTTGAAGGTAACGACACATTTCCG
TGAAGAAACTCCTCGCTCC

protein sequence of rna325

>rna325-protein ID=rna325-protein|Name=rna325|organism=Nannochloropsis gaditana|type=polypeptide|length=1137bp
MPFPSSGLLKVAAAGGEESMQHVRQRSLGSSKGSSFNDHSITPAVLDQLN
VAQEAESNKTALDALGGLSGLAKELEVDLKHGLKDRQVSELRARFGANSF
PEAPIASWLELFVNALKDPIIVVLIFACIISLVVGLIEDPHDGWIEGTAI
MVAIMIVATVTASNNYNKELQFRSLEATSKKDERVFIKRSGALHFVNPEE
IVVGDLIKLKAGDGIPADGILVDGDGVKVNESSLTGEPEDLLKKVDKDPF
LLSSSLLTDQGSSPEIFIFVIAVGPRSQWGKIRANLVQDSTPTPLQEKLE
HAATVIGKVGTFVSVATFLALVVMIFKPPGQPARHPDGQKITSELINAFI
IAVTIIVVAIPEGLPLAVTISLAYSTRKMYKDQNLIRVLAACETMGNATN
ICSDKTGTLTENRMTVVELWAGGQVYMDMKAAGSELKPKLKSMISINVAV
NSSANVLFKAEDGTVLARPKIVGSATEGALLLMIHAWGLHFTHLKDRHFH
KATDRVFPFNSGKKRATALIHKKNGGLRVLVKGATEWVLNDCTAYTLSDG
ATMPMTPEVRAQIDAHVLSMANRALRTLCIAHRDFPPGEALPADWEDVPP
DHENLVCDGIVGIIDPLREDVKDAVKTAQKAGVMVRMITGDNIHTAQAIA
RDCGILTPGGLAIEGPVFRNLTPAQLDELLPRIQVMARSSPEDKYLMVTR
LNGANLPKDKASWEEKHPGRDWEEEKDLLLPGYYQEWNASRGSDGGHVVG
VTGDGTNDAPALKAADVGLSMGITGTQVAKNASDIVILDDKFSSIVKAIM
WGRAVYDNIRKFLQYQMTVNLAALILTFFGAVTGMGTPLNAVMMLWINLI
MDTMGALALGTEEPTAALLNRRPYKRSANLFSRLMVRNVVGQVVFQLGIL
FFVLYRGPSLWGVEDGNYCRSWTAASSRTDVTWEFNGVGYTCADFQLVCA
EYFGGQSTGECYSEMLKYWTTPSRFESTCDLRCDAFDFTHYTFIFTSFVM
CQAFNEFNARELFNNYNVFRGLTRNPIFLVILTVIVCLQIIIVEFGGKFV
RTTPLPLELWAWSFLFGFLSLPVGLLLKICIPLKESPETFFGYLLPDKNE
PLPPELSKLVISSEDTTDADMSDVSPPIARVHNDTHV

mRNA from alignment at CM002455.1:804967..809247+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna325 ID=rna325|Name=rna325|organism=Nannochloropsis gaditana|type=mRNA|length=4281bp|location=Sequence derived from alignment at CM002455.1:804967..809247+ (Nannochloropsis gaditana)
TCTCCGGCACATATTTTTTCAGGCGAGGGTTTGGCAAAGAATCTGCGTTG
TACCTCAATTTCACTCATGTTCTTGAGGTCGAGGGTGTGGCTCGAAGGAA
TTATGCATATGTCACCGCACCCAAACCTGATCCTGACGCGCAAATTACAC
AGGACCGTAAAGGATCAAGCGAAAATGCAAGCAGTGTAGCAAAAGAGGGG
GACCGTGGAAAACATTTTCGGAAGGCGTGTTCAATTTTCCCTGGGGCGGC
ACGAACCGACCTGCACGGGTGAAGCAGCTCTTTGGTGTGGGTGCTAATCT
