rna3208, rna3208 (mRNA) Nannochloropsis gaditana

Overview
Namerna3208
Unique Namerna3208
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1575
Alignment locationCM002460.1:1002161..1002376 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100174g12.7288.mrna
Orig protein idgnl|cribi|Naga_100174g12.7288
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1002161..1002376 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100174g12gene3086Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3208rna3208-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27473.1cds3200Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3208 ID=rna3208|Name=rna3208|organism=Nannochloropsis gaditana|type=mRNA|length=1575bp
ATGTATGGCTCCAAAATGTCAGATAGTACATTCAACGCGTCCTCCTCTGT
GCAGATGCCTCCCTCTGGAACCCATACCGAGTGGACTGCCGATAAGTGTT
ATCAGGACACCATGGACATACCCACCGTTTTACCTATGGCACATCTTAGA
CCACGAGTCTCAAAAACAGCCGCAATCACCGCAGAAATGGCACCTCCTCC
TGTGGCGCCTAGTCTCGCACCAAGGCGAACGTCCCCATTACTTATCAGCG
CGTATGCCCGTATGCGCAAAAGCGTGAGTGAAGGATGCATGGCGGCAAAG
ATAAGCGGCCCTTCTTCTCACATCACGCATGACATCCGTCGCCGCATTCG
GCACCAGCAGCACCATCCTTATCCTTCGTCCCCACCTCCTACTTCTTGTG
GGATCGAGAAAGGGGACAGGCCGATACTGGAAGCGGGGAGGCCGTGCTCC
AAGGGGCCCTGCGAATCCATGAAAGACCAGCGTCACGCGAACCACATGTA
CACATACGGTTCCAGCTTGTCAATTCTTGGGGCCACATCCACAGGACTGC
CCGCGTCGCTGAGCCTGGGCGTCAGGCACGACGCAGGAGGGGCGCGGCCA
AGCCACGAAGGCATCCCCAGGAGTCCGAAGCGGCCTGCCTCGACAGAGAG
ACAACACGCCGAAGCAAGCCACGCCGAAGAAGGGTCCTCACAAATGAACG
AGACTACGCATATGCAAGACGACGGGGCTGCCTCAACCCTAAGTCACCCG
ATTCAACCGGCAGCGCACGGAGGGGGAGATATGTGCCCCTCCGACCACGA
CAGGCAGGGAGGGGCAATCGATGTCCGAGGAACATGCACGCACACGGCAG
CCCATCTATTCGCGGCGGCTTCCAAGTTTGCTGCCGCCAAGGCGGCCCGA
CGGGTGCTTTCTACGGGGGACGTAAGCGATCCCAAGCTCCTGCCCCCTGT
GACGCTCGGCCCTGCCCGGCTCTGGTATCAATACCGGGGAGATCGAAACG
GTCTCGCCATGAGTAGGTCCTTCGGGGACACGGCGGTGCACGCGGTGGGA
GGAACGAGTCAACCCGAGGTGATGGAGTATCTCGTGAAGGGCGGGCGGAG
CGAGGGAGGGAAAACATGTATCGGGAGGGAGGAGGAGGAGGGAGGGGAGG
GCGTGATGCATGAGAAAGGGATGGAGGTCGAGGACGAGGAGGACGCATTC
CTGATTCTTGCGAGCGATGGTCTGTGGGACGTTGTAGATAACCAAGAGGC
GGTGGAGATTGTAGATAGGTATGCTCGAGCCTCCTTTCGAGCGGGGGAGA
GGAGGGAGGGAGGAGGAAAGGTTGGAGGATGGCAGCCCAGGAAGGCAGCA
GCAGCCTTGGTCAGCTTCGCCAGAAGCCGTTGGGAATATTTGTCGCCGCT
GTCCATCGATGACATTACTTGTGTGGTCGTGAGACTGCCATCCCCCAGAG
AAAGAAGAAGGATGAAAGTCCACTCGGGAGATCCTACTTGTTTGAAATTC
ATCAGTAAACTGAGAGGTATTTCTAATAGAAACCTCGATAGCGGCGGTAC
AGGAGAAATTGACACAAGGTGCTAG
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protein sequence of rna3208

>rna3208-protein ID=rna3208-protein|Name=rna3208|organism=Nannochloropsis gaditana|type=polypeptide|length=71bp
MRKVRQAVAREEVGSGGGRIEGLEESFVHVCVRMTSNAEVRGRKKILVDT
FCSKGQDGRRLTYENCTSKDE
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mRNA from alignment at CM002460.1:1002161..1002376+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3208 ID=rna3208|Name=rna3208|organism=Nannochloropsis gaditana|type=mRNA|length=216bp|location=Sequence derived from alignment at CM002460.1:1002161..1002376+ (Nannochloropsis gaditana)
ATGCGAAAAGTGCGGCAAGCCGTTGCTCGAGAAGAGGTAGGatcaggagg
aggccgtaTAGAGGGCCTGGAAGAAAGCTTCGTCCATGTTTGTGTTCGCA
TGACCAGCAACGCAGAAgtgcgtgggaggaagaaaatcctTGTGGACACG
TTTTGTTCCAAAGGACAGGATGGAAGACGGCTCACTTACGAAAACTGCAC
GAGCAAAGACGAATGA
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Coding sequence (CDS) from alignment at CM002460.1:1002161..1002376+

>rna3208 ID=rna3208|Name=rna3208|organism=Nannochloropsis gaditana|type=CDS|length=216bp|location=Sequence derived from alignment at CM002460.1:1002161..1002376+ (Nannochloropsis gaditana)
ATGCGAAAAGTGCGGCAAGCCGTTGCTCGAGAAGAGGTAGGatcaggagg
aggccgtaTAGAGGGCCTGGAAGAAAGCTTCGTCCATGTTTGTGTTCGCA
TGACCAGCAACGCAGAAgtgcgtgggaggaagaaaatcctTGTGGACACG
TTTTGTTCCAAAGGACAGGATGGAAGACGGCTCACTTACGAAAACTGCAC
GAGCAAAGACGAATGA
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Synonyms
Publications