rna321, rna321 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna321
Unique Name	rna321
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3122
Alignment location	CM002455.1:794941..796887 +

Link to JBrowse

Properties


Property Name	Value
Product	nicotinate phosphoribosyltransferase-like protein
Orig transcript id	gnl\|cribi\|Naga_100003g176.1840.mrna
Orig protein id	gnl\|cribi\|Naga_100003g176.1840
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:794941..796887 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g176	gene310	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna321	rna321-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30323.1	cds321	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:794941..796887+
coding sequence from alignment at CM002455.1:794941..796887+

mRNA sequence

>rna321 ID=rna321|Name=rna321|organism=Nannochloropsis gaditana|type=mRNA|length=3122bp
GAAAAAAAAGAGAATATCACTTATTGCTTCATACGCCACCACCGCCAATT
TACACAAATATTGTTCGGAAAATGAATGATGTTATATTGTCGTAAATGAT
GGATTTCTCTTTTTTCACTCTTCTAACATTTAGATTCGGAAGCTTGGCTC
ATTCTCGTTCGTCATCCAAAACTTACACGCAGAAGAAGGGACTAACATGG
CGGTGGTAGGAATCGACCTGGGGAATCTCAACATCGTAATTGCGCAGGCT
CAACGTGGCGGTGTGGACGTAATTCTTAATGAAAACTCCAACCGACAGAA
CCCAAACTTGGTCTCTATTTCGGACAAGCAGCGTTTCGTTGGTGAACAGG
CCCTGACGCTGGCCAGGTCGAATTACAAGAACACCATCTACGCCACGAAG
CGTTTTATCGGAAAACAGTACGATGAACCAGACGTACAGAAAGAGATTCA
GTCACTGCCATTTAAGGTGGTGAAACTGCCCTCGGGGGGGGTCGGGTATG
AGGTGACATACGGCGGGGAGGTCACTGTGCTGTCACCCGAGCAGGTAGTG
GCCATGCTCTTCGCCAAAGTCAATGACATCGTCAAGGCCGGAAACAACAA
CGTGGCTATCGCCGAGGCTGTAGTAGCCATTCCTGGGTGGTTTACAGACG
CGCAACGTCGTGCCGTTTTGGATGCGGCGGACATCGCAGGTTTGAACGTG
CTGCGTCTCATGCACGAGTCCACCGCTGTAGCGCTTTCGTATGGCATCTA
CAAGTCTGTCCGCAACTTGTTCCACGAAAGCGACCCACAACATGTCCTCT
TTGTTGATTTGGGTCATTCGAATTTTTGTGCGTCCGTGGTGGCGTTCATC
CAGGGGAAGTTGATTGTCAAGTCAGCTGTTTACGACAGGAGTCTGGGAGG
GCGGGACTTTGACCAGCAGATCGTGGATTTCATGGCAGAGCAGTTCGTTT
CTAAGTACAAACAAGACCCCCGGGAGCACCCCAAGGCATTGCTGAAATTG
CAGGCGGCAGCAGAAAAGGCGAAGAAGACTCTGTCCCCAGCGGGCGTGTC
GGAGGCATCCATTTCGGTGGAGTGCGTTTTGGAGGACACGGACTTGAACA
CGGCCTTGTCATTGGAGGAATTCGAGAAGCGCGTACAGCCCCTTCTTGCT
CGTCTAGACGGTCCCATCATGCAGGCAATGGCCGAGGCGGGAGTATTGCC
CGAACAGCTCGCTAATGTCGAGGTAGTGGGCGGTGGCACGCGCGTGAACT
CTGTCAAATTGCACATCGCGGCCTTGCTGAAGCTGGACAAGAATAAGCTG
AACTATGGCTTGAGCACCACATTAAATGCAGACGAGGCCGTATCCCGAGG
CTGTGCTTTGCAAGCAGCCATTCTCTCGTCGCGCTTCCAGGTCAAACCCT
TCGAGGTTCTCGAGGCGTGTCCATATCCGATCAAGCTGAGTTGGGAGGAA
GACGCCTCGGCCACGCCTATGGACGAGGACGAAACAGGAACGGGGGGCGA
GGGTGATGACGGAGCCGTTAAAGCAGGAGATAATTCGGTGCTACTCTTCA
AGCGCAACGACAGGGTGCCCAATCAGCGCCGGATCACCTTCCGGAAGGAC
GCCGACTTCACCGTCACGGCGGCGTACGAGGACTCCGGTATGTCCCTTCT
GCCCCCTGGCACGAAGACGGAGATCGCATCCTTTCGAGTGGCGATTCCGA
AAGAGTACCAAGGGCTCGGGGCGAAGGCGAAGGTCCGTCTGAGTCTCGTG
TACAACTTGCACGGTGTCCTAGTGATGACGCAGGCCCAACTCATGGAGGA
GGTTCAGACGGTGCCGCCAGCCAGCGCAGGAGCGGAGACTGGGAAGGCGG
AGCCAGGCGAAGAGGTTAAGGCCGCCGAGGCTGCGGGGGACGGAGTGGGT
GGGGGGGACACAGCTGCTGCCTCGGCCATGGAAGAGGAAAAGAAAGAGGA
CCAGCCTGCGAAGCCGGAAACGTCTGCGGCGACAGCGACAAACGAGGCGG
CCAAACAGAAGAAGAAGTATAAGACTCATTCCCTAGGTGTGGTGACGAAG
GCGCCGGGCCTTGTCAAATCGGAGAAGGACGCGTTTGTAGAAATAGAGGC
CCAGATGGAACAACAGGACCGCATCATTCGTGAGACTGCCGACACACGCA
ACGCTCTGGAGTCCTACATTTATGATCTGAAAGCCAAATTGGGGGACAGC
CTTAAGCCGTACGTGCAAGACGAGGCCGCCACGGCCTTCAACGCCCAGCT
GGAGGAGGTGGAGGAGTGGCTGTACGGCGATGAGGGCTTCGACTCGACCA
AGTCCATCTACGCGGCGAAGCTCGCCACCCTCCGAGCACTCGGCGATCCC
ATCCAAGTGCGGATGGACGAGGCCAGCAAGCGGGAGCCGGCTCGCGTTGA
ATTCTGCCGGCAGCTTGAGGAGTACAAGACGCTTGTCAAGTCGACAGAGG
AGAAGTACAGCCACATCACGGATGAGGAACGCAATAAAGTCCGTGAGGAG
GTGAATGGAGCGGAGTCCTGGCTCTTCGACCTACTTGCCAAGCAGAACGA
GCTACCGTCCCACGTGGATCCAGTTTTGACGGTGGGTGCCATCAAGGAGC
GACAGAATGCTTTAGCACACGCCGTTTTGCCAGTAATGAACCGCCCAAAA
CCGCCGCCCCCGGCCCCAGCGCCAGCTCCTTCACCCTCTGCAACCAGTGG
TGTTGAAGACAAAACGGGCCCGGAAACCAAGGGCGATGGTGTCGAGGCAA
CACCCAAGGAGGGAGCGACGGAACCAACCGCCATGGATGAAGGTGGTGCA
ACCGCTGCAGAGAATGAACAGACTTCAATGGACACCGCCTCTTGATCGTC
GGGAGCGATGGGAAAAGGCTATCATGGTACCCTAGGGAACAGTTAACGTG
CCAATCTGTGTGCGGCGCACCTATGGTGCCTTCTGCATCCACGTCGATTC
TCATGGAGATTGGATCAGACGATGAAGGAAGACATCTTTGATTTAGGAAC
GTTGCACGCGTAGGTGATATAAATGTTCGTACGCAGATTACACTCGCCAA
ACTAGTCCTTTCTTTTCTTTTTTTGCTTTATGCTTTACTTGATGCTTTAT
TTTAGTCACAAGACAACCACAA

