rna3235, rna3235 (mRNA) Nannochloropsis gaditana

Overview
Namerna3235
Unique Namerna3235
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1264
Alignment locationCM002460.1:1079663..1082416 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100107g14.4504.mrna
Orig protein idgnl|cribi|Naga_100107g14.4504
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1079663..1082416 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100107g14gene3113Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27450.1cds3227Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3235rna3235-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3235 ID=rna3235|Name=rna3235|organism=Nannochloropsis gaditana|type=mRNA|length=1264bp
ATGGCTTCTTCCTCTGCCGATGCAGCCGCTGTCGTGGCAAAGAATGACGG
GATGGAAGAGGATGACTTCCCTGAAGCCTCCCTGCGCAACATTATCGAGT
CGGACCTAAAATGGATCTTTGTGGGTGGGAAAGGTGGGGTGGGCAAGACC
ACAACTTCTTGTTGTCTGGCCATCCAGCTAGCCAAGGTCCGGGAAAGCGT
CCTCATCATCTCCACCGACCCCGCACACAATCTGTCCGACGCATTTGGTC
AAAAATTTGGAAAAGAGCCTGGGAAAGTGGACGGGTTTGAGAATCTGTTT
GTGATGGAGATAGATCCTTCCTTTGACTGGGAGGAGATGAACGCGATGGT
GGCGCGGTCAGGGTCCATCCCGGGGGCAGAGGGCGAAGGCGGAGGCTTGC
AAAGTATGCTTCAAGAGCTTACTTCCTCCATCCCAGGTATCGACGAGATC
ATTTCGTTCGCGGAGCTCATGAAGCAGGTCGAGCAGATGGATTACTCCAC
GGTCGTCTTCGATACCGCCCCCACGGGCCACACCCTCCGCCTCCTCTCTT
TCCCCTCCACCCTGGAGGGTGCCTTTGGGAAAATCATGGCCTTTAAAAAC
AAATTTTCGGGCCTCATGTCTCAATTTGGAGGCATGATGGGCCAGCCCCC
CGGGGCGGAAGACGCCTTGCTCGGCAAACTTGACCAGACCCGAGATACTA
TCGAGAAGGTCAACAAGCAATTTCGAGACCCGCAGGCGACAACTTTTGTT
TGCGTTTGTATTGCCGAGTTCCTCTCCATCTACGAGACGGAAAGGCTTGT
GCAGGAGCTTGCCAAATTTGAGATCGACACGCACAACATCGTCGTAAACC
AGGTCCTTTTTCCTGACAAGGACGCCACGGAGATGTCGGCCTGGCATGAG
AAGACTAAAGCCACGCTTCCGGGAGAAGCAAATGAGATCATCAGTAAATT
CTTGGCGCGAAAACGGATGCAAGATAAATACATCAATCAAGTATTCGACT
TGTACGAGGACTTTCACGTTGTGCTGATGCCGTTGCTCGACCACGAAGTC
AGAGGTGTGAAGAGCCTTCGGCGATTCAGCGAAGCGCTGCTCACCCCTCC
CGAGAATGAGTAGGATGAGAGCAGAGATTACAGCCGCTTCAAGAAGGAAC
CAAAGCGGTACCCAGAGGGATTGGAAGGGAAGTGAATATACCACTCTGGC
ACAGTACGCATATTGTGAATGACATACTCGTCGTTTACAGAGCTAAAAAG
TCATTCATTTGAGG
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protein sequence of rna3235

>rna3235-protein ID=rna3235-protein|Name=rna3235|organism=Nannochloropsis gaditana|type=polypeptide|length=415bp
MDGLTHRVGVKQPASAPDYTSSFSVPSFSVIPSFAKNWLWGKRRRLLSWN
RSKAFQAGILLAFLGTLSWCILSPATPHAESRLGPPISVSYVESLRQAMG
WVPANHWSRLPHKRLLVTQFASASHAAQFRSTWENHESKFMKVQQDASLL
LACPAADKSRLLQEVIERQKWQYVGSWEHDHPFAHGPLLQYRTPKEGIDV
FFQPMNLHFPKYYNESHPKPIPTCAGGRPFSWQYALYSGAVFAYQLIHLP
