rna3248, rna3248 (mRNA) Nannochloropsis gaditana

Overview
Namerna3248
Unique Namerna3248
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1088
Alignment locationCM002460.1:1116162..1117412 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100482g1.2385.mrna
Orig protein idgnl|cribi|Naga_100482g1.2385
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1116162..1117412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100482g1gene3126Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3248rna3248-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27435.1cds3239Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3248 ID=rna3248|Name=rna3248|organism=Nannochloropsis gaditana|type=mRNA|length=1088bp
CATGGATCTGGAACCCAACTCTCCACAAGTTTTTGTGAATGATTGCAATA
ATGAGGAAGAGTCCCCTCCTTTTTCTCCGCTCGATTCCCTCCCACAAGTT
CCATCACCATTGCCCAGCCCTGCCTCCCCCGTGATGGCTTCGCACATCTT
GAAGTCTGTCAGGCTTGAGAAACTTGTACTCCTTCCATCCGTCGTCATGA
TATCGTGGGCTGCCTGGCACTCGTCGTCGTCCTTCTTCCCTTCTTACGGA
GCCCTCCCTCTTCTTCTTTTCCTTGTCACGACCATTTATCTCCTGTCCGT
GTCTCGTTTCGCATCAAGCTTCAATCTGTTCTCAGCACCATTATCACAGC
GCCTAACAAAGGCCGACAAGAAAGCAATCAAATATGCCAACGCCAAGAAA
CGGCTCAAACACACCCGCCAAAAGTACCATCGGAAGAAGTCTCAAATCTA
CAAGGAGTTGACGGAGGAGGAACGAGCGATCGTCAAGGCGGGGATAGTAG
CTAGGGAGGAAGAGAGAGCGGCGAGATTTGCAGCTGTATTGGCGGTCGAT
GCACCGTGGTTAAGAGCGCGGGAGAAAGGCTCGAGCCCAAGACAAGGAGG
GTCGCTTCCTTTCCCTAAGAACCCGGCGATGGGAAGCCCGTGGGAGGCGG
ACCAAAACGAAGAGGCCGACAGACGACAAGAGGCATCCCTAGCTGCCCCC
CCTCCCTCCTTCCCTCCCTCCCTTCCCCGTCACCTTCGCATCGCCCTAGA
CCTGCACTACGGGGAACGCATCCACGGCATCCGTGGCACCCGCTCTCTCA
CCCAGCAAGTGGGATGGTGCTACCACGCCCTGAAACGCGCGTCCTCTTTC
GACAACACCCCTATTTTCCACGTCACTTCTTTCCAAGGGCCCACTGCCGA
GGTCCTGCGCGGGTCTGGCGTTCACAACTGGCCCATCTACAGGCATGCGG
CCTCCGTGGTGGAGGTTTTCCCCCGCCCGTCCATCGTCTACCTGACGCCC
GATGCCGACCAGGTGCTCGCGGCTCCTTTGGACTTGAGCAAAGGTGAGCT
TGTGCCCTGGGAGGGGTAGACCCGCCTGTTGGGCTTCG
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protein sequence of rna3248

>rna3248-protein ID=rna3248-protein|Name=rna3248|organism=Nannochloropsis gaditana|type=polypeptide|length=248bp
MPPPSGVSRPPSFSITLRKLLSHIHLGSLTARSDGPCSFVRLRDKKGGFA
GYRHLGTHRMDSDEETRGLVYQDIVEWGKEDERRATPSYASLRRAMTELE
KGTKEKDQRCSTFEDFIVWTSDISNVRQRPKNVLLSPMSGRIQKIDDVMI
LILDTFAICVCWLELRDRLERGRTGILFRGKKITHAMSTCKVQLKKYTPS
HHPHIKPLLTANMMHLKKIMWLYNESEKLSFQILSSLNRGIAYKLFFP
