rna320, rna320 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna320
Unique Name	rna320
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2397
Alignment location	CM002455.1:790892..794354 +

Link to JBrowse

Properties


Property Name	Value
Product	heat shock protein 70
Orig transcript id	gnl\|cribi\|Naga_100003g177.1824.mrna
Orig protein id	gnl\|cribi\|Naga_100003g177.1824
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:790892..794354 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100003g177	gene309	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna320	rna320-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30307.1	cds320	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:790892..794354+
coding sequence from alignment at CM002455.1:790892..794354+

mRNA sequence

>rna320 ID=rna320|Name=rna320|organism=Nannochloropsis gaditana|type=mRNA|length=2397bp
ATAGGCGAGATATTCCACGGAAATGGAGGCTGCACCGCATATAAGAGGAT
CTCGAGGTCCTTTCAAGTCGGCTATCATCGCCTCATCATTCCTCTTCTTT
GCTTGTGGAGCTTCCATTTGGCCTCCGCGAGGCTTCAGGGGCTCGAGCAC
ACATCGTGCAAACACATGTGGTTTTTTTCCACCATTAAGACTTTTGAAAA
CGTCGCTTTCCGCGGGTACTATCGTTCCCTCGTCTGCAGATTGCTTCTTC
AGACGTCGCGGTGGGGCAACCTCTCCCACTTCCTTTTCAGGCAAAACTCA
AAGTCCCACCACGAATCCCAAACCGACTTTGTCTGCGTCACCTTCTCCAA
CATCTGCATCATCGATTGCCTTGAAAATGAATACAGTGTCGAAGGAAGAA
GACGATATTTTCAAGACTCTAATAGACTTGGGTCAGGATCATCTCTTCCA
AGATTGGCCCCCTGCTGGCGAAGCAGATGATGCGAAGCACAATTTCTTTC
TGCAGGTTCAGCAGCTAGACAAAAGCTATCCAGGTGGGATAATGGCCTAC
ATACACAAGGCACGAGATTTGCTGAGGGCTGCTGTGGCACAAGAGAATCC
ATTTGAGGGCATGACGCCTTCAGTACCGGACGGTCAGACGTTGACGTACG
GAAGTAGCGAGTTTGCAGCGGCCGAAGAGAAAGGCCTCCGGGAAGCTGCG
CACGCCACCTTTGTGGTGGTGGCTGGTGGATTAGGAGAAAGACTTGGATA
CGGGGGGATCAAGCTGGCCCTGCCGGTGGAATCTACCACTAGCACGACCT
ATTTGGAATTCTATGCCAGCTACATTTTGGCTCTGCAAGCTCGCGCCCGC
CATCGCACAGGTGATGCGTCCTTGCTTCTGCCTTTGGCCATCATGACGTC
AGATGACACGGATTCCCAGACCCGAGAGCTTTTGGAACGTAATAATAACT
TCGGAATGCAGGATGGTCAGATGACAATCATCAAACAGGACAAAGTACCG
GCTTTACAGGATTCGAACGCCCGTTTGGCGTCGGCAGACACCTACACTCT
TGACACGAAGCCGCACGGGCACGGAGATGTGCACCATCTGCTGCTTCGCA
GCGGCCTGACGGCGCAATGGCTGGCGGCCGGTAAAAAATGGGTCTTCTTC
CTGCAGGACACCAACGCTCTTGTAGTTAACTCCGTCCTCCCCGCCCTGGC
CGTAAGTGCCACTCACGGGTACGACATGAACTCTATCTGCATTCCTCGCA
AAGCCGGCGAGGCCTCTGGGGCAATCACTAAGCTAACAAACCGGAACGGC
GACTCCATCATCATCAATGTGGAGTACAATCAGCTTGACCCCCTTTTGCG
CGCGACGACCTATCCGGACGGCGACACAAATGACCAAAGCACGGGCTGCT
CCCCATTTCCTGGCAATGCGAACAACATCGTCATGTATCTGCCCAACTAC
CATCGTGTTTTGCAAGGCGAGGCCCAGGGCGTTGTAGAGGAGTTCGTCAA
CCCTAAGTTCAAGGACAGCTCCCGAACCGCTTTCACCAAGCCCACACGAC
TGGAGTGCATGATGCAAGATTTTCCCAAGCTTTTGGCAAAAGAAATAGGA
GGCAAAGCACGCGTTGGGTTCACTAGCTTCGAGAAGTGGTTGTCTTTCTC
GCCGGCCAAGAACAGTTTGGAGGCGGGAGCCAAGGCCTTTGCCGCCACGG
GGGTGCCGCCTGCAACGGCCTCAAGTGCAGAGATGGATTTTTATCGAGCA
CATCTCTTGAAAATTCGCGCTGTTTCTGGTTCCCGCGCAGCTGCTAACCT
ACTCGATGGCCCGATTTCAAGCTTCGCCGATATCCCACTTGAGACTGGTC
CACGCATAATTGTCACTCCCGCCGTGGCTGTCACCTCAAAAGAGTTGCAC
GACAGGGTAGGAAAAGGGCGTATCAGTGTTACGGGAACGAGTACGCTGGT
TTTAGATGGCGCTGGTATCTCCGTGGAGTCCTTGGATTTGGATGGCACCT
TCATTCTGAGAGCTGGACCACGGGCCAGGGTCACCGTCCGAGACGCGAAG
GTGCGAAACGCAGGTTGGTGCCTCGCACCGGCAGGACCGGATGCCGTGGA
GGAAGAGCGCATTCGCGGCTTCCGAGTGATTAAAGACAACGGAGTTGTGG
TTGATTTGGGAATGGATGCAGAAGGAGAGTTCTTGGTGACTGGCAACGGC
GAGGTGGTGAAGCAATGATATCACGTTTTTAAATGTCTTGAGAGCTAAAA
CGAAAACAGTATTTGATGTTTCCCGCGCTGCTCACTATTCAGTGAGAGGA
ACACTCTGAAAAATAGATAGACAAGTGTCTTTTTTGTATTTCATTACTTT
GTTTGAGAAGAAACATAATTCGAAATTTGGAAGTATCCTGCAATTCA