protein sequence of rna321

>rna321-protein ID=rna321-protein|Name=rna321|organism=Nannochloropsis gaditana|type=polypeptide|length=553bp
MTMADTGNDHDTAVGAKSSPKPWSNTPSPMSSYVRPMLTDMYQITMVFAY
WKQKRHEDRAVFEVFFRKTPFKGEFAIMAGLDEVLKYLANFRFSSEELDY
LRGQIPHAEEEFFTWLGTVDCSCVKVYALQDGTTCFGKEPLVRVEGSLAV
AQLLETTLLNLLNYPSLIATNAARHRLAVGPDKVLFEFGLRRAQGPDGAM
SASKYSYLGGFDGTSNVLAGHLLGIAISGTHAHAYVQSYVGLDSLQTPFL
RGQNLVEKALAYRSALGYSESNVGELAAFIAYAQSWPDNFLCLVDTYDTL
NSGVPNFMSVALALYDLGYSPLGIRLDSGDLAYLSKRIRKWFTEVASAYS
RPALQMLRIVASNDINEDVLYALSKQGHSIDAFGVGTHLVTCQAQPALGC
VYKLVEIDGQPRIKLSNEVEKVTLPSRKHLYRFFNENGVALVDFMTRDGE
PAPKEGQRLLCRHPFDSKKRAYVTPTTIVPLLSLVWDGQKGGIQPGASRT
LEESRTHVMGQLKEIREDVLRHINPTPYKVSVSEELHALLHQLWELNAPV
GQL

