rna3188, rna3188 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3188
Unique Name	rna3188
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3798
Alignment location	CM002460.1:958394..961522 +

Link to JBrowse

Properties


Property Name	Value
Product	ammonium transporter
Orig transcript id	gnl\|cribi\|Naga_100099g15.8530.mrna
Orig protein id	gnl\|cribi\|Naga_100099g15.8530
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:958394..961522 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100099g15	gene3065	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3188	rna3188-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27494.1	cds3180	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:958394..961522+
coding sequence from alignment at CM002460.1:958394..961522+

mRNA sequence

>rna3188 ID=rna3188|Name=rna3188|organism=Nannochloropsis gaditana|type=mRNA|length=3798bp
ATGTCATCAAATGGGTACCTTCGGGCCTACCACCTCCTGATCGCCCTCCT
GATATCAGCCAACGCTTTTTTAATTACGCCTCCACGCCTCTCCAAGACCA
CCATCGGCCTCCAATCCTTCGTGACAGCAAATTATGGAGTGAGGAGAGCA
ATCTCTCTCCGAGGGGGGCTACAATCTGTTTCGATGAAGGCACCGGCTGC
CGTTGCTTCGTCCACCTACGACTACATCATAGTCGGTGGCGGCATCGGCG
GTTGTGTTCTCGCCAACCGACTGACAGAAAGCGGGCGTTTCAAGGTCCTT
CTCCTGGAGGCCGGAAAATCAGCAGAGCGAAACCCGTACGTGAACATCCC
CGCGGGCGTGGTCCGCCTCTTTAAATCGGCCTTGGATTGGCAGTTTGAGA
GCGCCCCCGAAAGACACCTGGACGGGAAGGAGGTGTACTTGGTCAGGGGG
AAGGCCATGGGAGGCTCCAGTGCGGTGAATGTGATGCTCGTACACCGCGG
CTCGGCCTCCGACTACGCGAAGTGGGAGGCGGAGGGAGCTCAGGGATGGG
GCCCGGAGGAAGCCTTACGCTACTTCAAGAAAATGGAAGACAACTTGGTG
GGCGGGGAAGGGCGGTGGCACGGCCAGGGGGGCATGTACCCGGTGGACGA
CGTCAAGTACCAAAACCCTTTGTCCAAGCGCTTTTTACAGGCGTGCGAGG
AGTACGGGTGGCGGGCGAACCCGGATTTTAACGACTGGTCCCATCCCCAG
GACGGATACGGGAGCTTCAAAGTGGCGCAGAAGCACGGCAAACGGGTGAC
GGCCGCCTCCGGGTACTTGAACAAGGCCGTTCGACGTCGACCAAACCTAG
ACATTCTGTCAGAGGCCCTTGTGACCCGGGTTTTGCTTGAGGGAGAGGGG
GATGTGAAGGCGGTCGGGGTGGAGTTCACGGGCAAAGATGGGAAGACGCA
CCAGGTTCGGACCACGGGGAAGGCGGGAGAAGTTCTCTTGGCGGGCGGCG
CGGTCAACAGCCCCCAACTCCTGATGCTGAGTGGGATCGGACCCGAGGCA
GACCTCCAGGCAGTAGGCATCGCGACCAAAGTAAACCGTCCGGGCGTGGG
GGAGAACTTGCAAGACCATCCCGCCGTCACTATTGCGCACAACATCACGC
GCCCTATCTCGCTCTGCGACGACCTCTTCCTTTTCCACACACCTGTCCCT
AAGCCCCACCAGGTGCTCCGGTGGACCTTGACCGGATCGGGCCCGCTGAC
CACCCCAGGCTGCGACCACGGCGCGTTCCTGAAGACCCGAGAAGACCTCC
AGGAACCCAACGTACAGTTTCGTTTCATAGCCGGGCGGGGTTCGGACCCT
GACGGCGTGCGCTCCTACATCATGGGAGGCTCAGCACGCCCCCTGTCGGG
ATTGACGCTTCAAGTCGTCAACATCCGCCCCAAAAGCAAAGGGAAGCTGA
