rna318, rna318 (mRNA) Nannochloropsis gaditana

Overview
Namerna318
Unique Namerna318
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1181
Alignment locationCM002455.1:787420..787852 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100003g179.1815.mrna
Orig protein idgnl|cribi|Naga_100003g179.1815
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:787420..787852 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100003g179gene307Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30298.1cds318Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna318rna318-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna318 ID=rna318|Name=rna318|organism=Nannochloropsis gaditana|type=mRNA|length=1181bp
GAGGAGCTCGAGGCCCCGGCGGGTCGGAACCCTCTCGGAGACGCTGCAGC
GCTTCCATCCCTCAGCCGGAACTTTCCATCGCCCCCCCTCGCACGCGACC
CTCGCTCTTCACAACACCCTCCCGTACGATGTCGTTCGTTTCGAAATCAA
CAAACAGGGCCGTTTGTTGGCGGAAAACTCGCTCGCAGCCATTTTCACGG
CCGCAGTCCTAGGCTTGTAATCGTTAAAATGGGTGTCCGCGACAGTGGCA
ACGGTTTATACTCGGGAATGTACTTTGACGGAGACCGGCCAGCATCCCTA
TACAACAAAAATGTAGAATGGCTACGATACCCACACTTTTGGTGGCTGTA
TCTCGGCTTCGTGGCCTTTTTTGTGACGCTGCTTCGGCTGACAGTGCTGA
GCAAGCCGGAGGATTTGGGGAGGGTACTGACGGTGACGCACGTAGTACAC
AACATGGTATTTTTCTATCTGTTCCATTGGATCAAGGGCTCCCCCGATAA
CTTTAGCCAAGGTGAATTCAATGGATTAACATTGTGGGAGCAGATCGAGG
ATGGAATTCCATGGACCAAAACGAAAAAACTTTTCTTCCTTGTGCACACG
GCGCTGGTTTTTGCGGCATCCTACGTAACCGATTACGACTTCAGCTATCT
CGCGATCAACGCCCCTGTCTACGTTTTTCTAGGAATCATACCCAAAATTC
CGGAGATGCACCGTGTCCGTGTTTTTGGGTGGAACAAGACGGCAGGCATC
GATGACGTGCCCGATGACCTGCTTTCCTCTCCATCGCGACCAACCGCCAC
GGCAGCTGGAGGCGCTGCTGCTGCAGGAAAGAAAAATCGCTGAGACACAG
ACACAAAGCGAGATGGAATTGAAACGAATCTCGTGGTTTATACATAAATC
AGGCAGGGAGGAGGGCAGATTGCGAATGGATTCTGCGCGTTGAACATTGG
AAGGCGTCATGGGTTTTCTGTATCACTCGCCTCATGTAGGATAGTGCGCG
GTTTGCAGCAATCTGGGGACAATTAGATAAATGAAACTGTATAAAATCAA
CACAAGTTTGCCTTCTTACGAGGGGTGCAGACGTTAGCTTTCGCCAGACG
GCCATCAGCCCCGAGTTATCCTACTATGTGGCTGAGATGAGAAAAGCATC
GAAAGAATAAATTCAAGTGGAGAAATTGCGA
back to top

protein sequence of rna318

>rna318-protein ID=rna318-protein|Name=rna318|organism=Nannochloropsis gaditana|type=polypeptide|length=69bp
MWGRSSFQLRRTGTYARTCTQNARDSFHPASRDLRRRHVAMGWTESIVLS
QISFNRWHRKGSQQPFSKN
back to top

mRNA from alignment at CM002455.1:787420..787852-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna318 ID=rna318|Name=rna318|organism=Nannochloropsis gaditana|type=mRNA|length=433bp|location=Sequence derived from alignment at CM002455.1:787420..787852- (Nannochloropsis gaditana)
CGCTTACAAAGGGGACAACGCGTGTAGACACCTGCCCCGGCACGACTCAG
GGAGCCCCCCACGCAGTTGTCCCGAGGAACCGACCGTCGTTTGTTTATAA
ACGTTTTGTTGATGTGGGGCAGGTCCTCGTTCCAGCTCCGTAGAACTGGA
ACATACGCGAGGACTTGCACGCAAAATGCCAGAGACAGCTTCCACCCAGC
CAGCAGGGACCTCCGCCGTCGCCATGTCGCGATGGGCTGGACTGAAAGCA
TAGTACTATCCCAGATCTCTTTCAATCGATGGCATCGCAAGGGATCACAA
CAACCATTCTCGAAGAATTGAAAGAAAATTGTGGGTCTGTACGCTAAACC
TACTCTGCATGGAAGCAAGAGGGAGGCACATTTGAATGTAAATTCATACT
GAAGCAAAAAGAAGTACATGAAAACCTTTCTGA
back to top

Coding sequence (CDS) from alignment at CM002455.1:787420..787852-

>rna318 ID=rna318|Name=rna318|organism=Nannochloropsis gaditana|type=CDS|length=210bp|location=Sequence derived from alignment at CM002455.1:787420..787852- (Nannochloropsis gaditana)
ATGTGGGGCAGGTCCTCGTTCCAGCTCCGTAGAACTGGAACATACGCGAG
GACTTGCACGCAAAATGCCAGAGACAGCTTCCACCCAGCCAGCAGGGACC
TCCGCCGTCGCCATGTCGCGATGGGCTGGACTGAAAGCATAGTACTATCC
CAGATCTCTTTCAATCGATGGCATCGCAAGGGATCACAACAACCATTCTC
GAAGAATTGA
back to top
Synonyms
Publications