CATGTACGTACGGGACAGCAAACTTGGATTCTGCCTTAGCATAAAGATGC
GTGAGACAACAGCATCGATAGATTTTTAACATGCGACATGTGTACGATCG
GATTGAGCCTTCATAATGACATGCAGATGTGCTTGTGCGTTATGCAATTT
GCCTCTGATACAAGAAACCTATCTCATGTCACAGAtgccatttccctcct
cggGCCTCCTGAAAGTGGCAGCCgcaggcggagaagaaagcatgCAGCAC
GTTCGCCAGCGAAGCCTGGGTAGCAGCAAAGGAAGCAGCTTCAACGATCA
CAGTATCACCCCTGCGGTCTTAGACCAGTTGAATGTGGCTCAGGAGGCCG
AGTCCAACAAGACAGCTTTGGACGCGTTGGGAGGCCTGTCAGGCCTTGCC
AAGGAACTAGAAGTGGATCTGAAGCATGGACTTAAGGACCGCCAAGTTTC
AGAGCTGCGGGCGCGCTTTGGAGCGAATTCCTTCCCCGAAGCCCCTATAG
CGTCATGGCTGGAGTTGTTTGTGAATGCCCTTAAGGATCCGATCATCGTC
GTTCTCATTTTCGCTTGTATCATCTCTTTGGTGGTAGGACTCATCGAAGA
CCCTCACGACGGGTGGATAGAGGGGACGGCCATCATGGTCGCTATCATGA
TAGTCGCCACAGTCACTGCCTCTAACAACTACAACAAAGAGCTACAGTTT
CGGAGCCTGGAAGCCACATCCAAGAAAGACGAGCGGGTTTTTATCAAACG
CAGCGGGGCGCTCCACTTCGTGAATCCAGAAGAGATCGTGGTGGGGGACC
TGATCAAGCTGAAGGCCGGGGACGGCATTCCCGCTGACGGCATACTGGTG
GATGGCGACGGCGTCAAGGTCAATGAGTCATCCCTAACAGGCGAGCCTGA
AGACCTTCTGAAAAAGGTGGACAAGGATCCCtttctgctttcctcctcgc
tcctcaCAGATCAAGGCAGCAGCCCCGAGATATTTATATTCGTCATTGCT
GTTGGCCCCAGATCGCAGTGGGGAAAGATCCGAGCCAACCTTGTGCAAGA
CTCCACGCCAACACCCTTGCAGGAAAAGCTGGAGCATGCTGCTACCGTCA
TCGGCAAGGTAGGGACGTTCGTTTCGGTCGCCACTTTCCTGGCGCTTGTG
GTGATGATCTTCAAGCCGCCTGGGCAGCCCGCACGGCACCCTGATGGGCA
GAAGATCACGTCTGAGCTCATTAACGCCTTCATCATCGCCGTCACAATCA
TCGTGGTGGCCATACCCGAGGGCCTACCCTTGGCAGTTACCATATCCTTG
GCATACTCGACCAGGAAGATGTACAAAGACCAAAATCTCATCCGCGTCTT
GGCGGCGTGCGAGACGATGGGCAACGCCACGAACATATGTTCCGACAAAA
CCGGGACTCTCACGGAGAATCGCATGACGGTGGTTGAGCTTTGGGCGGGC
GGACAAGTGTATATGGACATGAAGGCTGCGGGCAGCGAATTGAAGCCGAA
GCTGAAGAGCATGATTTCGATCAACGTGGCGGTTAACTCCTCCGCAAATG
TGCTTTTTAAGGCCGAGGATGGCACGGTTCTTGCCCGCCCTAAGATCGTG
GGAAGCGCCACAGAGGGTGCTCTGCTGCTTATGATACATGCTTGGGGCTT
GCATTTCACGCATCTGAAAGACCGCCACTTCCATAAGGCGACAGATCGGG
TCTTCCCTTTCAAttcggggaagaagcgggccACAGCGTTGATACATAAA
AAAAATGGGGGATTGCGCGTGCTAGTAAAGGGTGCCACGGAGTGGGTGCT
TAATGACTGCACGGCGTACACTTTGTCTGACGGCGCTACCATGCCGATGA
CTCCTGAAGTTCGCGCACAGATTGACGCCCACGTCCTTTCTATGGCCAAC
CGGGCTCTCCGGACACTTTGCATCGCACACCGAGATTTTCCACCGGGGGA