CCTTGGCGAGCAAGGACCCGTTGAAGAAGCCCCGGATCGAAGTCCGGTAC
TTGTCCGCGGCCGAAGACTTGCAGGCCCTTCGCACGGGCATGAGGATTGG
CCGGGATCTGATCAAGCAACGGGCTTTTGCGGATATCTTGGACGAGGAAG
TGTTCCCGGGGCCCGCCGCTCAGACGGACGAGGAACTGGACGCCTACATC
CGGGATAGCTTGCACACGGCCAACGCCCTGGTAGGCACCTGCAAGATGGG
GAGTGTGGAGGATCGGAACGCAGTGGTGGACCCGGAGTGCCGGGTCATCG
GCGTGGGAGGCCTGCGGGTGGTGGATGCAAGCGTGATGCCCGTTATCCCC
GGAGGGCAAACGGGAAGTGGCACGACCATGCTGGCCGAAAAAGCGGCCGA
CCTGGTCAGGGCCCACGCTGGGGATTTGGTGGAGATGGGAGTGCAAGATG
AGGAGAGGAAGGGAGGATGGTTTAACGGCCTGTTAGGGCGCAAACAGAAG
GTGGCGACAGAAAAGGAGCGAGGCGAACGTGGTAAAAGCGAACGATTTGT
TTCTGAGGTGATTAGGCATATGGGTCGGGTTTTCGTACAAGTTTCGAGGG
CAAGGCGTGCGCAAACGTGCATGAGGGTAGGGAAGGGTCTCGATAGGGAA
CGGCAGTTGGAGTGTGCCATGCGCAAGGAATTGACGATTGCGCTTTTTTA
CGCAATGCTTTTTACAATGAGACATAGTGGATTTCTTTCGACGACTGGTC
GCGCCTCATATAAGGACCTTGGATACTTGACAGGGTCCTGTCGCGCCCAC
CCTTGTACATCTCCATCCTCCTTGTGCCTGTTTCCAGAAAAACCTTTCAT
GAAGCTAAGCCCTGCTTTGGCGGTCGTTGGCTTTTGCTTTAATTCTATCA
ATGTCCAAGGTTTCCTACTCAGCAACCTTGCCGGTCGGAGCCTGAAGCAT
CCGGTCCCACAAAAGGGCTTGTATAGTCGCATTGAGTACGATGCACGGGA
GCCACGTCTCGATGAATTCGGCCTCCCTCTTGATCCGGCGGATTTGATGG
AAAAACCCCGAGTGCCCCTGAAGGACCGAGTTTATCACATCATTGACATG
ACAAACGACTGGGTCGATGCTGTGAGCCGCGGACGGCGAGAGGAGGAGAC
GCGTCGCATCATCCAACGACGTCGTGCCGCTGCCAAGGCCATGGCAATCA
AGGACAAGGTCTTGATTTCTCTTGACTACGTCTTCCATCCAGTCAAGGCC
TGGAGGACCTTCGTGGCGGACCCCTTGGAAGCACGGCATCAGCGCCAGCT
GCGTCAGCAGGCAGAAAAGCGAGCGAGACTAGAACGGTATCTGCAACGCT
ATAACACGGTCAAGAATCGCTTCCATGATACTCTGGATCTTTTGGAGTCG
ACGACCCGGACATCGGTGAAAGTGGCCAAGTCCGTGAGTTCCGCAGTGGT
GGGGGCGCCTGGGACGGTGACGCGGACCGTGAAGGAGGTGAAAAGCCAGG
CACAGGGCACAGCGGAGGCAGTGGCGAAGGTGTCTTCCTCCGTCTCCTCG
GTGGTGTCCAAGATCACGTCGGTGATCAGGAAGGAAGACGGGGCTCTGGC
GGGGGCCAAGGGGAAAAAGGACCCGAGATCAGAAGACGAAGGAAAAGCCG
ATCCAGTCAAGGTCCGGGAGATCTGGGAAACGAAAGAGCAGACCGCGATT
CGCACCATCTGGGAAGCGGATGAGCTTGTCACGCCGGTAACACCGCCAGC
CACGGCTATGGCGTCGACGGTTTCGGTGTCAGAGCCTCAGGACGAGAACG
AAGCTTCCATCTCTCAGGGAGCGGCGCCTTCCCCCAGCACCTCATCACCA
TCCTCCCCCGAGCCCGTCACACGCCTCTCTTTCCGGGCACGTGTGGAGGC
GGACGAGAAGGAACGCTTTGGGTCCCGAAGATTGAAGATATCGGGGAATG
TCCCGCCGACCGCTTCTCCCACTCGGGGGGCTTCTTCTCTCCCTTTGGAC
ACGCTTTCCTCCTCCGCCACCCAAACCTTTGAGCGTTCCAAAGTGGGGCC
GCCCATACGAACAAGTAAGGCGAGATGCATTGGAAAATGTGTACATAACG
GGTGGAAAGGGATATGTGAGGAATGGTTTGTGCACATTAGTTTTCCAACG
TATGCGGTCTCTATCGTCCGTCCACCCATGCACGTGCATAATTTTAAAGT
GATTTGTTGTGTTCTAGCGGTCCGACATGCAAGAAGGAAGAAGGAGATGA
GCACGGCTTTATCTACACATTTAATTTATTTACTGCTGAAAACGGTAAAA
ATGTTGCAAGATCTTCCCCAGCTACGGAGAAAGGGCAAAACAAACTAG