protein sequence of rna320

>rna320-protein ID=rna320-protein|Name=rna320|organism=Nannochloropsis gaditana|type=polypeptide|length=882bp
MAVVGIDLGNLNIVIAQAQRGGVDVILNENSNRQNPNLVSISDKQRFVGE
QALTLARSNYKNTIYATKRFIGKQYDEPDVQKEIQSLPFKVVKLPSGGVG
YEVTYGGEVTVLSPEQVVAMLFAKVNDIVKAGNNNVAIAEAVVAIPGWFT
DAQRRAVLDAADIAGLNVLRLMHESTAVALSYGIYKSVRNLFHESDPQHV
LFVDLGHSNFCASVVAFIQGKLIVKSAVYDRSLGGRDFDQQIVDFMAEQF
VSKYKQDPREHPKALLKLQAAAEKAKKTLSPAGVSEASISVECVLEDTDL
NTALSLEEFEKRVQPLLARLDGPIMQAMAEAGVLPEQLANVEVVGGGTRV
NSVKLHIAALLKLDKNKLNYGLSTTLNADEAVSRGCALQAAILSSRFQVK
PFEVLEACPYPIKLSWEEDASATPMDEDETGTGGEGDDGAVKAGDNSVLL
FKRNDRVPNQRRITFRKDADFTVTAAYEDSGMSLLPPGTKTEIASFRVAI
PKEYQGLGAKAKVRLSLVYNLHGVLVMTQAQLMEEVQTVPPASAGAETGK
AEPGEEVKAAEAAGDGVGGGDTAAASAMEEEKKEDQPAKPETSAATATNE
AAKQKKKYKTHSLGVVTKAPGLVKSEKDAFVEIEAQMEQQDRIIRETADT
RNALESYIYDLKAKLGDSLKPYVQDEAATAFNAQLEEVEEWLYGDEGFDS
TKSIYAAKLATLRALGDPIQVRMDEASKREPARVEFCRQLEEYKTLVKST
EEKYSHITDEERNKVREEVNGAESWLFDLLAKQNELPSHVDPVLTVGAIK
ERQNALAHAVLPVMNRPKPPPPAPAPAPSPSATSGVEDKTGPETKGDGVE
ATPKEGATEPTAMDEGGATAAENEQTSMDTAS

