rna3194, rna3194 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3194
Unique Name	rna3194
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1817
Alignment location	CM002460.1:972020..972792 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100855g4.1135.mrna
Orig protein id	gnl\|cribi\|Naga_100855g4.1135
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:972020..972792 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100855g4	gene3071	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3194	rna3194-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27485.1	cds3186	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:972020..972792+
coding sequence from alignment at CM002460.1:972020..972792+

mRNA sequence

>rna3194 ID=rna3194|Name=rna3194|organism=Nannochloropsis gaditana|type=mRNA|length=1817bp
GGAGCCCGTCGCCGTATGCCTCCTGAAACCTTTCTCTTCCCTCAGATACC
CTTTTTAGACTTGGGTTATTTCTTTCGTGAGGGCGAGTGGGTTTCTTTTG
GTAAGCATGCCACCATTCTACGCTTTGGATAAAACGGTGTTGGAAAGTAA
GCTCATGTCGTGGGCTTGAGAATATCACAGATGATAGCCTTATTTCAAGC
TCGCCCTAGCAAGCCCCGTAAGGTGCAGTCCGACCTATATTTGGCTTTCT
CTTGGTCGCGGCATGTCCTCAACGAGGCTTAGCCGCTCATCGTGCGTTTA
TCTTTCTGATACCTGGGAGGATGGTGCCTCTAACAAGTTAGATCATGGAG
GACGGGATGCGACTTGCCACAAGATTTGCGGCAACTGGCTTGCCTACGCC
TTTTGCGCACGTGGATGGAGTGGGTCGGGTCGCGGACCCGGGTGAAAGGG
AAGGCAACATCGGAAGCGGACGTGATTCACAGAAAAGGATGTCTTTGTCT
GGCTTGCTGGAATCTTTGTGCTCTATTCCGTCTGTGGTGAATAATTTTGG
GGCAGGCTGGCTAGCGGGTACAACCACAATGCCGCCGTTCTCCCTTTAAA
GCCCTGGATGCATCTTGAGGGCGATCCCATCGATGTCAAAGCTCTAAGAT
CATTAAATCATATGCCAAAGCACACTCACACATCCTATTGATATCCTTTG
ACAGACAGGAGCCACTTTTCTGAGATCAGTCATGTCTGCAAGGACGGCTT
TCTGCCTAGCCATCGTGGCCCTTCCGTCCGCTTCTGCATTTTTGTTCCCC
TCCTCTTCCCCTTTGTCCTCTCTGACGACGGGCCCCCCCACCTTGTCGGG
AAAATCTGCCTGTGGATTTCGCGTGGCCCCTGAGACAAGACGAGGAGCCA
CCGTCGCAGCGTCTGCCGCCACGCAGGCGAAAGCCGACACGGGACGGGAA
CTCACCTTGGCAGATGTGAAGGGCAGCAACACGGACGCAGTCTGGGCGGA
GGTGCCGGAGGAACTTTATTTCATTGCCAATTACGCAGCGGCCTTGGGCG
GGGAGTACCCCCCCGAGAACGTGGACAAGTCCTACTGGGACCAGATCAAG
CCTGCCACCTACACCAAGCTGGCGGCTTTGGCCAAGACGGCGGATCCGAG
CACCATCTCCCAGGGACAGTACCTGATGTTGATGGAGGCGATCGTCCGCG
ACGCTATTGCCAAGGACCCGTCCTTGGCACGGCCGACGATGGAAGAGCCC
AGCTTGACCGAACAGCAGGAATACATCTACAACTGGATCCAGAATGTGCC
CAATGACGAGTTTCTGAAGTTCAAGGAAGAAAACAAGATGGAGAACATGA
GCCCGGCCGAGTGGTGGGGCAAGATCGACGAGGTTGCCAAGGAGAACGCT
GCCAAGGGCATCAAACTTCCGGAGATGACGCTGGACCTGACCACGGATGA
CTTTTTGGGGGTGGCCCGCGAGGAATTTGTCAAATCCATCAAACAATTCT
TGAAGGTGGAGTCAGAGCTCTACCCCGTTTTCATCATTTCCAAGCCCGGA
TGTGCGGAGGGCGCCAAGATGGTGGAGCTCTTCAACAAGACGATGGACAT
CCCGGTGCGCACCTACGAGGTCTTTGGCTTCGACGCCTTCAAGTTCAAGG
TGAAGGCCGACTACGACTGGGGCGAGGCACGCCTGGAGGCGATCGAGGAG
CTGACGGGAAGCCAGGTGAGCGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAAGGTGTGGGGCAGGGGACAAGGAAGGGAGGTGAAA
CGACGGACTTCAGGTGA