protein sequence of rna3188

>rna3188-protein ID=rna3188-protein|Name=rna3188|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MRQGYVNIVGTKVTGMSNALDAFNFILNPIIHHRSSVLQGYHQPSPQRIM
GIDFTDKIVKRRIITGSVLSLLLALSIAMTCFDAKKGGAYIMADDDPSII
NYNAALPTEEEPQLLPGDIAWMLAATALVLLMTPGLAFFYGGMVRAKNVI
STLLMSFVAMGVITMLWTVVGFSLAFGDSLSGYMGNPATFPFYNNVGAAA
DTNFSNTIPLALYSLFQLKFAIITPALISGAIAERVRFTSYIIFIVLFSL
FVYCPLAHMTWHPDGLLAKAGILDFAGGTVVHMSSGYAALVGSIILGPRK
NVGKMQPANIPFVMLGTALLWFGWFGFNAGSALAADPVAVQAFLTTNTAT
AAAMLTWVFVDHLRGSKSTAMGACVGAVVGLVVITPGAGFVTVGGAACMG
MIGAFISNVVAHYFNTKANIDDTLDVWPCHGLGGTVGMVLTSCFATVSAN
ADGADGLFYGDATLFWHHLVALVCLIPYIMGMSFLCYQITNLIYPLRVGE
KSEKLGLDMSQHKESIMVHDEEEDDVVKPADDLDASSRIELGSM

