rna3243, rna3243 (mRNA) Nannochloropsis gaditana

Overview
Namerna3243
Unique Namerna3243
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2648
Alignment locationCM002460.1:1105165..1106470 -

Link to JBrowse

Properties
Property NameValue
Productpara-aminobenzoate synthase
Orig transcript idgnl|cribi|Naga_100587g1.4460.mrna
Orig protein idgnl|cribi|Naga_100587g1.4460
GenePABS
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1105165..1106470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PABSgene3121Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27439.1cds3234Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3243rna3243-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3243 ID=rna3243|Name=rna3243|organism=Nannochloropsis gaditana|type=mRNA|length=2648bp
GCCGTAGATTGCTGTGGATTGGCCACACTGAAAGCAAAGCTTGGGCATAG
ACCACCAGGCCCTAGAATCACGAGCCCCCCCACCCCTGCCCCCTCGCGCA
GTTGTCAGGCACCTTGGAGGAAAACGGGCTCCGGCCCCAGGAATGCAGGC
CGTGGGGACAGACCGGGCGGGAGGGCGGGGGGGAGGGAGACTTGTTGGTG
CTGGAGGTGCCGGTGGAGGTAGCGGGGGAGGAAGGGCTGAGCTGGCCCCG
GACCAATTTGATGGCGCGGCTCAAGGAGCAGGAGGGGGGCGCGGGGTTGG
TGGGCCTGCACAACCTCGGGAACACATGCTTTTTGAACGCACCCTTGCAG
TGCCTCAGCCACACGCCCATCTTGACAGAATACTTCCTCTCCCGGGCCTA
CCTCCGTGACGTGAATTTACACAACATTCTCGGCACCCAAGGTCGTTGTG
CGCAGTTGTATGCCACGCTGCTGCAGGAGTTGTGGGCCGAGACGGGCGGT
GTGCCTCGCTCTGTCAATCCGCGGGCCATCCGTGACCTGATTGGAACGCA
GGGGCTTTTCACCGGCCACGACCAGCACGACGCTCAGGAGCTTCTCGCCT
TTCTCCTCTCCACGTTATCCGAGGACTTGAATCGCGTCAAGAAGAAAAGT
TACATAGAGCAGCCCGACTCGGACGGTCGCCCGGATCATGAGCTGGCGGA
CATATGGTGGCACAACCACTTCAAGCGGGAGCTCTCCCTCGTCGCAGCCC
TTTTTACGGGCCAGTACAAGACAACCACTGCTTGTCCTACCTGCAACTAC
GTTTCGGCGCGCTTCGAGCCGTTCACCGTCCTCCAACTGCCCTTACCCGA
GGAGACGCACCGGAATATTTCCGTCCTCTATGTCCCGGCGGACCAGGAGA
TCCAGACCCCCGTCCACCTCTCGGTGCAGGTCTCCAAGCAAGGGAGCATG
GCAGACGTCAAAGAGGCCGTGATTGCCCTTCTTCACAAAGACGGCGTGCA
GTCCACCCTCCGGGGGAAAAAGCGCGACGACAACGGTAGCAGCACCGTTC
CTAACGGGGAATACAGACGGATCGGCACCACCGACAAGCATGCGAGCAGT
GGAAACGGAAGCAGTATGAGTGATCACAAGAGCAAGGAGACGACATCTTC
GTATGGGCGGGAAAATGGCCATGGGGCCAGCTTCAACCATCTGCCCGCCC
ACCCCCTGCACGCCGAGGACCTCATCTTGGCCGACGTGCGAGGGAGCGTC
GTCACGACCGTGGTCCCGGGGGAATACGCCGTCTCGCGGTGTGGAGCCTT
CCGGGACCGAGACCCGCTGCTCTATTGCTACGAGGTGGCCCCTCTCCTTC
CCTCGTCCTCCCCCGCTCCCTCCCGCGGAGCTTCTCTCGCCCCGTGCTTC
TACCTGCCAGTCCTCCACCGGACCTTTACTCGTCGATACGGGCCCTACTT
TGTCAACCCCTACGAGGTGCGTCCTTTTGGCACCCCGCTTCTTTTCCGAG
TGGAGATGGAGGAGGAGCTTGAGGGCGGGCCGGAGGGCGGGGTGGAGGAC
GAGGGGGCACAGGGGAGGGGATGGGAAAGGAAGACTTTGACGGGTCTGGA
ACTCTACGAGACCATCCATAGCAAGATGTGCCGTCTGTTGCACGGGTGGC
CGCCTCCCACACTCTCCATCCCTCCCGAGGAGAGGATGGAAACCACGGCC
GCCGAGTTGGGGACGGGTAGCGCCCTCCCCCCGCCCCGCTCTCCCCCGCC
TGCGCTCAAAACTTCTTCCATTACGGAGGAAAGTGTCTGTGGCGGGGAAA
TTCCTCGTCCTTGGGGCTTTCGCTTGCGCCTGGTGACCACGGAGGGGAGC
ACCTGTTGCCGATGTGCATGGAAAGAGAGCTGTTTGGGCTGCTTGATCCC
AGCTTCCCCCTACTACGTCCTGACCCTCCATGTGGGGGAGGCCGTGGCGG
TGGACTGGCACGTGAGCGTCGTGAAGGAGCACATGCATGTCCCCACCTTG
GTGGCCTCGCAGGTCCACCCTTCCCTGCTTCGACACCGGCGGGAGGAGGC
GGAGGGGCTGTCGTTGCAGGCTTGCCTGGACGTGTGCATGCGGGAAGAGG
CCCTGGCCGACGAGGTCTACTGCTCTCGGTGTAAAGCCCATCAAAGCGGG
GCCCGTCGGAAAGAGGAATTGTGGCGACTCCCTCCCCTGCTTATCATCCA
CCTTAAACGCTTCCAGTTCACGCAGCAGAGCCGGCGGAAATTGAACGCGC
GGGTTCGTTTCCCACTCGACGACCTCGACCTCGCTCCTTACCTCGCATCT
GCAGCTACCGCTGGGGCCGGCCACGTGGGGAAAGAACACGTTTCGAAGGC
CTCGCATTCCTCCTCTTCCTTGAACGCCCCCCCCCCCCCCTCTCCGAGCC
TTGCCTCGGCAGGGAGTTCCTGCTGCCTCTCCTCGGCGTCGTCCTCGCGT
TACACCCTGTACGCCATCATCCACCACGTCGGGGCTTTACAGGCTGGGCA
CTATGTCTCCACCATTCGGGTCAACCAAGGAGGAAAGTGGTACTGCTTTA
ACGACGCGCGGGTGAGTGCATGCTCGGTCTCGGCATTGTCTGGCTTCCAA
TCATGTCTTGTGGGGTCAAGAAGGGTCTGTGCCTCCACTAGGAGATGA
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protein sequence of rna3243