mRNA from alignment at CM002455.1:790892..794354+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna320 ID=rna320|Name=rna320|organism=Nannochloropsis gaditana|type=mRNA|length=3463bp|location=Sequence derived from alignment at CM002455.1:790892..794354+ (Nannochloropsis gaditana)
gaaaaaaaagagaataTCACTTATTGCTTCATacgccaccaccgccaatT
TACACAAATATTGTTCGGAAAATGAATGATGTTATATTGTCGTAAATGAT
GgatttctcttttttcactCTTCTAACATTTAGATTCGGAAGCTTGGCTC
ATTCTCGTTCGTCATCCAAAACTTACACGCAGAAGAAGGGGTAGGATCTT
TTAAGCTCCGTGtgttccttttttttctatGGTGATTACAAAGTCTCTCC
GATGGCACGTTGTTTGTGGAAACTGAGTGCGAAATAAACTTGTGCGTGGT
TACTTGCCGACAGAATGGCGTGTCCTTATTCGGCCTGGTGACCGTCCCGG
TCGTAGAACGTTCTgtctcccacccttccttccaagGCCTGAAGTCGTTT
TGTGACCGTAATTTTCAATTTGCGTGCAAGGCCTACAACTGAGGGCTTTA
TCTATGCGCATTTGACATGGTGCTGCTTATCAACGCTTATCCTGTCCGGC
CCCATTTCCACGCAACATCATTTTTTGACAGACTAACATGGCGGTGGTAG
GAATCGACCTGGGGAATCTCAACATCGTAATTGCGCAGGCTCAACGTGGC
GGTGTGGACGTAATTCTTAATGAAAACTCCAACCGACAGAACCCAAACTT
GGTCTCTATTTCGGACAAGCAGCGTTTCGTTGGTGAACAGGCCCTGACGC
TGGCCAGGTCGAATTACAAGAACACCATCTACGCCACGAAGCGTTTTATC
GGAAAACAGTACGATGAACCAGACGTACAGAAAGAGATTCAGTCACTGCC
ATTTAAGGTGGTGAAACTGCCCTCGGGGGGGGTCGGGTATGAGGTGACAT
ACGGCGGGGAGGTCACTGTGCTGTCACCCGAGCAGGTAGTGGCCATGCTC
TTCGCCAAAGTCAATGACATCGTCAAGGCCGGAAACAACAACGTGGCTAT
CGCCGAGGCTGTAGTAGCCATTCCTGGGTGGTTTACAGACGCGCAACGTC
GTGCCGTTTTGGATGCGGCGGACATCGCAGGTTTGAACGTGCTGCGTCTC
ATGCACGAGTCCACCGCTGTAGCGCTTTCGTATGGCATCTACAAGTCTGT
CCGCAACTTGTTCCACGAAAGCGACCCACAACATGTCCTCTTTGTTGATT
TGGGTCATTCGAATTTTTGTGCGTCCGTGGTGGCGTTCATCCAGGGGAAG
TTGATTGTCAAGTCAGCTGTTTACGACAGGAgtctgggagggcgggactt
TGACCAGCAGATCGTGGATTTCATGGCAGAGCAGTTCGTTTCTAAGTACA
AACAAGACCCCCGGGAGCACCCCAAGGCATTGCTGAAATTGCAGGCGGCA
GCAGAAAAGGCGAAGAAGACTCTGTCCCCAGCGGGCGTGTCGGAGGCATC
CATTTCGGTGGAGTGCGTTTTGGAGGACACGGACTTGAACACGGCCTTGT
CATTGGAGGAATTCGAGAAGCGCGTACAGCCCCTTCTTGCTCGTCTAGAC
GGTCCCATCATGCAGGCAATGGCCGAGGCGGGAGTATTGCCCGAACAGCT
CGCTAATGTCGAGGTAGTGGGCGGTGGCACGCGCGTGAACTCTGTCAAAT