mRNA from alignment at CM002460.1:958394..961522+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3188 ID=rna3188|Name=rna3188|organism=Nannochloropsis gaditana|type=mRNA|length=3129bp|location=Sequence derived from alignment at CM002460.1:958394..961522+ (Nannochloropsis gaditana)
GGGATTACCAACACCACCTAAAGCGCTTCCATGGACGGTAATTTGTGGTT
TCTTCATTTACAAAATCTTGGTATACTTTCTCAATTGTCATTTTTTGCGG
TCCACTCGCGTGTTATGGACCATCAGCGCACATTTCTGGGGCTTCCCGGG
GCGTATGCGCAGTTGGACAGGCGCTGATTGTATGTCTGATGCTGGGAAGT
ATGCGGGCTTTGTTCGATTGTTCAGGCTTGATCACGCAACCAAAGGCTTG
AAAATGTACACTATACGGCCCCAATTCAAGCCTCTTTTCACCCTTGGAGT
TCCTATGTGACTCTGAGAAATGTGCCCACCCGCTAACATAGTTGCCCGCG
TTCCTTTCGTGTTTAGTAGCAAGGTATTTACGAGGCGGCCGTATCATATG
CTGTAAAGCAGCATTTCTTCATCACTCCTACCTCCCGATCCCTTCAAAAA
TGTGCCTCTTCATAGAAAAGGAGCTCCATGATGCATGTAGAGTGTAAAAG
TGATACTCAACGTGTCGCGCGTGAAGTGCTGTCCTACGCTCCTGCAGTGG
ACCTCAGTAGGACTGGCCATGTCATGCCATGGATGTTTCGCGACATCCCC
CGTTATCCCCGCCTATCTTTTTAAGATTTGTGCGTGTGAGCCTCACAGGA
TGACAATCCAGGCGCACTGTGCTCGCAAGTGTGGAAGTCTTTGCCTTGCA
TGAGACAAGGCTATGTAAATATTGTCGGTACCAAAGTGACGGGCATGTCT
AACGCGCTCGACGCTTTCAACTTCATCCTGAACCCCATCATCCATCACAG
ATCTAGTGTATTACAAGGCTATCATCAGCCTTCACCTCAAAGAATCATGG
GCATCGATTTCACCGACAAAATTGTGAAACGGCGCATCATCACCGGTTCG
GTGCTcagtctcctcctcgcgctaTCCATTGCCATGACCTGTTTTGacgc
gaagaaggggggcgCCTACATTATGGCCGACGACGATCCATCCATCATCA
ACTACAACGCAGCCTTGCCCACCGAAGAAGAGCCCCAGCTTCTGCCCGGA
GATATTGCCTGGATGctggccgccaccgccctggtCCTTCTCATGACCCC
GGGACTGGCCTTCTTCTACGGCGGCATGGTCCGCGCCAAGAACGTgatct
ccaccctcctcatgTCCTTCGTGGCCATGGGCGTGATCACCATGCTCTGG
ACGGTGGTgggcttctccctcgccttcggGGATTCGCTCTCGGGCTACAT
GGGGAACCCTGCCACTTTCCCTTTCTACAACAACGTCGGCGCGGCTGCTG
ACACGAATTTCTCCAACACCATTCCCCTAGCGCTCTACTCGCTCTTCCAG
CTCAAGTTCGCCATCATCACCCCGGCCCTGATCTCGGGCGCCATTGCCGA
GCGCGTGCGCTTCACTTCCTAcatcatcttcatcgtcctcttctccctct
tcgtctaCTGCCCTCTGGCGCACATGACCTGGCACCCTGACGGCTTGCTC
GCCAAGGCGGGTATCCTGGACTTTGCGGGCGGCACGGTCGTGCACAtgtc
ctccgggtatgcggCCTTGGTCGGATCCATCATTTTGGGACCCCGCAAGA
ACGTGGGTAAGATGCAACCAGCCAACATTCCCTTCGTCATGCTCGGCACC
GCCCTTCTCTGGTTTGGCTGGTTCGGCTTCAATGCTGGGTCCGCCCTTGC
CGCCGATCCCGTTGCCGTCCAGGCCTTCCTGACCACCAATaccgccacgg
ccgccgccatGCTCACCTGGGTATTCGTGGACCACCTCAGGGGCAGCAAA
TCGACGGCCATGGGCGCCTGCGTAGGCGCCGTCGTCGGCTTGGTCGTGAT
CACCCCCGGGGCGGGCTTCGTGACCGTAGGGGGTGCGGCCTGCATGGGCA
TGATCGGTGCTTTCATTTCCAACGTGGTGGCCCATTACTTCAACACAAAG
GCGAACATCGACGACACCCTGGACGTCTGGCCTTGCCACGGAttgggagg
gacggtgggGATGGTCTTGACCTCCTGCTTTGCCACAGTCAGCGCGAATG
CGGACGGCGCGGACGGGTTGTTCTACGGCGACGCCACCCTCTTCTGGCAC
CACCTGGTGGCGCTCGTCTGCCTGATCCCTTACATCATGGGCATGTCCTT
CCTCTGCTACCAGATCACCAACCTGATCTACCCCTTGcgcgtgggggaga
agagcgagAAACTGGGCCTGGACATGTCCCAGCACAAAGAATCGATCATG
GtccacgacgaggaggaggacgacgtggtcAAGCCCGCGGATGACCTGGA
TGCCTCCAGCCGCATTGAGCTCGGCTCCATGTAAGGACGGGGCCCCTAAA
AGTGTCCTTGATGCTGGTGTTACGCAGATGTGGGCGCAGCAGACCGCGGA
GCCTGCGCGATAATTACAAACAGCCTTTTAAATAAAATATGCATGCATGT
GAGCAGAGTCTCCCggactggaggaggaaatacAACGTGGTACAATCGAA
GGTTTTGACCACCTTCGACGCCAAAATGGGCATTTTCGGGAGGAAATATA
GATAAGGATACATAAGCAAGTAATGTTGCGAATTTGGACCCGGTGTACGG
TGTATAAATGCCGTGCGTGGGTGTCGGGAGAGATAGGACAGGCCATCACA
AGAAGGAGACCAAGTGAATACGTTATTACCCAGCCCAGAGGCTGCGatgt
gggaaaagaggaagggctatTTTGTTGAAATGGGCTCAGGAGGGGGGTGG
TcggagggtggggaagaaaacGGCCGCGGGGACGGGGCAGAGGCATCTGA
TCGAAAGAACCAAATACTTCATCCGCAGCGACACTCCACCGGGCCtgatc
ctctccatcccccttgATTTCTGACATTGCCATTGTGCCAATTACCCTTG
CCGAGTGGATATGCAGGTCCTAGCGCCTTCCCTGGCGCTTCTCCTTATCA
TGCAAGAACATCAAAGAAATTGTTGAAGAGCATGAAGAACATGATCACGC
GTGTCGCTTTTTACTTTTGCATCCCTCTCCGTCACGCTTTCAGCGGTAGG
TAGTTTCCCGTCTCTCCCTGGTACGTTTCGACACAAGGCAGAACCAAGCA
TCAATTTGCCATCGACGACCCGGCAACCA