mRNA from alignment at CM002455.1:794941..796887+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna321 ID=rna321|Name=rna321|organism=Nannochloropsis gaditana|type=mRNA|length=1947bp|location=Sequence derived from alignment at CM002455.1:794941..796887+ (Nannochloropsis gaditana)
TAAAGGTTCTCACCTATATTATTTCACCATCTCTGCACGCTTAGATTCAT
AACCCGGAATCGCAGGACTTGACGGACGCAGTCTCACGGAGACAAGTGTC
CCTCCTCGTGCCAGGATCACCgaccctcatctccctcgtTGCCATATCCT
GCCCTCAAATTTACAAAGCTTCGTTATGACAATGGCAGACACGGGGAATG
ACCATGATACAGCCGTTGGCGCCAAATCATCACCGAAACCCTGGTCCAAC
ACTCCGTCCCCGATGTCTTCGTACGTTCGGCCCATGCTCACGGACATGTA
CCAGATAACGATGGTTTTCGCTTACTGGAAGCAAAAAAGACATGAGGACA
GAGCTGTCTTTGAAGTCTTCTTTCGAAAGACTCCGTTTAAAGGCGAGTTC
GCCATCATGGCTGGTCTGGACGAGGTTTTGAAATATCTTGCTAATTTCCG
CTTTTCGAGTGAGGAGCTTGATTATTTGCGGGGGCAAATCCCgcacgccg
aggaggaattTTTTACGTGGTTAGGCACCGTGGATTGTTCTTGTGTAAAG
GTGTACGCGCTCCAGGATGGAACAACTTGTTTTGGAAAAGAACCATTGGT
CCGCGTGGAGGGATCTCTCGCAGTTGCCCAGCTGCTCGAGACCACTCTCC
TCAACCTACTCAACTACCCTTCCCTCATCGCGACGAATGCTGCCCGCCAC
AGGCTAGCCGTTGGACCTGACAAAGTTCTTTTTGAATTTGGGTTGAGGCG
TGCGCAAGGTCCTGACGGCGCAATGTCGGCGTCCAAGTATTCCTACCTCG
GGGGCTTCGATGGCACCAGCAATGTTCTTGCGGGACATCTGCTGGGCATC
GCCATCAGCGGCACACACGCGCATGCGTACGTCCAGTCCTATGTAGGTTT
AGACAGCCTTCAGACACCCTTTTTGCGGGGGCAAAACCTGGTTGAAAAGG
CGCTGGCCTACCGATCCGCCCTTGGCTACTCCGAGAGCAACGTGGGCGAG
CTGGCAGCTTTTATCGCCTACGCCCAGTCCTGGCCAGATAATTTTCTATG
CCTCGTAGACACGTACGATACTCTTAATTCTGGCGTTCCCAACTTCATGA
GCGTTGCGTTGGCATTGTACGACCTGGGCTACTCGCCACTGGGCATACGG
CTGGACTCGGGAGACCTCGCCTACCTATCTAAACGGATAAGAAAATGGTT
CACTGAGGTGGCCTCAGCATATTCCCGCCCTGCATTACAGATGCTGCGAA
TTGTCGCCTCAAACGACATCAACGAGGACGTGCTATACGCTCTTTCAAAG
CAGGGACACTCCATCGATGCCTTTGGTGTAGGCACGCATCTTGTTACTTG
TCAGGCTCAGCCAGCCCTGGGTTGCGTCtacaagctggtggagatcGATG
GGCAGCCTCGGATCAAGTTATCGAatgaggtggagaaggtgacACTGCCA
AGCCGGAAGCACCTCTATCGTTTCTTCAACGAGAACGGTGTGGCGTTGGT
AGATTTTATGACCAGGGATGGCGAGCCTGCGCcaaaggagggacagcgtC
TTTTATGTAGGCATCCCTTTGATTCTAAGAAGCGCGCCTACGTGACACCC
ACGACGATAGTCCCTTTGCTGTCCCTCGTGTGGGACGGCCAGAAGGGTGG
CATTCAGCCGGGGGCGTCGCGGACATTGGAAGAGAGCCGCACCCATGTCA
TGGGCCAGCTCAAGGAGATTCGAGAAGATGTGCTCCGACACATCAACCCA
ACCCCATACAAAGTTTCAGTGAGCGAGGAGCTTCATGCCTTGTTACATCA
GCTTTGGGAACTTAACGCTCCGGTCGGTCAATTGTAAATGTGTTCGCTTG
AGAAAAAATTACAAGATGCAGAAATTGAAGTGTGTTACACAGATATTCCA
AGTGTATACGCGGTGGATATAAAAGAAATAACAACAAAATATATCTC