TGCACATCGCGGCCTTGCTGAAGCTGGACAAGAATAAGCTGAACTATGGC
TTGAGCACCACATTAAATGCAGACGAGGCCGTATCCCGAGGCTGTGCTTT
GCAAGCAGCCATTCTCTCGTCGCGCTTCCAGGTCAAACCCTTCGAGGTTC
TCGAGGCGTGTCCATATCCGATCAAGCTGAgttgggaggaagacgcctcG
GCCACGCctatggacgaggacgaaacAGGAACGGGGGGCGAGGGTGATGA
CGGAGCCGTTAAAGCAGGAGATAATTCGGTGCTACTCTTCAAGCGCAACG
ACAGGGTGCCCAATCAGCGCCGGATCACCTTCCGGAAGGACGCCGACTTC
ACCGTCACGGCGGCGTACGAGGACTCCGGTATGtcccttctgccccctgG
CACGAAGACGGAGATCGCATCCTTTCGAGTGGCGATTCCGAAAGAGTACC
AAGGGCTCGGGGCGAAGGCGAAGGTCCGTCTGAGTCTCGTGTACAACTTG
CACGGTGTCCTAGTGATGACGCAGGCCCAACTCATGGAGGAGGTTCAGAC
GGTGCCGCCAGCCAGCGCAGGAGCGGAGACTGGGAAGGCGGAGCCAGGCG
AAGAGGTTAAGGCCGCCGAGGCTGCGGGGGACGgagtgggtgggggggac
ACAGCTGCTGCCTCggccatggaagaggaaaagaaagaggaccAGCCTGC
GAAGCCGGAAACGTCTGCGGCGACAGCGACAAACGAGGCGGCCaaacaga
agaagaagtaTAAGACTCATTCCCTAGGTGTGGTGACGAAGGCGCCGGGC
CTTGTCAAATCGGAGAAGGACGCGTTTGTAGAAATAGAGGCCCAGATGGA
ACAACAGGACCGCATCATTCGTGAGACTGCCGACACACGCAACGCTCTGG
AGTCCTACATTTATGATCTGAAAGCCAAATTGGGGGACAGCCTTAAGCCG
TACGTGCAAGACgaggccgccacggccttcaacgcccagctggaggaggt
ggaggagtggCTGTACGGCGATGAGGGCTTCGACTCGACCAAGTCCATCT
ACGCGGCGAAGCTCGCCACCCTCCGAGCACTCGGCGATCCCATCCAAGTG
CGGATGGACGAGGCCAGCAAGCGGGAGCCGGCTCGCGTTGAATTCTGCCG
GCAGCTTGAGGAGTACAAGACGCTTGTCAAGTCGACAGAGGAGAAGTACA
GCCACATCACGGATGAGGAACGCAATAAAGTCCGTGAGGAGGTGAATGGA
GCGGAGTCCTGGCTCTTCGACCTACTTGCCAAGCAGAACGAGCTACCGTC
CCACGTGGATCCAGTTTTGACGGTGGGTGCCATCAAGGAGCGACAGAATG
CTTTAGCACACGCCGTTTTGCCAGTAATGAACCGCCCAAAaccgccgccc
ccggccccagcgCCAGCTCCTTCACCCTCTGCAACCAGTGGTGTTGAAGA
CAAAACGGGCCCGGAAACCAAGGGCGATGGTGTCGAGGCAACAcccaagg
agggagcgacggaaCCAACCGCCATGGATGAAGGTGGTGCAACCGCTGCA
GAGAATGAACAGACTTCAATGGACACCGCCTCTTGATCGTCGGGAGCGAT
GGGAAAAGGCTATCATGGTACCCTAGGGAACAGTTAACGTGCCAATCTGT
GTGCGGCGCACCTATGGTGCCTTCTGCATCCACGTCGATTCTCATGGAGA
TTGGATCAGACGATGAAGGAAGACATCTTTGATTTAGGAACGTTGCACGC
GTAGGTGATATAAATGTTCGTACGCAGATTACACTCGCCAAACTagtcct
ttcttttctttttttgctttaTGCTTTACTTGATGCTTTATTTTAGTCAC
AAGACAACCACAA