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mRNA from alignment at CM002460.1:1116162..1117412-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3248 ID=rna3248|Name=rna3248|organism=Nannochloropsis gaditana|type=mRNA|length=1251bp|location=Sequence derived from alignment at CM002460.1:1116162..1117412- (Nannochloropsis gaditana)
ATGCCACCTCCCTCTGGCGTGTCCCGCCCTCCATCCTTCAGCATCACATT
GAGAAAGCTTCTTTCTCACATTCACCTGGGAAGCTTAACAGCTCGAAGCG
ATGGGCCGTGCTCGTGAGAAGCTGGCTGCCTGGACGGATCCGGTGAGGGA
GGGAGGGAAGGAGGGAGGGAGGGAGGGATAAGGGAGGCAGGAAGGGAGGG
AGAGAGGAAGGGAGGCAGGAAGGGAGGGAGGGCAGGGGATAGAAAGGACA
AGGAGAAGAGCTTGAAGGGAGGAAAGACCACTCTTGGGCCGATGGGATTC
TGACAGTGACGGCGAGGATCTCCCTGTCCTCTAAGCTCCCTCCCTTGCCC
CCTCTCTCGCCTTCCTATCCATCCTAGATTTGTGCGGCTGAGGGACAAGA
AGGGTGGATTTGCGGGGTATCGGCATTTGGGTACTCATCGGTGAGAAGAT
GGGGAAAAGGCGGGCGGGAAAGAGGGAGAGGGAGGAAGGGAGGAAGGAAG
GAAGGAGAGAGAATGTTTGCGCGCCGTCGTGCGATCGCGTCGGAGCGTTA
CTGCCTCGAAGCTTGTCCCTGATTCTTATTTTCCCCGTTCATTTTTCGTC
TTCTAGCATGGATTCGGATGAGGAGACGCGCGGGTTGGTTTATCAGGACA
TTGTCGAATGGGGGAAGGAGGACGAACGTCGGGCCACACCCTCGTACGCG
AGCCTGCGCCGGGCGATGACGGAACTGGGTAGCGGATGAGGAGTGGAAGG
AAGGATTAAGGGCGGATGATGTGAAGAGATAAAGCATAAAAACGACTGGA
AGAAAAAGGAACGAAGGAAAAAGATCAGCGATGTAGCACTTTCGAAGACT
TCATTGTCTGGACTTCGGACATCAGCAATGTCAGGCAGCGTCCAAAAAAT
GTCCTTTTATCACCAATGTCCGGCAGGATCCAAAAGATTGATGACGTCAT
GATCCTCATCTTGGATACATTTGCCATCTGCGTGTGCTGGTTGGAATTGA
GAGATCGTTTGGAAAGGGGGCGGACGGGCATCCTCTTCAGGGGGAAAAAA
ATTACCCATGCAATGTCTACTTGTAAAGTTCAACTCAAGAAATACACACC
GTCACACCATCCGCATATAAAACCGTTATTGACAGCCAATATGATGCATC
TAAAGAAAATAATGTGGCTCTACAACGAGAGCGAAAAATTGTCGTTCCAA
ATTCTGTCCAGCCTGAACAGAGGCATCGCATATAAACTCTTTTTTCCCTG
A
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Coding sequence (CDS) from alignment at CM002460.1:1116162..1117412-

>rna3248 ID=rna3248|Name=rna3248|organism=Nannochloropsis gaditana|type=CDS|length=2988bp|location=Sequence derived from alignment at CM002460.1:1116162..1117412- (Nannochloropsis gaditana)
AAAAAGGAACGAAGGAAAAAGATCAGCGATGTAGCACTTTCGAAGACTTC
ATTGTCTGGACTTCGGACATCAGCAATGTCAGGCAGCGTCCAAAAAATGT
CCTTTTATCACCAATGTCCGGCAGGATCCAAAAGATTGATGACGTCATGA
TCCTCATCTTGGATACATTTGCCATCTGCGTGTGCTGGTTGGAATTGAGA
GATCGTTTGGAAAGGGGGCGGACGGGCATCCTCTTCAGGGGGAAAAAAAT
TACCCATGCAATGTCTACTTGTAAAGTTCAACTCAAGAAATACACACCGT
CACACCATCCGCATATAAAACCGTTATTGACAGCCAATATGATGCATCTA
AAGAAAATAATGTGGCTCTACAACGAGAGCGAAAAATTGTCGTTCCAAAT
TCTGTCCAGCCTGAACAGAGGCATCGCATATAAACTCTTTTTTCCCTGAC
ATGGATTCGGATGAGGAGACGCGCGGGTTGGTTTATCAGGACATTGTCGA
ATGGGGGAAGGAGGACGAACGTCGGGCCACACCCTCGTACGCGAGCCTGC
GCCGGGCGATGACGGAACTGGATTTGTGCGGCTGAGGGACAAGAAGGGTG
GATTTGCGGGGTATCGGCATTTGGGTACTCATCGATGCCACCTCCCTCTG
