rna3233, rna3233 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3233
Unique Name	rna3233
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1558
Alignment location	CM002460.1:1074281..1076936 +

Link to JBrowse

Properties


Property Name	Value
Product	e3 ubiquitin-protein ligase rnf14
Orig transcript id	gnl\|cribi\|Naga_100107g12.4510.mrna
Orig protein id	gnl\|cribi\|Naga_100107g12.4510
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1074281..1076936 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100107g12	gene3111	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3233	rna3233-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27456.1	cds3225	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1074281..1076936+
coding sequence from alignment at CM002460.1:1074281..1076936+

mRNA sequence

>rna3233 ID=rna3233|Name=rna3233|organism=Nannochloropsis gaditana|type=mRNA|length=1558bp
CACCGAGTCACAGCTTCTTGCGCTCTATGGACTGCTCTAGATCGCTACAA
GAACGGATATCATTTGTCAATCAGCATCAGCCATGGCCCGATCCAGAAAA
AGAAGGCAGAGACGGGTCATATCGCGGATATACGATGGAGGTAGCTGCAA
ATGAAACTCAAGCATTGCAAGTTGGAGAAGAAAACGTGCAAGTGGCGTAT
CGACTTGTCCAGCTGTTGGACGCCGATACACGATTATTCCTAGCGGACGA
CTTGCTCCAAAAGATAGAGGCGTTCACTAGAACCGGCACAGGGCCACAAG
CAGAGTGGGCGATGCACGTCATGGCACGTTCAGAGGATTCTCAGCGCTTG
GAGGAGCTTCGTCGGCGGGTCCAGGTCTGTCGACAGGCAGCCAGAGATAT
GCAGTCGGAGGACTGGGAGCTCGCCCATACGGAGGAAGGCATTCAGACTT
TCTTGAGAAGGGACGAGGGGGATAACACCTTGGCTTGGCGGACTCACGGA
GAAATTGAGGACTGTCCTGTTGTTTCTCAGCTGGCGGTTTTACGCGAAGC
CGACCACTACCACGATTGGATTCCCTTGATGGACAAGAGCAAGGTTGTCA
AGCGCCTAGGGAAAATCGAGCAAATGCTCTGGTTTCGTGTGGCTGGCCGC
GGACTTCCTTTCGTTCGCGACGCCGTCCTGCACCTCTACGGCTGCGATGC
GTCGGAAGAAGACTTGATAATCCTGTCAGGCGCCTCCATACCTGAGGATG
AGATCACAGAATCGATGGGCGTACGCCCTCCCAAGAAGAAATGGAATCAC
GCCCGGGTCGATATCAAGTATTTTAGTATCCAACTCCGAATCCTTTCTCC
CACTCATACCAAAATCGATTTGATCTACAAGTTGGACGTCAAAATCAAGT
TCGTCCCCCAAAAAGTGATCAATTATTTCTCGAAATTTTTGTGTGGCTGG
GTCATATGGTTTTTATTTCAAGAGATGCGGCGTCTCCAGACCGATCCTGT
GGAAAGTCCCACCGCCCAGCTTATGCGCTCTGAACCCTTCTACGCCAACT
ACTTGGTCCCTTACTGCCTAAACCTTGCTTATACGAAGGGATGGGAAGTG
CCTCCGGTACCTGCTTTCGAGATAAACAAGGATTGCGCTTCCGCCCAAGC
TTGGCGACAAGAATACCACGAGTTGCTGGCTAAAAATAGGTTGTTAGGTG
ACGAAGAAAACTCAGGTATTAAAGAAAGCGTTGATAAAGAATACAGAGAC
AGCGGTGGAGAGTCAAGGAAACAAGTAGACTATCAAGGAGAGGAGTAATG
TGTAGGTAAGTGATAGACACGGACCCACATTACATGATGAGGAGAATAGT
GATAAGTCTATGGCGACAGATGGATCCTGATCAACAGCTTTAGCGCAGCC
CTAAAACTAAAGTGACACCTCAGGAGGAATAGATGTAACCGATTCACTCC
CACAATATATGTTTGACAGCACTGATTGTGAAGTAGGATAGCGACGTGAG
ATTGAAGTCAAAGCATTCCAGGCAATAGAAAGAATCTAAGGGATACGAAA
ATAGGAAA