>rna3243-protein ID=rna3243-protein|Name=rna3243|organism=Nannochloropsis gaditana|type=polypeptide|length=356bp
APLVTPLEYKDRVDRCMELISAGETYEVCLTGQLAAPLPPSLDPFLLYTQ
LRRENPAPFSGFWRHDPRRQLRPRGADEGEGEGGLSPGVLPSTLPVGEPG
LSSAVAGRGRSRLSTLAPAIALCCSSPERFLRVARANGVVESKPIKGTVR
RGQTPAEDARLAAGLAACEKNRAENLMIVDLVRNDISRVTRPGSVQVPRL
MAVESYATVHQLVSTITGVLDEGKDAIDAVIAAFPGGSMTGAPKKRTMEI
IDRLEGGQARGPYSGALGYIAMDGLAADLNIVIRTAVCAPGIVTVGAGGA
IVALSDREKEYEEMMLKARAVAGAVGGRRSGEEKEEEEGREGAGVELEME
DMLLVQ
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mRNA from alignment at CM002460.1:1105165..1106470-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3243 ID=rna3243|Name=rna3243|organism=Nannochloropsis gaditana|type=mRNA|length=1306bp|location=Sequence derived from alignment at CM002460.1:1105165..1106470- (Nannochloropsis gaditana)
GCCCCCCTGGTCACTCCCCTGGAGTACAAGGACCGCGTGGACCGATGCAT
GGAGCTGATCTCGGCCGGGGAGACGTACGAAGTCTGTCTGACCGGGCAAC
TGGCAGCCCCCCTCCCCCCCTCCCTCGATCCCTTCCTCCTCTATACCCAG
TTACGGCGCGAGAACCCGGCCCCGTTCTCGGGCTTCTGGCGGCATGACCC
GAGGCGTCAGCTCCGCCCCCGCGGGGCCGACGAGGGAGAGGGCGAGGGGG
GACTGAGTCCGGGAGTCCTACCCTCCACGTTGCCGGTGGGCGAGCCCGGA
CTCTCCTCAGCCGTGGCAGGCCGTGGGCGATCCCGTCTATCGACCCTCGC
CCCCGCCATTGCCCTCTGTTGCTCCTCCCCTGAACGATTTCTGCGGGTGG
CACGCGCCAACGGGGTGGTGGAGTCGAAGCCCATCAAAGGCACCGTCCGA
AGGGGTCAGACCCCGGCTGAAGATGCCCGTTTGGCGGCCGGTCTGGCTGC
ATGCGAGAAGAACCGGGCGGAGAATTTGATGATCGTGGATCTGGTCCGCA
ACGACATTTCCCGCGTGACCCGTCCGGGCTCGGTTCAAGTGCCGCGACTC
ATGGCAGTGGAATCCTACGCCACTGTGCATCAACTTGTCTCCACCATCAC
CGGCGTGCTGGACGAAGGGAAGGATGCCATCGACGCCGTGATCGCCGCTT
TCCCCGGGGGATCCATGACGGGGGCGCCCAAGAAGCGGACGATGGAGATC
ATTGATCGGCTGGAGGGAGGACAGGCCCGAGGTCCCTACAGCGGGGCGCT
TGGGTACATCGCCATGGACGGTCTCGCCGCCGATCTGAACATCGTGATTC
GTACTGCCGTTTGTGCACCGGGCATAGTAACGGTCGGGGCAGGAGGCGCC
ATTGTCGCCCTGTCGGATAGGGAGAAGGAATACGAAGAGATGATGCTGAA
AGCACGGGCAGTCGCGGGGGCGGTTGGTGGGAGACGGTCGGGGGAGGAGA
AAGAAGAGGAGGAAGGAAGGGAGGGAGCGGGGGTGGAGTTGGAGATGGAA
GATATGCTGCTTGTACAGTGATTTATGAGATTGGAGGGAGAGATATCAGG
CGGGAAGGCTGAAATGTGCGTCGGGTAGAATACATTCACAGATAGTTGGA
TAGGTGGAGGGTTGGAGCGCGTACAGGTAATCGTGTAGAGTAAGGTTGCC
CGAAAAGTGTGACCAGGAAAAAGATTTTGCCAACGGGGCGAGAAAGGGAG
CGACCGAGACTCGCGAAGCCCACAAACACACCATGTACCTTAATAAAATA
TTCACA
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Coding sequence (CDS) from alignment at CM002460.1:1105165..1106470-