Coding sequence (CDS) from alignment at CM002455.1:790892..794354+

>rna320 ID=rna320|Name=rna320|organism=Nannochloropsis gaditana|type=CDS|length=2649bp|location=Sequence derived from alignment at CM002455.1:790892..794354+ (Nannochloropsis gaditana)
ATGGCGGTGGTAGGAATCGACCTGGGGAATCTCAACATCGTAATTGCGCA
GGCTCAACGTGGCGGTGTGGACGTAATTCTTAATGAAAACTCCAACCGAC
AGAACCCAAACTTGGTCTCTATTTCGGACAAGCAGCGTTTCGTTGGTGAA
CAGGCCCTGACGCTGGCCAGGTCGAATTACAAGAACACCATCTACGCCAC
GAAGCGTTTTATCGGAAAACAGTACGATGAACCAGACGTACAGAAAGAGA
TTCAGTCACTGCCATTTAAGGTGGTGAAACTGCCCTCGGGGGGGGTCGGG
TATGAGGTGACATACGGCGGGGAGGTCACTGTGCTGTCACCCGAGCAGGT
AGTGGCCATGCTCTTCGCCAAAGTCAATGACATCGTCAAGGCCGGAAACA
ACAACGTGGCTATCGCCGAGGCTGTAGTAGCCATTCCTGGGTGGTTTACA
GACGCGCAACGTCGTGCCGTTTTGGATGCGGCGGACATCGCAGGTTTGAA
CGTGCTGCGTCTCATGCACGAGTCCACCGCTGTAGCGCTTTCGTATGGCA
TCTACAAGTCTGTCCGCAACTTGTTCCACGAAAGCGACCCACAACATGTC
CTCTTTGTTGATTTGGGTCATTCGAATTTTTGTGCGTCCGTGGTGGCGTT
CATCCAGGGGAAGTTGATTGTCAAGTCAGCTGTTTACGACAGGAgtctgg
gagggcgggacttTGACCAGCAGATCGTGGATTTCATGGCAGAGCAGTTC
GTTTCTAAGTACAAACAAGACCCCCGGGAGCACCCCAAGGCATTGCTGAA
ATTGCAGGCGGCAGCAGAAAAGGCGAAGAAGACTCTGTCCCCAGCGGGCG
TGTCGGAGGCATCCATTTCGGTGGAGTGCGTTTTGGAGGACACGGACTTG
AACACGGCCTTGTCATTGGAGGAATTCGAGAAGCGCGTACAGCCCCTTCT
TGCTCGTCTAGACGGTCCCATCATGCAGGCAATGGCCGAGGCGGGAGTAT
TGCCCGAACAGCTCGCTAATGTCGAGGTAGTGGGCGGTGGCACGCGCGTG
AACTCTGTCAAATTGCACATCGCGGCCTTGCTGAAGCTGGACAAGAATAA
GCTGAACTATGGCTTGAGCACCACATTAAATGCAGACGAGGCCGTATCCC
GAGGCTGTGCTTTGCAAGCAGCCATTCTCTCGTCGCGCTTCCAGGTCAAA
CCCTTCGAGGTTCTCGAGGCGTGTCCATATCCGATCAAGCTGAgttggga
ggaagacgcctcGGCCACGCctatggacgaggacgaaacAGGAACGGGGG
GCGAGGGTGATGACGGAGCCGTTAAAGCAGGAGATAATTCGGTGCTACTC
TTCAAGCGCAACGACAGGGTGCCCAATCAGCGCCGGATCACCTTCCGGAA
GGACGCCGACTTCACCGTCACGGCGGCGTACGAGGACTCCGGTATGtccc
ttctgccccctgGCACGAAGACGGAGATCGCATCCTTTCGAGTGGCGATT
CCGAAAGAGTACCAAGGGCTCGGGGCGAAGGCGAAGGTCCGTCTGAGTCT
CGTGTACAACTTGCACGGTGTCCTAGTGATGACGCAGGCCCAACTCATGG
AGGAGGTTCAGACGGTGCCGCCAGCCAGCGCAGGAGCGGAGACTGGGAAG
GCGGAGCCAGGCGAAGAGGTTAAGGCCGCCGAGGCTGCGGGGGACGgagt
gggtgggggggacACAGCTGCTGCCTCggccatggaagaggaaaagaaag
aggaccAGCCTGCGAAGCCGGAAACGTCTGCGGCGACAGCGACAAACGAG
GCGGCCaaacagaagaagaagtaTAAGACTCATTCCCTAGGTGTGGTGAC
GAAGGCGCCGGGCCTTGTCAAATCGGAGAAGGACGCGTTTGTAGAAATAG
AGGCCCAGATGGAACAACAGGACCGCATCATTCGTGAGACTGCCGACACA
CGCAACGCTCTGGAGTCCTACATTTATGATCTGAAAGCCAAATTGGGGGA
CAGCCTTAAGCCGTACGTGCAAGACgaggccgccacggccttcaacgccc
agctggaggaggtggaggagtggCTGTACGGCGATGAGGGCTTCGACTCG
ACCAAGTCCATCTACGCGGCGAAGCTCGCCACCCTCCGAGCACTCGGCGA
TCCCATCCAAGTGCGGATGGACGAGGCCAGCAAGCGGGAGCCGGCTCGCG
TTGAATTCTGCCGGCAGCTTGAGGAGTACAAGACGCTTGTCAAGTCGACA
GAGGAGAAGTACAGCCACATCACGGATGAGGAACGCAATAAAGTCCGTGA
GGAGGTGAATGGAGCGGAGTCCTGGCTCTTCGACCTACTTGCCAAGCAGA
ACGAGCTACCGTCCCACGTGGATCCAGTTTTGACGGTGGGTGCCATCAAG
GAGCGACAGAATGCTTTAGCACACGCCGTTTTGCCAGTAATGAACCGCCC
AAAaccgccgcccccggccccagcgCCAGCTCCTTCACCCTCTGCAACCA
GTGGTGTTGAAGACAAAACGGGCCCGGAAACCAAGGGCGATGGTGTCGAG
GCAACAcccaaggagggagcgacggaaCCAACCGCCATGGATGAAGGTGG
TGCAACCGCTGCAGAGAATGAACAGACTTCAATGGACACCGCCTCTTGA

Synonyms

Publications