protein sequence of rna3233

>rna3233-protein ID=rna3233-protein|Name=rna3233|organism=Nannochloropsis gaditana|type=polypeptide|length=683bp
MSEEEECQEQQVLEVEALQAILGAGQAGVELDEVSFDVRGDGSTGSPFRL
RCEVDIELPAQEAIDIIVTGGTRTSESYREHDDSSENDGEVNAEVACSKN
TSAIDPSPQLELRGIKYLSPLTLYLALPSTYPVTCPPELTIEGLWVDEPS
SRRIKAELTRMWEEIYHGGPVIYSWMEWLRHDLMEILLVEPILGREVKEK
DANDTGTGASEAPRPGEGEALNDLSRRTLILQGSPPQALFTGHNVDEADW
SLPKTTHAEVAPTWQSRFRHLVAHAYAKTSAVFLQGTHTCFICFDEQPGL
SFVTLQCGHWWCRSCLRSMASTYVTEGGHHLQWLVCPRPDCALEITPDVL
RHELLTSEEFARWERLSLQQALDRMEDVAPCPRCQTPCLTEGGRRREGGS
DEGKVDGKGRSKTGGADLGECPTCNFVFCPQCQDAYHAGTPCYSSEARLK
QVESEIARLMASTQGGRALAPSQNVRLEKLRRAAEESLSRKVVEKDAKSC
PACGMSVQKTEGCNKMRCQCGVLWCWKCRKDISTEGYAHFSENATGGCNL
WEREALLAWQRQMLMMEGGGMGNGGGGGDRRRAGGDLHGEMVRMLQWGRG
WEGEGPGEGRRRRRGRWRGEDANEDGVKLVRCGACHAMNLKTDSNNHRRC
GACRRSYCAVCGCHTFRKASDHFGGSKPCRQHS