FLARYDYFMKIDGDLSFGRTFPFDLGADMAARKCIVAHSAIHGSVDCEDQ
NLAALLAADKALGWPEPKSLAYSWCNKNGEGRKGDLMFFGNFQAYKTQGF
LLSPQILSISRYMYEEWKDGYYKHRWGDQGPFVMYACQMLDVPDLSDDAR
ICSYANFREDGLLNH
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mRNA from alignment at CM002460.1:1079663..1082416-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3235 ID=rna3235|Name=rna3235|organism=Nannochloropsis gaditana|type=mRNA|length=2754bp|location=Sequence derived from alignment at CM002460.1:1079663..1082416- (Nannochloropsis gaditana)
TTCCGGTGTATAAAAAATGCCTGAACGGTATACCATGATCATAGATGAGC
GATATAGTGCATGTTCGACGCGACCTCCCCCACACACACGTACAATTGCT
TAGAGGATCTTTGCCCTTCTCGCGGTCTTTCCATCCCGCTTTCCGCATCG
GACCGAATGTACTTCGGAGCCATGCCAAATCTGCCTTCCCTCCCGACATG
AGTGCATCGAGTCGAGCTTCCCATGGAATTAATTCTGGAGACGTATTCAT
GATCCTTATCAGCCCGGCAGTTGCTGATTTTCACGGACGGGTTTGCAGCA
AACGGAAGGTCATTTTGCGGATAGATTCTTACTCCGTTCTTTCACGCGAC
GCATTTCCATTTTCCCCTGATATATTGGGAAAGTTTAAAAAGTAAATGTG
TAATAGTACGATAACTCAAGTCCATGTATGTATGTGAAAAGACGTAATGA
GATGGGGAGGTGTGGTGCGGGAGCTTATTCACTTTACACGTCTACGGTGA
TACTTGGCCAGAGGTTCGCATATTTCCTGCCACTTTAATGTATCAGATCA
TATTTGCTGTCAGGATTGCATGAAGGGGTGAAAAAAATGAAAATTGGGCC
TGTTAAAAGCTCAACAATTGTGTGAGACGGTGGAAGAAACTGCGTATTTA
TGCGGTTTGCGCGTGGCTGTCTATGAAAGGCGATAATTGCCATCCAAACG
AAAACTATAAAAGACACCAGAGCAATGTCACCTGTCGAAATTTTTCAATC
TCGACCCTACACGGACGGCCAAACCCGCGTGTACGTGGCGCAGGGTCTTA
AAAAGCAGACGGGAAGGGATGCGAGAATCAGGACCATCCTCCATCGCCTC
GGATTTCCGAGTTTGCGCCAAAGTCAAATTTAAGCCCCAAGGTTGCCTAA
ATTACGATTCTTGCCTTTCGTAGCCAACGACAAGCGGAGCCCTCCCATGT
CCAATGCTTGGAAAAATCGAGACACAGCATTTTCTTGGAGTCATACAGCA
TTTCTGGTTTCTGTCCGGGCCATGACTTGGTTGTATCTGTTTTAATATTG
CGTTGCGTGCGATGACTTCGCATGATACGAAGACCCCATACAGGCCCATA
TACCTCCTAAACTTGGCTGTGCCAACCCCATTTCCTGCTTCACCTTTCCC
TTATCCTTACAACATATCCGGCGATATTTATAGACGTTATCATCTTTACA
TCATTTTCATAACCATATAGCCCGGTCTTGGCTTTAATCTTCACGGCGTT
CCATCACCGGGTCCGAAGCACCCATCTAGGCATGGATGGTCTAACACACC
GTGTTGGGGTTAAGCAGCCAGCTTCGGCCCCTGACTACACGTCGTCCTTT
TCTGTGCCTTCCTTCTCGGTCATCCCATCCTTTGCCAAAAACTGGCTCTG
GGGAAAGCGCCGGCGTCTGCTCTCATGGAATCGGTCTAAGGCCTTTCAAG
CAGGCATCTTACTAGCCTTTTTGGGTACTCTGAGCTGGTGTATACTTTCG
CCTGCTACCCCGCACGCAGAATCGCGCTTGGGTCCACCTATTTCTGTGAG
TTACGTCGAATCGCTCCGTCAGGCCATGGGATGGGTACCTGCCAATCACT
GGAGCCGTTTGCCGCATAAAAGATTGCTTGTCACCCAGTTTGCCTCGGCA
TCCCACGCGGCCCAATTTCGTAGCACGTGGGAGAACCACGAAAGCAAATT
TATGAAAGTGCAACAGGATGCCTCCCTCTTACTTGCCTGCCCGGCCGCCG
ACAAAAGCAGACTCCTGCAAGAAGTGATCGAAAGGCAAAAGTGGCAGTAT
GTCGGGAGCTGGGAGCACGACCATCCTTTTGCACACGGGCCATTGCTCCA
GTACCGCACCCCCAAGGAAGGCATCGACGTGTTCTTTCAGCCGATGAACC
TGCATTTTCCCAAGTACTACAACGAGAGCCACCCGAAGCCCATTCCTACA