Coding sequence (CDS) from alignment at CM002455.1:794941..796887+

>rna321 ID=rna321|Name=rna321|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at CM002455.1:794941..796887+ (Nannochloropsis gaditana)
ATGACAATGGCAGACACGGGGAATGACCATGATACAGCCGTTGGCGCCAA
ATCATCACCGAAACCCTGGTCCAACACTCCGTCCCCGATGTCTTCGTACG
TTCGGCCCATGCTCACGGACATGTACCAGATAACGATGGTTTTCGCTTAC
TGGAAGCAAAAAAGACATGAGGACAGAGCTGTCTTTGAAGTCTTCTTTCG
AAAGACTCCGTTTAAAGGCGAGTTCGCCATCATGGCTGGTCTGGACGAGG
TTTTGAAATATCTTGCTAATTTCCGCTTTTCGAGTGAGGAGCTTGATTAT
TTGCGGGGGCAAATCCCgcacgccgaggaggaattTTTTACGTGGTTAGG
CACCGTGGATTGTTCTTGTGTAAAGGTGTACGCGCTCCAGGATGGAACAA
CTTGTTTTGGAAAAGAACCATTGGTCCGCGTGGAGGGATCTCTCGCAGTT
GCCCAGCTGCTCGAGACCACTCTCCTCAACCTACTCAACTACCCTTCCCT
CATCGCGACGAATGCTGCCCGCCACAGGCTAGCCGTTGGACCTGACAAAG
TTCTTTTTGAATTTGGGTTGAGGCGTGCGCAAGGTCCTGACGGCGCAATG
TCGGCGTCCAAGTATTCCTACCTCGGGGGCTTCGATGGCACCAGCAATGT
TCTTGCGGGACATCTGCTGGGCATCGCCATCAGCGGCACACACGCGCATG
CGTACGTCCAGTCCTATGTAGGTTTAGACAGCCTTCAGACACCCTTTTTG
CGGGGGCAAAACCTGGTTGAAAAGGCGCTGGCCTACCGATCCGCCCTTGG
CTACTCCGAGAGCAACGTGGGCGAGCTGGCAGCTTTTATCGCCTACGCCC
AGTCCTGGCCAGATAATTTTCTATGCCTCGTAGACACGTACGATACTCTT
AATTCTGGCGTTCCCAACTTCATGAGCGTTGCGTTGGCATTGTACGACCT
GGGCTACTCGCCACTGGGCATACGGCTGGACTCGGGAGACCTCGCCTACC
TATCTAAACGGATAAGAAAATGGTTCACTGAGGTGGCCTCAGCATATTCC
CGCCCTGCATTACAGATGCTGCGAATTGTCGCCTCAAACGACATCAACGA
GGACGTGCTATACGCTCTTTCAAAGCAGGGACACTCCATCGATGCCTTTG
GTGTAGGCACGCATCTTGTTACTTGTCAGGCTCAGCCAGCCCTGGGTTGC
GTCtacaagctggtggagatcGATGGGCAGCCTCGGATCAAGTTATCGAa
tgaggtggagaaggtgacACTGCCAAGCCGGAAGCACCTCTATCGTTTCT
TCAACGAGAACGGTGTGGCGTTGGTAGATTTTATGACCAGGGATGGCGAG
CCTGCGCcaaaggagggacagcgtCTTTTATGTAGGCATCCCTTTGATTC
TAAGAAGCGCGCCTACGTGACACCCACGACGATAGTCCCTTTGCTGTCCC
TCGTGTGGGACGGCCAGAAGGGTGGCATTCAGCCGGGGGCGTCGCGGACA
TTGGAAGAGAGCCGCACCCATGTCATGGGCCAGCTCAAGGAGATTCGAGA
AGATGTGCTCCGACACATCAACCCAACCCCATACAAAGTTTCAGTGAGCG
AGGAGCTTCATGCCTTGTTACATCAGCTTTGGGAACTTAACGCTCCGGTC
GGTCAATTGTAA

Synonyms

Publications