rna3184, rna3184 (mRNA) Nannochloropsis gaditana

Overview
Namerna3184
Unique Namerna3184
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length945
Alignment locationCM002460.1:942949..945086 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100099g10.8536.mrna
Orig protein idgnl|cribi|Naga_100099g10.8536
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:942949..945086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100099g10gene3061Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3184rna3184-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27500.1cds3176Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3184 ID=rna3184|Name=rna3184|organism=Nannochloropsis gaditana|type=mRNA|length=945bp
ATGGAAGCGGGTGGAGAGTCAAGCGTTGTGGAGCAATTTGTGGTCTCTTG
GCAAAGGAAATGGCAGCACATACTGGACCAATCGACCGTCCATGTGGGCC
TTCGATGGGTCATCTTTGCGGCGATGCTCACGCTCTACGCCGTGCGGGTC
TTCTACATCAACGGATGGTTCATCGTCACCTACGGACTTGGCATCTATCT
TCTCAACAATTTCATCGGCTTCCTCTCACCGCAAATGGATCCAGAATCGG
AAGGCCCGTTGCTCCCTACGCAGGAGTCGGAGGAATACCGCCCGTTTGCC
CGCCGTTTGCCCGAATTTAAATTTTGGTACCAGTGCGCCAAGGCGACGTG
GATCGCGTTTACCATGACATTTTTTGAATTTTTCGACGTGCCTGTATACT
GGCCCATTCTTCTCCTGTATTTCGTAAGCCTCTTCATCTTGACGATGAAG
AGGCAGATCCGGCATATGATCAAGCATCGCTACGTGCCGTGGAGTAATTC
CAAGGCCCGGTATGCGGGGGCGGGGGAGAAGAGAGCAACGCCACGCCAGG
CCGCGCGAGTGAGGCGTGGCCTTCTCCCTATCTCCTTGCCTGCGTGCCAG
CGGAAAGACCTTTGTCGACTCTCAAGATTGAGGCCAGCAATATCTGTCCG
GGAAATTGCTTTGAAAGGGCGCATCCAAAGGGGCCACGGAGGAGCACCAA
GGGATGGATGGAAGACGCTCTGTCGTGTTCACGATGTGGAAAAGATGGGG
AAGGTGGCACATGCTCCACAGGGGTGGCCGCCCCGGGATAAAGCGAGGGG
CGTAAAGCAGAGAGAAGGCGAGAAAGGAAGGCGAGGAGATGGTCGAGCGC
CAGGCTTGCAGCTTTCAAAGAACCATACCACAAAGTGCGCTGCAAAAGGT
CATCTTAACCCAACGCTGGTGCACACAGCGCCAAAAATGTGTTAA
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protein sequence of rna3184