Coding sequence (CDS) from alignment at CM002460.1:958394..961522+

>rna3188 ID=rna3188|Name=rna3188|organism=Nannochloropsis gaditana|type=CDS|length=1635bp|location=Sequence derived from alignment at CM002460.1:958394..961522+ (Nannochloropsis gaditana)
ATGAGACAAGGCTATGTAAATATTGTCGGTACCAAAGTGACGGGCATGTC
TAACGCGCTCGACGCTTTCAACTTCATCCTGAACCCCATCATCCATCACA
GATCTAGTGTATTACAAGGCTATCATCAGCCTTCACCTCAAAGAATCATG
GGCATCGATTTCACCGACAAAATTGTGAAACGGCGCATCATCACCGGTTC
GGTGCTcagtctcctcctcgcgctaTCCATTGCCATGACCTGTTTTGacg
cgaagaaggggggcgCCTACATTATGGCCGACGACGATCCATCCATCATC
AACTACAACGCAGCCTTGCCCACCGAAGAAGAGCCCCAGCTTCTGCCCGG
AGATATTGCCTGGATGctggccgccaccgccctggtCCTTCTCATGACCC
CGGGACTGGCCTTCTTCTACGGCGGCATGGTCCGCGCCAAGAACGTgatc
tccaccctcctcatgTCCTTCGTGGCCATGGGCGTGATCACCATGCTCTG
GACGGTGGTgggcttctccctcgccttcggGGATTCGCTCTCGGGCTACA
TGGGGAACCCTGCCACTTTCCCTTTCTACAACAACGTCGGCGCGGCTGCT
GACACGAATTTCTCCAACACCATTCCCCTAGCGCTCTACTCGCTCTTCCA
GCTCAAGTTCGCCATCATCACCCCGGCCCTGATCTCGGGCGCCATTGCCG
AGCGCGTGCGCTTCACTTCCTAcatcatcttcatcgtcctcttctccctc
ttcgtctaCTGCCCTCTGGCGCACATGACCTGGCACCCTGACGGCTTGCT
CGCCAAGGCGGGTATCCTGGACTTTGCGGGCGGCACGGTCGTGCACAtgt
cctccgggtatgcggCCTTGGTCGGATCCATCATTTTGGGACCCCGCAAG
AACGTGGGTAAGATGCAACCAGCCAACATTCCCTTCGTCATGCTCGGCAC
CGCCCTTCTCTGGTTTGGCTGGTTCGGCTTCAATGCTGGGTCCGCCCTTG
CCGCCGATCCCGTTGCCGTCCAGGCCTTCCTGACCACCAATaccgccacg
gccgccgccatGCTCACCTGGGTATTCGTGGACCACCTCAGGGGCAGCAA
ATCGACGGCCATGGGCGCCTGCGTAGGCGCCGTCGTCGGCTTGGTCGTGA
TCACCCCCGGGGCGGGCTTCGTGACCGTAGGGGGTGCGGCCTGCATGGGC
ATGATCGGTGCTTTCATTTCCAACGTGGTGGCCCATTACTTCAACACAAA
GGCGAACATCGACGACACCCTGGACGTCTGGCCTTGCCACGGAttgggag
ggacggtgggGATGGTCTTGACCTCCTGCTTTGCCACAGTCAGCGCGAAT
GCGGACGGCGCGGACGGGTTGTTCTACGGCGACGCCACCCTCTTCTGGCA
CCACCTGGTGGCGCTCGTCTGCCTGATCCCTTACATCATGGGCATGTCCT
TCCTCTGCTACCAGATCACCAACCTGATCTACCCCTTGcgcgtgggggag
aagagcgagAAACTGGGCCTGGACATGTCCCAGCACAAAGAATCGATCAT
GGtccacgacgaggaggaggacgacgtggtcAAGCCCGCGGATGACCTGG
ATGCCTCCAGCCGCATTGAGCTCGGCTCCATGTAA

Synonyms

Publications