mRNA from alignment at CM002460.1:1074281..1076936+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3233 ID=rna3233|Name=rna3233|organism=Nannochloropsis gaditana|type=mRNA|length=2656bp|location=Sequence derived from alignment at CM002460.1:1074281..1076936+ (Nannochloropsis gaditana)
CACAGGatgtcggaggaggaagaatgcCAAGAACAGCAGGttttggaggt
ggaagcgCTTCAGGCAATTCTTGGAGCAGGCCAGGCAGGGGTTGAGCTTG
ATGAGGTCTCTTTCGACGTCCGAGGCGACGGTTCAACAGGCagtcccttc
cgccttcgATGCGAGGTAGACATCGAGCTACCGGCTCAAGAAGCTATCGA
TATCATTGTGACGGGCGGGACAAGAACCTCCGAGTCGTACAGGGAGCACG
ACGATTCTTCTGAAAATGACGGGGAGGTTAATGCTGAGGTTGCTTGTTCC
AAAAATACATCTGCGATAGATCCTTCTCCACAATTGGAGTTGCGCGGCAT
CAAATATTTATCGCCACTTACACTGTATTTGGCTCTACCATCCACATATC
CTGTTACTTGCCCCCCTGAATTGACGATTGAAGGCCTGTGGGTTGACGAG
CCGAGTTCCAGACGAATCAAAGCAGAGCTGACGCGAATGTGGGAGGAGAT
ATATCATGGAGGTCCCGTGATATACTCGTGGATGGAATGGTTGCGTCACG
ATTTGATGGAGATATTGCTGGTGGAGCCCATCTTGGGCCGAGAAGTAAAA
GAAAAAGATGCGAACGACACTGGGACAGGCGCATCAGAAGCCCCCCGAcc
cggcgagggagaagcacTCAACGACCTGAGTCGACGGACGCTTATATTGC
AAGGTTCCCCGCCACAGGCTTTGTTCACCGGGCATAATGTCGATGAGGCG
GATTGGTCCCTTCCAAAAACTACTCACGCCGAGGTCGCTCCTACCTGGCA
GTCGCGTTTCCGCCATCTGGTGGCCCATGCCTACGCGAAGACCAGCGCCG
TATTTCTCCAAGGCACCCACACATGCTTCATCTGCTTCGATGAACAGCCA
GGTCTCTCCTTCGTGACATTGCAATGCGGTCATTGGTGGTGCCGATCGTG
CCTGCGGAGTATGGCGAGTACCTACGTGACCGAAGGGGGCCATCACTTAC
AATGGTTGGtctgcccccgcccagaCTGCGCCTTGGAAATCACACCGGAC
GTTTTACGTCACGAACTTTTGACCTCGGAGGAGTTCGCGCGCTGGGAGCG
GCTGTCTTTGCAGCAGGCGTTGGACCggatggaggacgtggctcCCTGCC
CGCGATGCCAGACACCGTGCCTCactgaagggggaagaaggagggaagga
gggtcagacgaagggaaagtggatgggaagggaaggtcgAAAACTGGTGG
GGCAGATTTGGGAGAGTGCCCCACCTGCAATTTTGTCTTTTGTCCTCAGT
GCCAGGATGCCTACCACGCCGGGACTCCCTGCTATTCCTCCGAGGCAAGG
CTGAAGCAAGTAGAGTCAGAAATTGCCCGTTTGATGGCGTCCACACAGGG
TGGCCGGGCCTTGGCCCCGTCCCAAAACGTCCGCTTAGAAAAACTCCGac
gggcggcggaggagtcCTTGTCGAGGAAGGTCGTGGAGAAAGACGCCAAG
TCCTGTCCTGCCTGCGGCATGTCTGTTCAGAAAACAGAGGGCTGCAACAA
AATGAGGTGCCTCTTctgacctctcctccctctccccccccctcctttcc
cccctttcttttctctccttctcacgGGCTCTTCGCCCGACTTCCCTTTG
GAGATCTTTTTTTACTGTCAGCCACGAGCTGTACATGAATCAACCTTCGG
CGGTCTAGACACTTACCCCTCACCTTATCTTCTTGCcgtccctttttcca
tcttTTCGAAGGTGCCAGTGTGGAGTGCTGTGGTGCTGGAAATGCAGGAA
AGATATCTCGACTGAGGGGTATGCCCATTTCAGCGAAAACGCAACCGGGG
GATGTAATTtatgggaaagggaagcgttGCTAGCCTGGCAACGGCAAATG
CTTatgatggagggaggaggaatgggaaacgggggaggaggtggcgataG
AAGaagagcggggggggatcTTCATGGAGAGATGGTTCGGATGCTGCAAT
GGGGTCGAGGttgggagggcgaaggcccaggggaaggacgccGACGGCGG
AGAGGCCGctggaggggagaggacgccaATGAAGATGGAGTGAAGCTGGT
GCGTTGCGGGGCGTGCCATGCCATGAATTTGAAAACGGATTCCAATAACC
ACCGACGCTGCGGCGCCTGTCGAAGGAGTTACTGTGCGGTCTGCGGCTGT
CACACGTTTCGCAAGGCCAGTGACCATTTTGGGGGGTCCAAACCCTGTCG
GCAGCATTCgtgagaagaggacgaaaaaGAGTTAAGTAATGGTGTCTGCG
GGGCGTGCTCTGGAAAGAAGATAGCGCTGGCGTGGAAATTGACGCGTTAA
AattggaggaagacggcttggaacaggcgtggagggactGAAATGTGTAA
AGGGGGAGGATTTACGGTAAGGGGGAGGATTAGCGGTCGCCGTGCTCAGT
CGACGGACCATCGATAAGGAGGCAGTTGTGGCCGATGATATTTTTATGAG
CATATGGACTGACTCGGGCGGAGAGAGATTTTACGGTGGTGAATGTGTTG
GGTGCCCCTGTAGCCGGGGAGGGATAAAAAGGAGATCCCGATTGGAGAAG
CTTGACAAAGGAAAAATTACAAGCATCTAGAAGACCTCAAATGAATGACT
TTTTAG