GCGTGTCCCGCCCTCCATCCTTCAGCATCACATTGAGAAAGCTTCTTTCT
CACATTCACCTGGGAAGCTTAACAGCTCGAAGCGATGGGCCGTGCTCAAA
AAGGAACGAAGGAAAAAGATCAGCGATGTAGCACTTTCGAAGACTTCATT
GTCTGGACTTCGGACATCAGCAATGTCAGGCAGCGTCCAAAAAATGTCCT
TTTATCACCAATGTCCGGCAGGATCCAAAAGATTGATGACGTCATGATCC
TCATCTTGGATACATTTGCCATCTGCGTGTGCTGGTTGGAATTGAGAGAT
CGTTTGGAAAGGGGGCGGACGGGCATCCTCTTCAGGGGGAAAAAAATTAC
CCATGCAATGTCTACTTGTAAAGTTCAACTCAAGAAATACACACCGTCAC
ACCATCCGCATATAAAACCGTTATTGACAGCCAATATGATGCATCTAAAG
AAAATAATGTGGCTCTACAACGAGAGCGAAAAATTGTCGTTCCAAATTCT
GTCCAGCCTGAACAGAGGCATCGCATATAAACTCTTTTTTCCCTGACATG
GATTCGGATGAGGAGACGCGCGGGTTGGTTTATCAGGACATTGTCGAATG
GGGGAAGGAGGACGAACGTCGGGCCACACCCTCGTACGCGAGCCTGCGCC
GGGCGATGACGGAACTGGATTTGTGCGGCTGAGGGACAAGAAGGGTGGAT
TTGCGGGGTATCGGCATTTGGGTACTCATCGATGCCACCTCCCTCTGGCG
TGTCCCGCCCTCCATCCTTCAGCATCACATTGAGAAAGCTTCTTTCTCAC
ATTCACCTGGGAAGCTTAACAGCTCGAAGCGATGGGCCGTGCTCAAAAAG
GAACGAAGGAAAAAGATCAGCGATGTAGCACTTTCGAAGACTTCATTGTC
TGGACTTCGGACATCAGCAATGTCAGGCAGCGTCCAAAAAATGTCCTTTT
ATCACCAATGTCCGGCAGGATCCAAAAGATTGATGACGTCATGATCCTCA
TCTTGGATACATTTGCCATCTGCGTGTGCTGGTTGGAATTGAGAGATCGT
TTGGAAAGGGGGCGGACGGGCATCCTCTTCAGGGGGAAAAAAATTACCCA
TGCAATGTCTACTTGTAAAGTTCAACTCAAGAAATACACACCGTCACACC
ATCCGCATATAAAACCGTTATTGACAGCCAATATGATGCATCTAAAGAAA
ATAATGTGGCTCTACAACGAGAGCGAAAAATTGTCGTTCCAAATTCTGTC
CAGCCTGAACAGAGGCATCGCATATAAACTCTTTTTTCCCTGACATGGAT
TCGGATGAGGAGACGCGCGGGTTGGTTTATCAGGACATTGTCGAATGGGG
GAAGGAGGACGAACGTCGGGCCACACCCTCGTACGCGAGCCTGCGCCGGG
CGATGACGGAACTGGATTTGTGCGGCTGAGGGACAAGAAGGGTGGATTTG
CGGGGTATCGGCATTTGGGTACTCATCGATGCCACCTCCCTCTGGCGTGT
CCCGCCCTCCATCCTTCAGCATCACATTGAGAAAGCTTCTTTCTCACATT
CACCTGGGAAGCTTAACAGCTCGAAGCGATGGGCCGTGCTCAAAAAGGAA
CGAAGGAAAAAGATCAGCGATGTAGCACTTTCGAAGACTTCATTGTCTGG
ACTTCGGACATCAGCAATGTCAGGCAGCGTCCAAAAAATGTCCTTTTATC
ACCAATGTCCGGCAGGATCCAAAAGATTGATGACGTCATGATCCTCATCT
TGGATACATTTGCCATCTGCGTGTGCTGGTTGGAATTGAGAGATCGTTTG
GAAAGGGGGCGGACGGGCATCCTCTTCAGGGGGAAAAAAATTACCCATGC
AATGTCTACTTGTAAAGTTCAACTCAAGAAATACACACCGTCACACCATC
CGCATATAAAACCGTTATTGACAGCCAATATGATGCATCTAAAGAAAATA
ATGTGGCTCTACAACGAGAGCGAAAAATTGTCGTTCCAAATTCTGTCCAG
CCTGAACAGAGGCATCGCATATAAACTCTTTTTTCCCTGACATGGATTCG
GATGAGGAGACGCGCGGGTTGGTTTATCAGGACATTGTCGAATGGGGGAA
GGAGGACGAACGTCGGGCCACACCCTCGTACGCGAGCCTGCGCCGGGCGA
TGACGGAACTGGATTTGTGCGGCTGAGGGACAAGAAGGGTGGATTTGCGG
GGTATCGGCATTTGGGTACTCATCGATGCCACCTCCCTCTGGCGTGTCCC
GCCCTCCATCCTTCAGCATCACATTGAGAAAGCTTCTTTCTCACATTCAC
CTGGGAAGCTTAACAGCTCGAAGCGATGGGCCGTGCTC
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Synonyms
Publications