rna3219, rna3219 (mRNA) Nannochloropsis gaditana

Overview
Namerna3219
Unique Namerna3219
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1049
Alignment locationCM002460.1:1029571..1030642 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100257g10.9930.mrna
Orig protein idgnl|cribi|Naga_100257g10.9930
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1029571..1030642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100257g10gene3097Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3219rna3219-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27466.1cds3211Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3219 ID=rna3219|Name=rna3219|organism=Nannochloropsis gaditana|type=mRNA|length=1049bp
ATTTCCCTGCCTTCATCCCCTACAAGTGGTTCATGACAGAGCGCCAAGAC
TCTATCGTCGATCCAACTAAATCGACTTGCTTCACATGTCGCTTGTGCCG
GTCAGCTCTCTTTAGCGACAAAGATTTGGAGCCCCACGCTACCGGGGCAC
AGCGAATCAATCGTCGCAAAGTTGGAAGAAGCGTGGATGACTCTGCAGCA
CACATTCAGGCGTGCACGTCCTACTTCTTAAATGAAGCCGCGATGGAATC
TTTGGAGTGGGTGCGCGCGGCCTTACAGGCGCATGACGAGGCAATTGCCT
CTAATTCGGCCGTTCAAACAAGCAGCGAAAGTATCGAGGGAAAGCTTGTA
TGCCCCAATGCAAGGTGTGCTGCTCGATTAGGGAGCTTCAATTGGAGCGG
TACACAGTGCTCGTGCGGCTCGTGGGTGGTACCAGCCGTTCAGGTGGTCG
GAAGCAAAGTGGATCGGAAGGGGACTGAAGAAACCGAAGGGTTGATGGTA
GTGGATTTCGGTGCACAGGTACGTAAAAATCTGGAAGTGCCCCAGCAGCA
GGAAAATTGCGCAGAGAAAGACAAGACAAGAGAAGGAAGCGAAGAAGCGA
CACGGTCATGACCCAGCACCAAGAGTTTGGAACCTCGTGCTCAGACACGT
CGTGGACAGACCAGCCGTGATAGTTTGCACACCCTTTTGTACATCCCTTT
GATAAGTTTCGATTCACATGCTTTTTAAGAAATGAAGGACCAGAAGGCAA
AATTCCCCTTCCAAGCATCGGGCTTGCACTTCCCACATGTTTGCCCTGCC
CTGCAGTTGCAATTTTGTTCCTCGTATACTGTGCTTGTCCATATGTCTTC
TACAGAGATGCCCTTCTCCGTTTCAACAGCCGCGGGATTACGCGGCTGAC
GGATGTTTGGGATCAGGCAGGCATGGAGATACAGCTCGAGTATCTCCCCG
TGCAGCGCCCTCTACTTCATCATCTTTGCCACCTGGACAATCAAATCGCA
ATCACACGCTTGAAACCATGGAAATACATGTTTATTATTTTCTTCATCG
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protein sequence of rna3219

>rna3219-protein ID=rna3219-protein|Name=rna3219|organism=Nannochloropsis gaditana|type=polypeptide|length=121bp
MRSCNIEKGSRAVAECSTRLSSGSQAARAPRSSSAQHSCLQWAVYRSGSS
DSKIQRAGRVMIFSLQKNLKRSSVWRKKGRRKFLQRLRERTYRKLHELKR
KFVSLYCFHKLERCRCPNFSL
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mRNA from alignment at CM002460.1:1029571..1030642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3219 ID=rna3219|Name=rna3219|organism=Nannochloropsis gaditana|type=mRNA|length=1072bp|location=Sequence derived from alignment at CM002460.1:1029571..1030642- (Nannochloropsis gaditana)
ATGCGTGAGGACTGAAGTTACACAAGGGCGTGCTTTTCATCGAGCTGCAG
GCGGCAGCCTCCCTTGCAGCGATGCATTTCGGCGGGGTGGGGCCATAATC
CCTTATTGCCTCCCCACATGTTGTGAAATTTCCGACTTATTGCGAGGCCT
AGGCATCACAAACATGGCATATTGACGTACTGGCCTTCGCGGCAGCCTAG
AAGATACAAAGCCTGCAAGCTGATAGACGACTGACCGGAAAGTGACGCCA
GCTACCACCACCTCATCGCAACACACATTGCATTCACTTCAGGTTCTTGC
AATATCGAAAAAGGGAGCAGGGCGGTAGCGGAATGTTCTACACGATTATC
AAGCGGATCCCAGGCAGCCAGGGCACCAAGGTAAGTGTCGTTTATTCGCA
TGTGTCCGAGCAGACTGGCAGCATAGACCTCCCCCTCGTCAGACGATTAC
AGCAACGATTGTCTACCCTTTTTGAAGGACAACAGTTATTTGAACCCATT
CTTACCTTTTCTTCCTCTCACGTTGCTGCACAAGGTCTTCGTCGGCACAA
CACTCATGCTTACAGTGGGCTGTTTACCGTTCTGGATCAAGCGATGTACG
TGAGCGGAAAAGCATCCTCCAACTTGTCCGTGTTCTCTTTCCGTTCTCTT
TGATAATATTTCCTTCTTCTGGAACACCACGCAACTTTGGAACATTTTAT
GTTGGTGTGAGAGTAGGCATGGTCTCTTTCTCAATTTTCAAGTGACAGGT
TTCAGCTGCTGGCTTAGAGTTCTTTCAGAAGAAAGAGAAAAGGAATTCGT
CTACTGTGTACTCGATATTTCTAGAGCCCTAACCCCACTCTATTTTGCAC
ACCCTCCAGTCAAAAATTCAGAGAGCAGGGCGGGTCATGATCTTTTCTCT
TCAGAAAAACCTGAAGCGATCGAGCGTATGGAGGAAGAAAGGAAGGAGAA
AATTCTTACAAAGGTTGCGTGAGAGGACGTATCGCAAATTGCATGAACTT
AAAAGAAAATTTGTTTCGTTGTATTGTTTCCACAAACTGGAACGTTGTCG
GTGTCCCAACTTTTCGTTGTAG
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Coding sequence (CDS) from alignment at CM002460.1:1029571..1030642-