Coding sequence (CDS) from alignment at CM002460.1:1074281..1076936+

>rna3233 ID=rna3233|Name=rna3233|organism=Nannochloropsis gaditana|type=CDS|length=4104bp|location=Sequence derived from alignment at CM002460.1:1074281..1076936+ (Nannochloropsis gaditana)
atgtcggaggaggaagaatgcCAAGAACAGCAGGttttggaggtggaagc
gCTTCAGGCAATTCTTGGAGCAGGCCAGGCAGGGGTTGAGCTTGATGAGG
TCTCTTTCGACGTCCGAGGCGACGGTTCAACAGGCagtcccttccgcctt
cgATGCGAGGTAGACATCGAGCTACCGGCTCAAGAAGCTATCGATATCAT
TGTGACGGGCGGGACAAGAACCTCCGAGTCGTACAGGGAGCACGACGATT
CTTCTGAAAATGACGGGGAGGTTAATGCTGAGGTTGCTTGTTCCAAAAAT
ACATCTGCGATAGATCCTTCTCCACAATTGGAGTTGCGCGGCATCAAATA
TTTATCGCCACTTACACTGTATTTGGCTCTACCATCCACATATCCTGTTA
CTTGCCCCCCTGAATTGACGATTGAAGGCCTGTGGGTTGACGAGCCGAGT
TCCAGACGAATCAAAGCAGAGCTGACGCGAATGTGGGAGGAGATATATCA
TGGAGGTCCCGTGATATACTCGTGGATGGAATGGTTGCGTCACGATTTGA
TGGAGATATTGCTGGTGGAGCCCATCTTGGGCCGAGAAGTAAAAGAAAAA
GATGCGAACGACACTGGGACAGGCGCATCAGAAGCCCCCCGAcccggcga
gggagaagcacTCAACGACCTGAGTCGACGGACGCTTATATTGCAAGGTT
CCCCGCCACAGGCTTTGTTCACCGGGCATAATGTCGATGAGGCGGATTGG
TCCCTTCCAAAAACTACTCACGCCGAGGTCGCTCCTACCTGGCAGTCGCG
TTTCCGCCATCTGGTGGCCCATGCCTACGCGAAGACCAGCGCCGTATTTC
TCCAAGGCACCCACACATGCTTCATCTGCTTCGATGAACAGCCAGGTCTC
TCCTTCGTGACATTGCAATGCGGTCATTGGTGGTGCCGATCGTGCCTGCG
GAGTATGGCGAGTACCTACGTGACCGAAGGGGGCCATCACTTACAATGGT
TGGtctgcccccgcccagaCTGCGCCTTGGAAATCACACCGGACGTTTTA
CGTCACGAACTTTTGACCTCGGAGGAGTTCGCGCGCTGGGAGCGGCTGTC
TTTGCAGCAGGCGTTGGACCggatggaggacgtggctcCCTGCCCGCGAT
GCCAGACACCGTGCCTCactgaagggggaagaaggagggaaggagggtca
gacgaagggaaagtggatgggaagggaaggtcgAAAACTGGTGGGGCAGA
TTTGGGAGAGTGCCCCACCTGCAATTTTGTCTTTTGTCCTCAGTGCCAGG
ATGCCTACCACGCCGGGACTCCCTGCTATTCCTCCGAGGCAAGGCTGAAG
CAAGTAGAGTCAGAAATTGCCCGTTTGATGGCGTCCACACAGGGTGGCCG
GGCCTTGGCCCCGTCCCAAAACGTCCGCTTAGAAAAACTCCGacgggcgg
cggaggagtcCTTGTCGAGGAAGGTCGTGGAGAAAGACGCCAAGTCCTGT
CCTGCCTGCGGCATGTCTGTTCAGAAAACAGAGGGCTGCAACAAAATGAG
GTGCCAGTGTGGAGTGCTGTGGTGCTGGAAATGCAGGAAAGATATCTCGA
CTGAGGGGTATGCCCATTTCAGCGAAAACGCAACCGGGGGATGTAATTta
tgggaaagggaagcgttGCTAGCCTGGCAACGGCAAATGCTTatgatgga
gggaggaggaatgggaaacgggggaggaggtggcgataGAAGaagagcgg
ggggggatcTTCATGGAGAGATGGTTCGGATGCTGCAATGGGGTCGAGGt
tgggagggcgaaggcccaggggaaggacgccGACGGCGGAGAGGCCGctg
gaggggagaggacgccaATGAAGATGGAGTGAAGCTGGTGCGTTGCGGGG
CGTGCCATGCCATGAATTTGAAAACGGATTCCAATAACCACCGACGCTGC