TGCGCGGGCGGGCGACCTTTCAGCTGGCAGTATGCCCTCTATAGCGGCGC
GGTTTTTGCGTACCAGCTGATTCATCTCCCCTTCTTGGCAAGATACGACT
ATTTCATGAAGATCGACGGAGACTTGAGCTTTGGCCGCACTTTTCCGTTC
GATCTTGGCGCCGACATGGCTGCGCGCAAGTGCATCGTGGCCCATTCAGC
CATCCATGGCTCCGTCGACTGTGAAGACCAGAATTTGGCCGCGCTCTTGG
CCGCAGACAAAGCATTGGGATGGCCGGAGCCCAAAAGTCTGGCTTATTCA
TGGTGCAACAAGAATGGAGAAGGGAGAAAGGGAGACCTGATGTTCTTCGG
AAATTTCCAAGCTTACAAAACGCAAGGTTTCTTGCTTTCTCCCCAGATTT
TGAGCATTAGTCGATACATGTACGAGGAGTGGAAAGACGGCTACTACAAG
CACCGGTGGGGGGACCAGGGCCCCTTCGTGATGTATGCCTGCCAGATGCT
TGACGTGCCAGACCTGTCGGACGACGCGAGAATATGTAGTTATGCCAACT
TTCGCGAAGATGGCTTGCTAAATCATTAAGATCAGTGTCAATTGAAAATA
GGGGACGAACAAAAGAAACGTGGTCTTTGTCGCAGCGTAGATTAAACAAT
GAATTTTGGACATATACACTCCAATGAAATGTGAGCAATGGACCTTCTCA
CGCATACAATGACCTCAACATATTATTCATTCCACTTCGACTCAAAGAAT
CTTTCCTAATACACGCCAAACGTGACATTTTGCCGCTTTACAGTCCAGTT
TACC
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Coding sequence (CDS) from alignment at CM002460.1:1079663..1082416-

>rna3235 ID=rna3235|Name=rna3235|organism=Nannochloropsis gaditana|type=CDS|length=1248bp|location=Sequence derived from alignment at CM002460.1:1079663..1082416- (Nannochloropsis gaditana)
ATGGATGGTCTAACACACCGTGTTGGGGTTAAGCAGCCAGCTTCGGCCCC
TGACTACACGTCGTCCTTTTCTGTGCCTTCCTTCTCGGTCATCCCATCCT
TTGCCAAAAACTGGCTCTGGGGAAAGCGCCGGCGTCTGCTCTCATGGAAT
CGGTCTAAGGCCTTTCAAGCAGGCATCTTACTAGCCTTTTTGGGTACTCT
GAGCTGGTGTATACTTTCGCCTGCTACCCCGCACGCAGAATCGCGCTTGG
GTCCACCTATTTCTGTGAGTTACGTCGAATCGCTCCGTCAGGCCATGGGA
TGGGTACCTGCCAATCACTGGAGCCGTTTGCCGCATAAAAGATTGCTTGT
CACCCAGTTTGCCTCGGCATCCCACGCGGCCCAATTTCGTAGCACGTGGG
AGAACCACGAAAGCAAATTTATGAAAGTGCAACAGGATGCCTCCCTCTTA
CTTGCCTGCCCGGCCGCCGACAAAAGCAGACTCCTGCAAGAAGTGATCGA
AAGGCAAAAGTGGCAGTATGTCGGGAGCTGGGAGCACGACCATCCTTTTG
CACACGGGCCATTGCTCCAGTACCGCACCCCCAAGGAAGGCATCGACGTG
TTCTTTCAGCCGATGAACCTGCATTTTCCCAAGTACTACAACGAGAGCCA
CCCGAAGCCCATTCCTACATGCGCGGGCGGGCGACCTTTCAGCTGGCAGT
ATGCCCTCTATAGCGGCGCGGTTTTTGCGTACCAGCTGATTCATCTCCCC
TTCTTGGCAAGATACGACTATTTCATGAAGATCGACGGAGACTTGAGCTT
TGGCCGCACTTTTCCGTTCGATCTTGGCGCCGACATGGCTGCGCGCAAGT
GCATCGTGGCCCATTCAGCCATCCATGGCTCCGTCGACTGTGAAGACCAG
AATTTGGCCGCGCTCTTGGCCGCAGACAAAGCATTGGGATGGCCGGAGCC
CAAAAGTCTGGCTTATTCATGGTGCAACAAGAATGGAGAAGGGAGAAAGG
GAGACCTGATGTTCTTCGGAAATTTCCAAGCTTACAAAACGCAAGGTTTC
TTGCTTTCTCCCCAGATTTTGAGCATTAGTCGATACATGTACGAGGAGTG
GAAAGACGGCTACTACAAGCACCGGTGGGGGGACCAGGGCCCCTTCGTGA
TGTATGCCTGCCAGATGCTTGACGTGCCAGACCTGTCGGACGACGCGAGA
ATATGTAGTTATGCCAACTTTCGCGAAGATGGCTTGCTAAATCATTAA
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Synonyms
Publications