>rna3219 ID=rna3219|Name=rna3219|organism=Nannochloropsis gaditana|type=CDS|length=1464bp|location=Sequence derived from alignment at CM002460.1:1029571..1030642- (Nannochloropsis gaditana)
TCAAAAATTCAGAGAGCAGGGCGGGTCATGATCTTTTCTCTTCAGAAAAA
CCTGAAGCGATCGAGCGTATGGAGGAAGAAAGGAAGGAGAAAATTCTTAC
AAAGGTTGCGTGAGAGGACGTATCGCAAATTGCATGAACTTAAAAGAAAA
TTTGTTTCGTTGTATTGTTTCCACAAACTGGAACGTTGTCGGTGTCCCAA
CTTTTCGTTGTAGGTCTTCGTCGGCACAACACTCATGCTTACAGTGGGCT
GTTTACCGTTCTGGATCAAGCGATGTTCTTGCAATATCGAAAAAGGGAGC
AGGGCGGTAGCGGAATGTTCTACACGATTATCAAGCGGATCCCAGGCAGC
CAGGGCACCAAGATGCTCAAAAATTCAGAGAGCAGGGCGGGTCATGATCT
TTTCTCTTCAGAAAAACCTGAAGCGATCGAGCGTATGGAGGAAGAAAGGA
AGGAGAAAATTCTTACAAAGGTTGCGTGAGAGGACGTATCGCAAATTGCA
TGAACTTAAAAGAAAATTTGTTTCGTTGTATTGTTTCCACAAACTGGAAC
GTTGTCGGTGTCCCAACTTTTCGTTGTAGGTCTTCGTCGGCACAACACTC
ATGCTTACAGTGGGCTGTTTACCGTTCTGGATCAAGCGATGTTCTTGCAA
TATCGAAAAAGGGAGCAGGGCGGTAGCGGAATGTTCTACACGATTATCAA
GCGGATCCCAGGCAGCCAGGGCACCAAGATGCTCAAAAATTCAGAGAGCA
GGGCGGGTCATGATCTTTTCTCTTCAGAAAAACCTGAAGCGATCGAGCGT
ATGGAGGAAGAAAGGAAGGAGAAAATTCTTACAAAGGTTGCGTGAGAGGA
CGTATCGCAAATTGCATGAACTTAAAAGAAAATTTGTTTCGTTGTATTGT
TTCCACAAACTGGAACGTTGTCGGTGTCCCAACTTTTCGTTGTAGGTCTT
CGTCGGCACAACACTCATGCTTACAGTGGGCTGTTTACCGTTCTGGATCA
AGCGATGTTCTTGCAATATCGAAAAAGGGAGCAGGGCGGTAGCGGAATGT
TCTACACGATTATCAAGCGGATCCCAGGCAGCCAGGGCACCAAGATGCTC
AAAAATTCAGAGAGCAGGGCGGGTCATGATCTTTTCTCTTCAGAAAAACC
TGAAGCGATCGAGCGTATGGAGGAAGAAAGGAAGGAGAAAATTCTTACAA
AGGTTGCGTGAGAGGACGTATCGCAAATTGCATGAACTTAAAAGAAAATT
TGTTTCGTTGTATTGTTTCCACAAACTGGAACGTTGTCGGTGTCCCAACT
TTTCGTTGTAGGTCTTCGTCGGCACAACACTCATGCTTACAGTGGGCTGT
TTACCGTTCTGGATCAAGCGATGTTCTTGCAATATCGAAAAAGGGAGCAG
GGCGGTAGCGGAATGTTCTACACGATTATCAAGCGGATCCCAGGCAGCCA
GGGCACCAAGATGC
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Synonyms
Publications