GGCGCCTGTCGAAGGAGTTACTGTGCGGTCTGCGGCTGTCACACGTTTCG
CAAGGCCAGTGACCATTTTGGGGGGTCCAAACCCTGTCGGCAGCATTCgt
gaatgtcggaggaggaagaatgcCAAGAACAGCAGGttttggaggtggaa
gcgCTTCAGGCAATTCTTGGAGCAGGCCAGGCAGGGGTTGAGCTTGATGA
GGTCTCTTTCGACGTCCGAGGCGACGGTTCAACAGGCagtcccttccgcc
ttcgATGCGAGGTAGACATCGAGCTACCGGCTCAAGAAGCTATCGATATC
ATTGTGACGGGCGGGACAAGAACCTCCGAGTCGTACAGGGAGCACGACGA
TTCTTCTGAAAATGACGGGGAGGTTAATGCTGAGGTTGCTTGTTCCAAAA
ATACATCTGCGATAGATCCTTCTCCACAATTGGAGTTGCGCGGCATCAAA
TATTTATCGCCACTTACACTGTATTTGGCTCTACCATCCACATATCCTGT
TACTTGCCCCCCTGAATTGACGATTGAAGGCCTGTGGGTTGACGAGCCGA
GTTCCAGACGAATCAAAGCAGAGCTGACGCGAATGTGGGAGGAGATATAT
CATGGAGGTCCCGTGATATACTCGTGGATGGAATGGTTGCGTCACGATTT
GATGGAGATATTGCTGGTGGAGCCCATCTTGGGCCGAGAAGTAAAAGAAA
AAGATGCGAACGACACTGGGACAGGCGCATCAGAAGCCCCCCGAcccggc
gagggagaagcacTCAACGACCTGAGTCGACGGACGCTTATATTGCAAGG
TTCCCCGCCACAGGCTTTGTTCACCGGGCATAATGTCGATGAGGCGGATT
GGTCCCTTCCAAAAACTACTCACGCCGAGGTCGCTCCTACCTGGCAGTCG
CGTTTCCGCCATCTGGTGGCCCATGCCTACGCGAAGACCAGCGCCGTATT
TCTCCAAGGCACCCACACATGCTTCATCTGCTTCGATGAACAGCCAGGTC
TCTCCTTCGTGACATTGCAATGCGGTCATTGGTGGTGCCGATCGTGCCTG
CGGAGTATGGCGAGTACCTACGTGACCGAAGGGGGCCATCACTTACAATG
GTTGGtctgcccccgcccagaCTGCGCCTTGGAAATCACACCGGACGTTT
TACGTCACGAACTTTTGACCTCGGAGGAGTTCGCGCGCTGGGAGCGGCTG
TCTTTGCAGCAGGCGTTGGACCggatggaggacgtggctcCCTGCCCGCG
ATGCCAGACACCGTGCCTCactgaagggggaagaaggagggaaggagggt
cagacgaagggaaagtggatgggaagggaaggtcgAAAACTGGTGGGGCA
GATTTGGGAGAGTGCCCCACCTGCAATTTTGTCTTTTGTCCTCAGTGCCA
GGATGCCTACCACGCCGGGACTCCCTGCTATTCCTCCGAGGCAAGGCTGA
AGCAAGTAGAGTCAGAAATTGCCCGTTTGATGGCGTCCACACAGGGTGGC
CGGGCCTTGGCCCCGTCCCAAAACGTCCGCTTAGAAAAACTCCGacgggc
ggcggaggagtcCTTGTCGAGGAAGGTCGTGGAGAAAGACGCCAAGTCCT
GTCCTGCCTGCGGCATGTCTGTTCAGAAAACAGAGGGCTGCAACAAAATG
AGGTGCCAGTGTGGAGTGCTGTGGTGCTGGAAATGCAGGAAAGATATCTC
GACTGAGGGGTATGCCCATTTCAGCGAAAACGCAACCGGGGGATGTAATT
tatgggaaagggaagcgttGCTAGCCTGGCAACGGCAAATGCTTatgatg
gagggaggaggaatgggaaacgggggaggaggtggcgataGAAGaagagc
ggggggggatcTTCATGGAGAGATGGTTCGGATGCTGCAATGGGGTCGAG
GttgggagggcgaaggcccaggggaaggacgccGACGGCGGAGAGGCCGc
tggaggggagaggacgccaATGAAGATGGAGTGAAGCTGGTGCGTTGCGG
GGCGTGCCATGCCATGAATTTGAAAACGGATTCCAATAACCACCGACGCT
GCGGCGCCTGTCGAAGGAGTTACTGTGCGGTCTGCGGCTGTCACACGTTT
CGCAAGGCCAGTGACCATTTTGGGGGGTCCAAACCCTGTCGGCAGCATTC
gtga

Synonyms

Publications