>rna3243 ID=rna3243|Name=rna3243|organism=Nannochloropsis gaditana|type=CDS|length=1071bp|location=Sequence derived from alignment at CM002460.1:1105165..1106470- (Nannochloropsis gaditana)
GCCCCCCTGGTCACTCCCCTGGAGTACAAGGACCGCGTGGACCGATGCAT
GGAGCTGATCTCGGCCGGGGAGACGTACGAAGTCTGTCTGACCGGGCAAC
TGGCAGCCCCCCTCCCCCCCTCCCTCGATCCCTTCCTCCTCTATACCCAG
TTACGGCGCGAGAACCCGGCCCCGTTCTCGGGCTTCTGGCGGCATGACCC
GAGGCGTCAGCTCCGCCCCCGCGGGGCCGACGAGGGAGAGGGCGAGGGGG
GACTGAGTCCGGGAGTCCTACCCTCCACGTTGCCGGTGGGCGAGCCCGGA
CTCTCCTCAGCCGTGGCAGGCCGTGGGCGATCCCGTCTATCGACCCTCGC
CCCCGCCATTGCCCTCTGTTGCTCCTCCCCTGAACGATTTCTGCGGGTGG
CACGCGCCAACGGGGTGGTGGAGTCGAAGCCCATCAAAGGCACCGTCCGA
AGGGGTCAGACCCCGGCTGAAGATGCCCGTTTGGCGGCCGGTCTGGCTGC
ATGCGAGAAGAACCGGGCGGAGAATTTGATGATCGTGGATCTGGTCCGCA
ACGACATTTCCCGCGTGACCCGTCCGGGCTCGGTTCAAGTGCCGCGACTC
ATGGCAGTGGAATCCTACGCCACTGTGCATCAACTTGTCTCCACCATCAC
CGGCGTGCTGGACGAAGGGAAGGATGCCATCGACGCCGTGATCGCCGCTT
TCCCCGGGGGATCCATGACGGGGGCGCCCAAGAAGCGGACGATGGAGATC
ATTGATCGGCTGGAGGGAGGACAGGCCCGAGGTCCCTACAGCGGGGCGCT
TGGGTACATCGCCATGGACGGTCTCGCCGCCGATCTGAACATCGTGATTC
GTACTGCCGTTTGTGCACCGGGCATAGTAACGGTCGGGGCAGGAGGCGCC
ATTGTCGCCCTGTCGGATAGGGAGAAGGAATACGAAGAGATGATGCTGAA
AGCACGGGCAGTCGCGGGGGCGGTTGGTGGGAGACGGTCGGGGGAGGAGA
AAGAAGAGGAGGAAGGAAGGGAGGGAGCGGGGGTGGAGTTGGAGATGGAA
GATATGCTGCTTGTACAGTGA
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Synonyms
Publications