rna3206, rna3206 (mRNA) Nannochloropsis gaditana

Overview
Namerna3206
Unique Namerna3206
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1158
Alignment locationCM002460.1:996965..998769 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100174g10.7293.mrna
Orig protein idgnl|cribi|Naga_100174g10.7293
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:996965..998769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100174g10gene3084Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3206rna3206-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27478.1cds3198Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3206 ID=rna3206|Name=rna3206|organism=Nannochloropsis gaditana|type=mRNA|length=1158bp
ATGGACAGGACTTATACTACCTGGGCACAATGGGTTTTAACCTCCCAGTT
TGCTTCCTCTTCGATAGAGGTTGAGGCCAGCTTAGCACCCTTCTCAGACG
TATCGGTTCAAAGCATGGAGTGGGAAATGAGTTTCACAGCTCAAAAGCTG
ATGCAAGCGCGGCGGATGCAGGAATTGCAGATGGTGGAGCGAAACATCGC
TATAGACAGGGACGGAGGAGGGAGCAATAAAGACAAGGACTTGCATGATA
GGTTAAGCGGAAGTGACAGCGAGGAGTACAACGACGAAGAATCAGCAATT
TCACTACTACGTGGAAGAGCAAAGCATATTTATCCTGCGCGGAGAGCGGG
TGGAAGCAGGGAAAATGGCCCCTCTAGGGAAAATCGGGTTGAGCGCGGAA
GGGAACGGCCACCCTGGGTACAGCGCCCTCTCTCCCTTTTCCTGGGGGCC
TGCTTCCCCTGCCTTCTCCTTGCACGTGCCGCAAGTCTACTGGCGCGAAG
CCCGATGAATGCAGGTAACAGGGGCAAGTCGCCGTGTAACGGCTTAGACA
TGGATGGGTGGAAAACCTGTCTTTCCGCGGCCGTCGTGGCCATGGCGTGC
CCGTTGCCCTGCCTGTGGCCCTCTTTGTGGTGGTGGAGGAAGCGACAGCG
CCACCGGATCCTCCAGCGCTTCTCTCACTTCCCCGACCCTGTCCCCACGT
CTTCCTCCGGCACATCCGGGTCAGATGGCCGGAAGATGGGCGTGCTAACG
GCCTGTCAGCTGTGTGCCCCCTGCCCTCTGGTAAGCGAAGTCGCCTTCTT
GGAAGAGGTAGAGAGACTCCAGAGGGAGAAGGAGATGCTCTCAGGCAGCA
CGGGGACGGAAGGTGACGACGAGAACGAGTGTCTGGATCCAGGCAAGTCC
ATGGCAACGTGCAACCTGAGGAGCGACAGTGCCTTGAGAGATTCGCCCGC
GAAGCCTTTCCCTCCGACCCCCGCCGAGGGAAAAAAGGAAAATGGGGGTA
AGCGGAGGGATTCTGTGGCACAATGGCAGGCGTTTGAGAGCTGGGATCTC
CGCCCGGTGGGTGGCGGGACCACCGCCGTCGCGGCGACTGGACCGAGCCT
GCGGGCGGTGGAAAACGAGAAGGATACCCGGACAAATTGGGATAGGGGGA
AGGAGTGA
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protein sequence of rna3206

>rna3206-protein ID=rna3206-protein|Name=rna3206|organism=Nannochloropsis gaditana|type=polypeptide|length=306bp
MLLNILAIRQSMYNSGNSATMPPAYQQEIRRVDPTADLPMIVARGAVRLA
KKHYVISSMWVAGLIILTFFRGLTVPDENLTKYNQAVKSIDFNKLYRLQN