protein sequence of rna3194

>rna3194-protein ID=rna3194-protein|Name=rna3194|organism=Nannochloropsis gaditana|type=polypeptide|length=100bp
GHRGHGRSPFPQAGGGEHVHRDAEGDGGRVQGLRSEAGADGGAGPAGGEQ
ESGQRGGGQEVRGGGKWNYGGEGGGRERQAGGGDLEWWRCVERACVGRCV

mRNA from alignment at CM002460.1:972020..972792+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3194 ID=rna3194|Name=rna3194|organism=Nannochloropsis gaditana|type=mRNA|length=773bp|location=Sequence derived from alignment at CM002460.1:972020..972792+ (Nannochloropsis gaditana)
AGGCCATCGTGGACATGGTCGAAGCCCGTTTCcccaagcaggaggaggag
agcatgtACATCGGGATGCGGAAGGTGACGGCGGCCGAGTACAAGGCCTA
CGAAGCGAAGCAGGCGCAGACGGGGGGGCTGGACCCGCTGGAGGCGAGCA
GGAAAGCGGCCAAAGAGGCGGCGGACAAGaagtgagggggggggggaagt
ggaattacggaggggaaggtggagggagggaacgtcaggcgggaggtggt
gaccTTGAATGGTGGCGGTGTGTGGAGCGTGCATGTGTTGGACGGTGTGT
GTGATGTGCTTGGAAGGACGGGGCGCGAGGGAAAagagccgggaggaggc
aaccgcgccgagggagggcaggagggagggcagtgaCCGCACGATAGAAG
CAGGGCGCCTCCTTttgcggagaggaaggtggtcttcccctcttccttcg
cctgAAGAAGCAGAGACTCCAGAAAGCGTGCCAAAGGGAAGCGCGcaccg
gcgggggggggggggctgatagagcttgtcctcctccgtcctgtcTGGCG
CCTATCGAgcccagggcgggaaggggtgggTCACTGCGCTTGCCTGACAC
AGCGGCACTTCCTGAGGGCTCCGCTGGGTGGTTTCTTTCTGGGAACGGAG
CGTGTGCACTCCTTGGACCTTTTCGTATCTCCTTCGATCTTGGTGTCGTC
AATCGTCTCCCTGAGCAGCATTTTAagcgcgagagggagggagcgaggaa
aggaagaatgTGACGGGAAAATG

Coding sequence (CDS) from alignment at CM002460.1:972020..972792+

>rna3194 ID=rna3194|Name=rna3194|organism=Nannochloropsis gaditana|type=CDS|length=303bp|location=Sequence derived from alignment at CM002460.1:972020..972792+ (Nannochloropsis gaditana)
GGCCATCGTGGACATGGTCGAAGCCCGTTTCcccaagcaggaggaggaga
gcatgtACATCGGGATGCGGAAGGTGACGGCGGCCGAGTACAAGGCCTAC
GAAGCGAAGCAGGCGCAGACGGGGGGGCTGGACCCGCTGGAGGCGAGCAG
GAAAGCGGCCAAAGAGGCGGCGGACAAGaagtgagggggggggggaagtg
gaattacggaggggaaggtggagggagggaacgtcaggcgggaggtggtg
accTTGAATGGTGGCGGTGTGTGGAGCGTGCATGTGTTGGACGGTGTGTG
TGA

Synonyms

Publications