AGCACTGCCGGCGGACTGGGAGGATGTGCCGCCTGACCATGAAAACCTGG
TCTGTGACGGCATCGTGGGCATCATCGACCCTCTGCGGGAGGATGTCAAA
GACGCTGTGAAGACGGCGCAGAAGGCAGGGGTGATGGTGCGAATGATAAC
AGGAGACAACATCCATACAGCCCAGGCCATTGCGCGGGATTGTGGGATTT
TGACGCCAGGAGGCCTGGCGATTGAGGGTCCTGTCTTTCGTAATTTAACT
CCAGCGCAACTCGACGAGCTTCTGCCCCGGATTCAAGTCATGGCCCGGTC
GTCGCCCGAGGACAAGTATCTGATGGTGACGCGCTTGAACGGGGCAAACC
TCCCCAAGGACAAAGCCTCGTGGGAAGAGAAGCACCCAGGTcgggactgg
gaggaggagaaagacctGCTTCTCCCCGGGTACTACCAGGAGTGGAACGC
ATCGCGCGGCAGCGACGGGGGCCACGTTGTGGGCGTGACGGGGGATGGGA
CCAATGATGCCCCGGCACTCAAAGCGGCGGATGTGGGTCTGAGCATGGGC
ATCACGGGCACGCAAGTGGCCAAGAACGCCTCAGACATTGTTATATTGGA
CGACAAATTCTCTTCCATCGTCAAGGCCATCATGTGGGGTCGCGCTGTCT
ACGACAACATCCGCAAGTTTTTGCAGTATCAAATGACAGTCAATTTGGCG
GCGCTCATCCTCACCTTCTTTGGTGCCGTGACGGGAATGGGCACGCCGCT
TAATGCAGTTATGATGCTGTGGATCAACCTGATCATGGACACGATGGGCG
CGCTGGCTCTAGGGACGGAGGAGCCGACTGCGGCGCTATTGAATCGTCGG
CCGTACAAGCGCTCAGCCAACTTGTTCTCGCGACTAATGGTGCGAAACGT
CGTCGGTCAGGTCGTCTTTCAGCTCGGAATACTCTTCTTTGTGCTTTACC
GGGGCCCTTCGCTTTGGGGAGTAGAGGACGGCAATTATTGCAGGTCGTGG
ACTGCCGCCAGCAGTCGCACGGACGTGACCTGGGAGTTCAATGGCGTAGG
GTACACTTGCGCGGACTTCCAGTTAGTCTGCGCCGAGTACTTTGGGGGGC
AGTCGACGGGCGAGTGCTACAGTGAGATGCTTAAATATTGGACAACTCCC
TCCAGGTTTGAGTCTACTTGCGACCTGCGCTGCGACGCCTTCGACTTCAC
GCACTACACCTTCATCTTCACGTCTTTCGTCATGTGCCAGGCCTTCAACG
AGTTCAATGCGCGTGAACTCTTCAATAACTACAACGTTTTCAGGGGCCTT
ACCCGCAACCCTATATTTCTGGTCATCCTAACCGTGATCGTTTGCCTTCA
AATTATAATCGTTGAGTTCGGCGGGAAGTTTGTGAGGACCACACCTTTGC
CCCTTGAGCTGTGGGCCTGGTCCTTTCTATTCGGATTCCTCTCGCTCCCC
GTCGGTCTCTTGCTAAAAATTTGTATCCCCCTTAAGGAGTCGCCTGAGAC
TTTCTTCGGCTACTTGTTGCCGGACAAGAACGAACCCCTGCCGCCGGAGC
TATCGAAGCTGGTCATAAGCTCTGAGGACACGACCGACGCCGACATGAGC
GATGTCTCCCCCCCTATCGCTCGTGTGCACAACGACACCCATGTATGAGG
TTCACATGCCTGGATTAAAGCTCACTTGAGATAGTGAAATGGGGGTGGAA
GTCTTCGTTCTCGGCcgccacgggagggagacggaccgGGTATTCTGTGC
ATATGGGCGTGCACCAAATCACCACGTTCAAACGCCAGGTGGAGCTTTCC
GCCTGCGCTCAATCATCTGTCTCCGTTTTTCTTTGTGGTGGTGCTCAATG
GTGGAGAGCGAATAGTTTGTGAGGTGGACAAGTTGAGAGGCGCAAGGGAG