DAWVAEEQFRHSKGWFSCDHVCQANKEVWNRALAKLQKLEREQEKKQREA
NKHLGLFSTYGVEECKQLFWKSFKWGKNFGQRQTMFDMLFMGFRAMGRDE
GLLEYILQILMHFLLNMAMGLFVALTGFTFSLWSFIRAYSPDLVTGLFFF
AGAVISATAMVATYLTLLYGTAGATVYVGVKALLNNANRLEQGGDARRPR
RNLHYE
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mRNA from alignment at CM002460.1:996965..998769+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3206 ID=rna3206|Name=rna3206|organism=Nannochloropsis gaditana|type=mRNA|length=1805bp|location=Sequence derived from alignment at CM002460.1:996965..998769+ (Nannochloropsis gaditana)
TGGTCTATCGGTGTGTGCATATCAAAGTTTTAATCCATTAAAAAATAAGT GTGAGTCCATGTTCCGTTCGCAAAGAGCACTCGCTGAACACTCATCAAGA TGCACGTAGTCAAGACGCGCCAGGTAATTGAAGGGAATAAAGCATGTGCT TTCTTCCGCCCAGGAGGAAATGCCATACCATTGTGCCCAGGTAGTATAAG TCCTGTCCATGCGCAGGCTACTGCTTGAGAAGGGACTCCTTACCTTCACG ACGACCCACACGGTCTCACTAGCATCTCTCCCGCTTGCCCTCCACTTTGC GTCCCCATGTTGCTAAACATATTGGCTATTCGACAGAGCATGTACAATTC TGGCAACAGCGCCACCATGCCTCCGGCATACCAGCAGGAGATACGTAGGG TGGATCCTACCGCGGACTTACCCATGATCGTGGCACGGGTAAGGCTTTTT TCCTCGGCAGTGTGCCTGGcggtcctccctcttgaagTTGTGGGTCTCAG ACCACCGCCCGTCTGACACCGCTTTTTTATGCTCGCCCAGGGAGCTGTCC GGCTGGCGAAGAAACACTATGTTATTTCATCCATGTGGGTGGCGGGTCTC ATCATTTTGACCTTTTTTCGAGGCCTGACTGTCCCGGATGAAAACTTGAC GAAATACAATCAAGCTGTCAAGTCGATCGACTTCAATAAGCTCTACAGGC TTCAAAATGATGCATGGGTAGCGGAGGAGCAGTTTCGTCATAGCAAAGGC TGGTTTTCTTGCGATCATGTGTGCCAGGTAGGTCCAGAGCGCTTTGTGGG GGTGCACCCGTCCGGTAAATCTctggacggagggcgggaaccTAGCCGAA GATTATCAAGAAAGTGTCGTACTGGCGCTCTCATCCCTTAACTGTTGATA TTTGTTTTACCTGAAGGCCAATAAGGAGGTGTGGAACAGGGCCCTGGCCA AGCTGCAGAAgctggaaagggagcaagaaaagaagcaaCGCGAGGCCAAC AAGCACCTTGGTCTTTTCTCTACATACGGCGTGGAAGAATGCAAACAGCT CTTCTGGAAATCATTTAAATGGGGCAAGAATTTTGGCCAGCGTCAGACCA TGTTTGATATGCTTTTTATGGGCTTTCGCGCCATGGGTCGTGACGAGGGT TTGCTGGAGTACATTTTGCAGgtaaagggaagggagggcgataCGGTTGC GGTGTAAGGCAATCTGTAAATCTGTCCTATGGAAGCTAGTTGCACGAACG TGCACAGGGCGCAATCTCATGATGctctcgtcctcatccccgACGCACTA GATATTGATGCACTTCCTGCTGAACATGGCCATGGGTCTCTTCGTCGCCT TGACCGGCTTCACTTTTTCCCTCTGGTCCTTCATCCGTGCTTATTCTCCG GACCTTGTGACCggccttttctttttcgcggGGGCTGTCATTAGCGCCAC TGCAATGGTAGCTACCTATCTCACCCTGTTGTATGGAACGGCGGGTGCGA CCGTTTATGTGGGTGTCAAGGCCCTCTTAAACAACGCCAACCGTCtcgag cagggcggggatGCGAGGAGGCCACGGCGGAATTTGCATTATGAGTAAGG AATATGCCACGTCGGATGCAAGAATTTGGTAGAATTTACGTTGATGATGG AAGGCTTGTTAATAACATACCGTCTAACACCTTTTCTCAGACGTTGTTTT CCCGCACTGAGTTTCTCTACATTTGTGCTGCTTTCAAATGTGCGACCAAA CCAAGTTCATGCTTGACATTTATCTTGTCATACATCTACTTCTGCGCAGC Aaatc