>rna3184-protein ID=rna3184-protein|Name=rna3184|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MARLSLQVVLVVAVFPIVAPVIVYFVCIFSIGSSKMDFFIAGNLHAALSS
SRHCLCTFRTLCRVTTPMPLGNFWASAMTAPVVLGGSVATASTSCQRWIQ
MVSQSIGRRHSNILFGSPAPRPLIPPRLKTLDIAASPSRQVPFVVRCTDI
FHV
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mRNA from alignment at CM002460.1:942949..945086+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3184 ID=rna3184|Name=rna3184|organism=Nannochloropsis gaditana|type=mRNA|length=2138bp|location=Sequence derived from alignment at CM002460.1:942949..945086+ (Nannochloropsis gaditana)
AGGCCTGGAAGCTTGGTAATACATAGGTAGGACGATTGGGGAGTGGCTTT
TGATGCGCTGAAGAAGCTACGTGTGAGGTGTTGAATGGGTACTGTTGCGG
GGGTAAATCCGCCGAAGCAGCCGAGCACGAAGCAGTCAGCCCATCTGACG
CTCGGAAGCTTGCTCCGGTGTGAATATCTTTGGCGCTGCTAGAATCGATA
GTATATTGAAAAGTGTGGTCTTTACCATTCCTATTCGGGTGCCCGTCCCC
GCTCTTTGTCTTTGCAACCAGACTGTCGCTACGGAGGTCCGCCAAGATGG
CCGTCACGTCGTGGTCACTGAGAGGGACCGGGGATTGAATGCGCAACGCC
GCCCGGCCTTGATGACGCACAGGATAGATTGACGCTTGAATGTGTGGATT
AAAAACAGGCGGCGATGGTGTATGCCTCCCTGTGCTGTGTGGATTGCAGT
CTCTCGATCGATTCTTGCCCGTGTCCATCTCTATCATGGCTAAAGCGGCT
TCAATGCGTGCCCGCTTTGAGGCTTCCTCTTGTACCGCGCGCGAATAAGG
ATCAGTGGGGCAACGGACAGCGCGTCCCGACTTAGAAAAAGAGAGCACTG
ATTCCCCCGCACCAAAATGGCAAGGCTTTCCCTTCAAGTTGTTCTGGTCG
TCGCCGTCTTCCCCATAGTCGCTCCCGTAATAGTATATTTCGTTTGCATC
TTCTCCATTGGAAGCTCGAAAATGGACTTCTTCATCGCTGGCAATCTGCA
tgctgctctctcctccagtCGTCATTGCCTTTGCACTTTTCGCACGCTTT
GTAGGGTTACGACGCCGATGCCGCTTGGGAACTTCTGGGCCTCCGCCATG
ACCGCCCCTGTTGTTCTCGGCGGAAGCGTGGCCACGGCTTCGACTTCGTG
CCAACGTTGGATCCAGATGGTGAGCCAGAGCATAGGCAGAAGACATTCGA
ACATCCTTTTTGGGTCGCCCGCGCCCAGGCCGCTTATCCCACCACGCTTG
AAAACCCTGGATATAGCCGCGAGCCCGAGCAGGCAAGTACCTTTCGTGGT
ACGTTGCACAGATATTTTTCATGTATAAACGAACCTTTTCCGCATCAATG
CCCGGATACAGTGGAAGATTGAGCCGAAGAAACTGCTGATATCCCGAAGG
ATTTCCCTTATGGTCGTGGCCCCAGGCGATAAAGGCCTCGACGCACTTAC
TGGCCAACTCCTTCGGCATATTGTGCAGCCGCCGGTCTTCGTCCTGGGGC
CCAGAGCTGCTGTGACTGATTGTAGTGGATCCCAAACTGCTGGTGGAGCT
TGTTGTCAATGAAGAGAATGAAGCCGAGAGGCTGGGCGCATGAGCATGAA
GATTCGATGCTTTAATTttccccccgggccccgtctcttttttttgggtA
TGGTTGCTCTCATCCCCATCCTCGGCAAATTTCTCTTCCGTGTAGCGGCT
ATAACGAACAACCTTAGCTTGTTGCTCTCCATGCTGCCTTGCGTCTTTTT
TGTGGACCTCTGTATTCATTCCCGTGGATGTAGTACTAGTGGTGCCGGCA
GATGTGGGACTTGGCAAGTTAATGCCCGAAGCGAAGATCGGAGGATGGCA
AGATGTGGCCGCTGCAGGCACATCAGCGACAGAGCGATAATAAGTGTTCA
TGACGGTTTGTAAGAGAGTCGGGCGTGATCAAGATTTCTATCCTACGTGG
CATGTATTAAAGCGCTAGTGAGTGCACAAGAATTGAGTAAAACGAGGCAT
TCACACGACTGCTGTGTTTGCCAGGCCTTATGAACTATCCATTATAGATC
TGGCTATATTGTCCCACGCTTTTTGTGAGTACTTCAACCCTATTATTTAA
AACAATGTCCTTGAAACAGTATCCGCCGTAGGCGCATTGTAGGCGAAAAA
AAACATGTAGCGAGGTTGATGGCGATGAGTAAATGCTTTTGAGCGCTCAG
CATATTTCCAAATTTCGGCCACTAGACCAAACTCGGGAGCCTGCTGGTAA
ATTAGTTAGAACAAAGGATATTACGGATGCCCCTGTGCATTGTAACACCT
GAGGATATGTAGGGGCTCGCTGACGCCCAACCAATGCCTAGACGAGGCCA
AAGCACATGGGCGACGGAACTTCATGTCCAAAATCACA
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Coding sequence (CDS) from alignment at CM002460.1:942949..945086+

>rna3184 ID=rna3184|Name=rna3184|organism=Nannochloropsis gaditana|type=CDS|length=462bp|location=Sequence derived from alignment at CM002460.1:942949..945086+ (Nannochloropsis gaditana)
ATGGCAAGGCTTTCCCTTCAAGTTGTTCTGGTCGTCGCCGTCTTCCCCAT
AGTCGCTCCCGTAATAGTATATTTCGTTTGCATCTTCTCCATTGGAAGCT
CGAAAATGGACTTCTTCATCGCTGGCAATCTGCAtgctgctctctcctcc
agtCGTCATTGCCTTTGCACTTTTCGCACGCTTTGTAGGGTTACGACGCC
GATGCCGCTTGGGAACTTCTGGGCCTCCGCCATGACCGCCCCTGTTGTTC
TCGGCGGAAGCGTGGCCACGGCTTCGACTTCGTGCCAACGTTGGATCCAG
ATGGTGAGCCAGAGCATAGGCAGAAGACATTCGAACATCCTTTTTGGGTC
GCCCGCGCCCAGGCCGCTTATCCCACCACGCTTGAAAACCCTGGATATAG
CCGCGAGCCCGAGCAGGCAAGTACCTTTCGTGGTACGTTGCACAGATATT
TTTCATGTATAA
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Synonyms
Publications