TGGGGAGACCACGGCGGTGAGACTGTGCTCGTCTGAGATCGGTAAAGCGT
TTTTCGGCTGATAAGGCCAATGACTGGATGTACGTCCCTTCTTGTATGAA
AGAATAGAGGTAAAAAGAATGTTGTGCGAGA

Coding sequence (CDS) from alignment at CM002455.1:804967..809247+

>rna325 ID=rna325|Name=rna325|organism=Nannochloropsis gaditana|type=CDS|length=3414bp|location=Sequence derived from alignment at CM002455.1:804967..809247+ (Nannochloropsis gaditana)
AtgccatttccctcctcggGCCTCCTGAAAGTGGCAGCCgcaggcggaga
agaaagcatgCAGCACGTTCGCCAGCGAAGCCTGGGTAGCAGCAAAGGAA
GCAGCTTCAACGATCACAGTATCACCCCTGCGGTCTTAGACCAGTTGAAT
GTGGCTCAGGAGGCCGAGTCCAACAAGACAGCTTTGGACGCGTTGGGAGG
CCTGTCAGGCCTTGCCAAGGAACTAGAAGTGGATCTGAAGCATGGACTTA
AGGACCGCCAAGTTTCAGAGCTGCGGGCGCGCTTTGGAGCGAATTCCTTC
CCCGAAGCCCCTATAGCGTCATGGCTGGAGTTGTTTGTGAATGCCCTTAA
GGATCCGATCATCGTCGTTCTCATTTTCGCTTGTATCATCTCTTTGGTGG
TAGGACTCATCGAAGACCCTCACGACGGGTGGATAGAGGGGACGGCCATC
ATGGTCGCTATCATGATAGTCGCCACAGTCACTGCCTCTAACAACTACAA
CAAAGAGCTACAGTTTCGGAGCCTGGAAGCCACATCCAAGAAAGACGAGC
GGGTTTTTATCAAACGCAGCGGGGCGCTCCACTTCGTGAATCCAGAAGAG
ATCGTGGTGGGGGACCTGATCAAGCTGAAGGCCGGGGACGGCATTCCCGC
TGACGGCATACTGGTGGATGGCGACGGCGTCAAGGTCAATGAGTCATCCC
TAACAGGCGAGCCTGAAGACCTTCTGAAAAAGGTGGACAAGGATCCCttt
ctgctttcctcctcgctcctcaCAGATCAAGGCAGCAGCCCCGAGATATT
TATATTCGTCATTGCTGTTGGCCCCAGATCGCAGTGGGGAAAGATCCGAG
CCAACCTTGTGCAAGACTCCACGCCAACACCCTTGCAGGAAAAGCTGGAG
CATGCTGCTACCGTCATCGGCAAGGTAGGGACGTTCGTTTCGGTCGCCAC
TTTCCTGGCGCTTGTGGTGATGATCTTCAAGCCGCCTGGGCAGCCCGCAC
GGCACCCTGATGGGCAGAAGATCACGTCTGAGCTCATTAACGCCTTCATC
ATCGCCGTCACAATCATCGTGGTGGCCATACCCGAGGGCCTACCCTTGGC
AGTTACCATATCCTTGGCATACTCGACCAGGAAGATGTACAAAGACCAAA
ATCTCATCCGCGTCTTGGCGGCGTGCGAGACGATGGGCAACGCCACGAAC
ATATGTTCCGACAAAACCGGGACTCTCACGGAGAATCGCATGACGGTGGT
TGAGCTTTGGGCGGGCGGACAAGTGTATATGGACATGAAGGCTGCGGGCA
GCGAATTGAAGCCGAAGCTGAAGAGCATGATTTCGATCAACGTGGCGGTT
AACTCCTCCGCAAATGTGCTTTTTAAGGCCGAGGATGGCACGGTTCTTGC
CCGCCCTAAGATCGTGGGAAGCGCCACAGAGGGTGCTCTGCTGCTTATGA
TACATGCTTGGGGCTTGCATTTCACGCATCTGAAAGACCGCCACTTCCAT