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Coding sequence (CDS) from alignment at CM002460.1:996965..998769+

>rna3206 ID=rna3206|Name=rna3206|organism=Nannochloropsis gaditana|type=CDS|length=3684bp|location=Sequence derived from alignment at CM002460.1:996965..998769+ (Nannochloropsis gaditana)
ATGTTGCTAAACATATTGGCTATTCGACAGAGCATGTACAATTCTGGCAA
CAGCGCCACCATGCCTCCGGCATACCAGCAGGAGATACGTAGGGTGGATC
CTACCGCGGACTTACCCATGATCGTGGCACGGGGAGCTGTCCGGCTGGCG
AAGAAACACTATGTTATTTCATCCATGTGGGTGGCGGGTCTCATCATTTT
GACCTTTTTTCGAGGCCTGACTGTCCCGGATGAAAACTTGACGAAATACA
ATCAAGCTGTCAAGTCGATCGACTTCAATAAGCTCTACAGGCTTCAAAAT
GATGCATGGGTAGCGGAGGAGCAGTTTCGTCATAGCAAAGGCTGGTTTTC
TTGCGATCATGTGTGCCAGGCCAATAAGGAGGTGTGGAACAGGGCCCTGG
CCAAGCTGCAGAAgctggaaagggagcaagaaaagaagcaaCGCGAGGCC
AACAAGCACCTTGGTCTTTTCTCTACATACGGCGTGGAAGAATGCAAACA
GCTCTTCTGGAAATCATTTAAATGGGGCAAGAATTTTGGCCAGCGTCAGA
CCATGTTTGATATGCTTTTTATGGGCTTTCGCGCCATGGGTCGTGACGAG
GGTTTGCTGGAGTACATTTTGCAGATATTGATGCACTTCCTGCTGAACAT
GGCCATGGGTCTCTTCGTCGCCTTGACCGGCTTCACTTTTTCCCTCTGGT
CCTTCATCCGTGCTTATTCTCCGGACCTTGTGACCggccttttctttttc
gcggGGGCTGTCATTAGCGCCACTGCAATGGTAGCTACCTATCTCACCCT
GTTGTATGGAACGGCGGGTGCGACCGTTTATGTGGGTGTCAAGGCCCTCT
TAAACAACGCCAACCGTCtcgagcagggcggggatGCGAGGAGGCCACGG
CGGAATTTGCATTATGAGTAAATGTTGCTAAACATATTGGCTATTCGACA
GAGCATGTACAATTCTGGCAACAGCGCCACCATGCCTCCGGCATACCAGC
AGGAGATACGTAGGGTGGATCCTACCGCGGACTTACCCATGATCGTGGCA
CGGGGAGCTGTCCGGCTGGCGAAGAAACACTATGTTATTTCATCCATGTG
GGTGGCGGGTCTCATCATTTTGACCTTTTTTCGAGGCCTGACTGTCCCGG
ATGAAAACTTGACGAAATACAATCAAGCTGTCAAGTCGATCGACTTCAAT
AAGCTCTACAGGCTTCAAAATGATGCATGGGTAGCGGAGGAGCAGTTTCG
TCATAGCAAAGGCTGGTTTTCTTGCGATCATGTGTGCCAGGCCAATAAGG
AGGTGTGGAACAGGGCCCTGGCCAAGCTGCAGAAgctggaaagggagcaa
gaaaagaagcaaCGCGAGGCCAACAAGCACCTTGGTCTTTTCTCTACATA
CGGCGTGGAAGAATGCAAACAGCTCTTCTGGAAATCATTTAAATGGGGCA
AGAATTTTGGCCAGCGTCAGACCATGTTTGATATGCTTTTTATGGGCTTT
CGCGCCATGGGTCGTGACGAGGGTTTGCTGGAGTACATTTTGCAGATATT
GATGCACTTCCTGCTGAACATGGCCATGGGTCTCTTCGTCGCCTTGACCG
GCTTCACTTTTTCCCTCTGGTCCTTCATCCGTGCTTATTCTCCGGACCTT
GTGACCggccttttctttttcgcggGGGCTGTCATTAGCGCCACTGCAAT
GGTAGCTACCTATCTCACCCTGTTGTATGGAACGGCGGGTGCGACCGTTT
ATGTGGGTGTCAAGGCCCTCTTAAACAACGCCAACCGTCtcgagcagggc
ggggatGCGAGGAGGCCACGGCGGAATTTGCATTATGAGTAAATGTTGCT
AAACATATTGGCTATTCGACAGAGCATGTACAATTCTGGCAACAGCGCCA
CCATGCCTCCGGCATACCAGCAGGAGATACGTAGGGTGGATCCTACCGCG
GACTTACCCATGATCGTGGCACGGGGAGCTGTCCGGCTGGCGAAGAAACA
CTATGTTATTTCATCCATGTGGGTGGCGGGTCTCATCATTTTGACCTTTT
TTCGAGGCCTGACTGTCCCGGATGAAAACTTGACGAAATACAATCAAGCT
GTCAAGTCGATCGACTTCAATAAGCTCTACAGGCTTCAAAATGATGCATG
GGTAGCGGAGGAGCAGTTTCGTCATAGCAAAGGCTGGTTTTCTTGCGATC
ATGTGTGCCAGGCCAATAAGGAGGTGTGGAACAGGGCCCTGGCCAAGCTG
CAGAAgctggaaagggagcaagaaaagaagcaaCGCGAGGCCAACAAGCA
CCTTGGTCTTTTCTCTACATACGGCGTGGAAGAATGCAAACAGCTCTTCT
GGAAATCATTTAAATGGGGCAAGAATTTTGGCCAGCGTCAGACCATGTTT
GATATGCTTTTTATGGGCTTTCGCGCCATGGGTCGTGACGAGGGTTTGCT
GGAGTACATTTTGCAGATATTGATGCACTTCCTGCTGAACATGGCCATGG
GTCTCTTCGTCGCCTTGACCGGCTTCACTTTTTCCCTCTGGTCCTTCATC
CGTGCTTATTCTCCGGACCTTGTGACCggccttttctttttcgcggGGGC
TGTCATTAGCGCCACTGCAATGGTAGCTACCTATCTCACCCTGTTGTATG
GAACGGCGGGTGCGACCGTTTATGTGGGTGTCAAGGCCCTCTTAAACAAC
GCCAACCGTCtcgagcagggcggggatGCGAGGAGGCCACGGCGGAATTT
GCATTATGAGTAAATGTTGCTAAACATATTGGCTATTCGACAGAGCATGT
ACAATTCTGGCAACAGCGCCACCATGCCTCCGGCATACCAGCAGGAGATA
CGTAGGGTGGATCCTACCGCGGACTTACCCATGATCGTGGCACGGGGAGC
TGTCCGGCTGGCGAAGAAACACTATGTTATTTCATCCATGTGGGTGGCGG
GTCTCATCATTTTGACCTTTTTTCGAGGCCTGACTGTCCCGGATGAAAAC
TTGACGAAATACAATCAAGCTGTCAAGTCGATCGACTTCAATAAGCTCTA
CAGGCTTCAAAATGATGCATGGGTAGCGGAGGAGCAGTTTCGTCATAGCA
AAGGCTGGTTTTCTTGCGATCATGTGTGCCAGGCCAATAAGGAGGTGTGG
AACAGGGCCCTGGCCAAGCTGCAGAAgctggaaagggagcaagaaaagaa
gcaaCGCGAGGCCAACAAGCACCTTGGTCTTTTCTCTACATACGGCGTGG
AAGAATGCAAACAGCTCTTCTGGAAATCATTTAAATGGGGCAAGAATTTT
GGCCAGCGTCAGACCATGTTTGATATGCTTTTTATGGGCTTTCGCGCCAT
GGGTCGTGACGAGGGTTTGCTGGAGTACATTTTGCAGATATTGATGCACT
TCCTGCTGAACATGGCCATGGGTCTCTTCGTCGCCTTGACCGGCTTCACT
TTTTCCCTCTGGTCCTTCATCCGTGCTTATTCTCCGGACCTTGTGACCgg
ccttttctttttcgcggGGGCTGTCATTAGCGCCACTGCAATGGTAGCTA
CCTATCTCACCCTGTTGTATGGAACGGCGGGTGCGACCGTTTATGTGGGT
GTCAAGGCCCTCTTAAACAACGCCAACCGTCtcgagcagggcggggatGC
GAGGAGGCCACGGCGGAATTTGCATTATGAGTAA
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Synonyms
Publications