AAGGCGACAGATCGGGTCTTCCCTTTCAAttcggggaagaagcgggccAC
AGCGTTGATACATAAAAAAAATGGGGGATTGCGCGTGCTAGTAAAGGGTG
CCACGGAGTGGGTGCTTAATGACTGCACGGCGTACACTTTGTCTGACGGC
GCTACCATGCCGATGACTCCTGAAGTTCGCGCACAGATTGACGCCCACGT
CCTTTCTATGGCCAACCGGGCTCTCCGGACACTTTGCATCGCACACCGAG
ATTTTCCACCGGGGGAAGCACTGCCGGCGGACTGGGAGGATGTGCCGCCT
GACCATGAAAACCTGGTCTGTGACGGCATCGTGGGCATCATCGACCCTCT
GCGGGAGGATGTCAAAGACGCTGTGAAGACGGCGCAGAAGGCAGGGGTGA
TGGTGCGAATGATAACAGGAGACAACATCCATACAGCCCAGGCCATTGCG
CGGGATTGTGGGATTTTGACGCCAGGAGGCCTGGCGATTGAGGGTCCTGT
CTTTCGTAATTTAACTCCAGCGCAACTCGACGAGCTTCTGCCCCGGATTC
AAGTCATGGCCCGGTCGTCGCCCGAGGACAAGTATCTGATGGTGACGCGC
TTGAACGGGGCAAACCTCCCCAAGGACAAAGCCTCGTGGGAAGAGAAGCA
CCCAGGTcgggactgggaggaggagaaagacctGCTTCTCCCCGGGTACT
ACCAGGAGTGGAACGCATCGCGCGGCAGCGACGGGGGCCACGTTGTGGGC
GTGACGGGGGATGGGACCAATGATGCCCCGGCACTCAAAGCGGCGGATGT
GGGTCTGAGCATGGGCATCACGGGCACGCAAGTGGCCAAGAACGCCTCAG
ACATTGTTATATTGGACGACAAATTCTCTTCCATCGTCAAGGCCATCATG
TGGGGTCGCGCTGTCTACGACAACATCCGCAAGTTTTTGCAGTATCAAAT
GACAGTCAATTTGGCGGCGCTCATCCTCACCTTCTTTGGTGCCGTGACGG
GAATGGGCACGCCGCTTAATGCAGTTATGATGCTGTGGATCAACCTGATC
ATGGACACGATGGGCGCGCTGGCTCTAGGGACGGAGGAGCCGACTGCGGC
GCTATTGAATCGTCGGCCGTACAAGCGCTCAGCCAACTTGTTCTCGCGAC
TAATGGTGCGAAACGTCGTCGGTCAGGTCGTCTTTCAGCTCGGAATACTC
TTCTTTGTGCTTTACCGGGGCCCTTCGCTTTGGGGAGTAGAGGACGGCAA
TTATTGCAGGTCGTGGACTGCCGCCAGCAGTCGCACGGACGTGACCTGGG
AGTTCAATGGCGTAGGGTACACTTGCGCGGACTTCCAGTTAGTCTGCGCC
GAGTACTTTGGGGGGCAGTCGACGGGCGAGTGCTACAGTGAGATGCTTAA
ATATTGGACAACTCCCTCCAGGTTTGAGTCTACTTGCGACCTGCGCTGCG
ACGCCTTCGACTTCACGCACTACACCTTCATCTTCACGTCTTTCGTCATG
TGCCAGGCCTTCAACGAGTTCAATGCGCGTGAACTCTTCAATAACTACAA
CGTTTTCAGGGGCCTTACCCGCAACCCTATATTTCTGGTCATCCTAACCG
TGATCGTTTGCCTTCAAATTATAATCGTTGAGTTCGGCGGGAAGTTTGTG
AGGACCACACCTTTGCCCCTTGAGCTGTGGGCCTGGTCCTTTCTATTCGG
ATTCCTCTCGCTCCCCGTCGGTCTCTTGCTAAAAATTTGTATCCCCCTTA
AGGAGTCGCCTGAGACTTTCTTCGGCTACTTGTTGCCGGACAAGAACGAA
CCCCTGCCGCCGGAGCTATCGAAGCTGGTCATAAGCTCTGAGGACACGAC
CGACGCCGACATGAGCGATGTCTCCCCCCCTATCGCTCGTGTGCACAACG
ACACCCATGTATGA

Synonyms

Publications