rna3175, rna3175 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3175
Unique Name	rna3175
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1160
Alignment location	CM002460.1:923483..925826 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100099g1.8525.mrna
Orig protein id	gnl\|cribi\|Naga_100099g1.8525
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:923483..925826 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100099g1	gene3052	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3175	rna3175-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27489.1	cds3167	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:923483..925826+
coding sequence from alignment at CM002460.1:923483..925826+

mRNA sequence

>rna3175 ID=rna3175|Name=rna3175|organism=Nannochloropsis gaditana|type=mRNA|length=1160bp
TTTCCGCACGTGCCCGGCTATCCATGACTTGACACTTTGCCATGTCCCAC
GCCTCCCTCTTGACCCTCATATGGCTACAGGTGGGGCGGCCGTATGGATT
GGAAATTACCGCCGGCGCTTGGGGCACATGCTGGGAGCGGAGGAAACGCC
GGGGTGGAAATGGGTTTAGAGGCACCTTCGCCGTCTTTCTCCCTTGCAGC
AACTAGTCAGGGCACTGGAATGGTCGCACACCCTGGGAGCAGCAATGGTG
ACGCCGGCGATAGAGCTATGAATCTCACTCTTGGGTCCTCTTTTGAAGCC
GCTGCGTCGATGGCACGTGCCGGACTTAAACCCGGCTATGGAGAGGGAGC
TTACTACCCTCAGGCCCCTTTGGCGACGGCCTGGTCCCCGGACGCCCACC
CGCTCTGCCACGCGCTCCTAATGACACCCTCCGGGATGACGGGTCGTGTT
GAAGCCCATCGACGCCGTCAAGGAGGACGGGGGGAGGGAAATGAGTGGGG
CTCGTCCCCCGGGGTGACGGATGAGTTTTTGATTGGATTGTCTGATGGGA
GCCAGGGAGTATTGCCGGAATCGATGCTTCGAACGTGCATAGAGCGCCTG
GAGGCACACACTGCTGGGAACCAAGCACAGCTTCAAACTCTCAGGGAGAG
GGATGCGGAGGGTGAAAACGGGGCAGGCAGAGGAGGGAGCGGCGTGGGAG
AGGGAGCATGGGAAGGAGGGGGAGGAGGACAAGGAGGAGGCCAGGGGCCG
GGAACTGCGAAGGCTGTGACGAAGCGCGCACAGAAAGCGCAAGGTCAGCA
GCGTCGGGAGACGGGCGGAGGGAAAAAGGGGGGCCGCGCGGGTGGCACAG
GCGTCACAGGAGCCCCTGTTGAGCGCTTGTGCGTGCCCCTCCCTAGGGCC
CCCGCCGGCAAAGCCTCCTTGACGCCCGAGGAAAGGAGACGCTGCTTGGA
ATTCGTCCGGCGCTTGGCCAGCCCATATTTCGCCAGGGACTTTTGCCACC
CGGTGTCGGAGCTGCATCCGGAGGTGTGGGAAGAGGTGAGGAGGGAGATG
GGTTCATCGGGCTTGTCGGGAAGGAGATTCTTCGGCATTTTTCGGGATTT
GTCGGCGCTGTATCTTTCGGGGGGCAATATTACATGAGCTTGTATGCATG
TGTGTTGTTG

protein sequence of rna3175

>rna3175-protein ID=rna3175-protein|Name=rna3175|organism=Nannochloropsis gaditana|type=polypeptide|length=614bp
MGTAAAAAAEKPEEEAPTADTCPTEMDCADAGAFLPSSSPSGSSIDPSPP
VPPSLPPAAPPPAATGIDPGTGKSQGESNGAIHRDGRGLSESRAPSAGKS
HPRASGVTRRAMGVLQPHRPRHPQHPSHHPHYPYHAQHLVRGSTGPLPPQ
GPFAATSLPPPSRRGQGIGGRSGEGGRGSGTSPSSASLVHAHSPRDPRQG
QRPQARHPCRQPQPMPAADVRAGPLRPTPLPEADYRLAGPHEAASSKSHT
SALSFVVPQAGATGGLSVSWSSVAAGGALGRAGRQEGQRLLQPQAHRQQQ
PTAKTHRGGSSTSKGQEWPQSGTVAALSSHSHLLGAPQPSRSPHVQAAGP
TPKHPVRPLTPPASSAPVASGAYANGRGGGIRTSVAGTLSSLPSSSPPSP
PFLPQRASPLAAAGAYSPRRGREGEPATSLGHGMPGDRESEAGSANTSPA
SFSSSSSTRSCLGPPPLYTFYLEDGPGMGPSLSPAPASTPAPPLRIPPPC
SISPSTPSTTSSPFSASSPPSSASVTLASSLAYGFQDANGMGHASGSSSA
PLSPVVWSKTPSLGSPDIARGVCEEQREGGREGGGGKDAQRANEALEMSM
MSIANQISTSILDF

mRNA from alignment at CM002460.1:923483..925826+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3175 ID=rna3175|Name=rna3175|organism=Nannochloropsis gaditana|type=mRNA|length=2344bp|location=Sequence derived from alignment at CM002460.1:923483..925826+ (Nannochloropsis gaditana)
ATggggacggcggcggcggcggcggcggaaaagcccgaggaagaggcccc
AACGGCCGACACATGCCCCACCGAGATGGATTGCGCAGATGCCGGTGCTT
TCTTGCCTTCCAGCTCGCCCTCTGGGTCCTCGATCGACCCTTCgccgccc
gtccctccctccctccctccggcggcGCCTCCACCCGCGGCCACGGGAAT
CGATCCTGGGACGGGCAAGAGCCAAGGCGAAAGCAACGGAGCGATCCACA
GGGATGGACGTGGGCTCTCCGAGTCGCGGGCTCCATCGGCGGGCAAGAGC
CACCCAAGGGCCTCGGGCGTTACCAGACGTGCCATGGGCGTGCTCCAGCC
CCACCGACCGCGACACCCCCAGCATCCATCGCACCATCCGCACTACCCTT
ACCATGCGCAGCACCTTGTGCGTGGAAGCACCGGCCCACTTCCCCCTCAG
GGGCCTTTCGCGGcaacgtccctccctcctccttcccgccgtgGCCAGGG
GATTGGAGGGcgaagcggggagggggggaggggctcggGCACGTCCCCTT
CCAGCGCCTCTCTCGTCCACGCTCATTCTCCGCGGGATCCCAGACAGGGG
CAGCGGCCCCAAGCCCGGCATCCGTGCCGGCAGCCGCAGCCCATGCCTGC
GGCGGACGTGCGTGCAGGCCCCCTTCgccccacccctctccccgagGCCG
ACTACCGCCTGGCCGGTCCGCATGAAGCCGCGAGCAGCAAGAGTCACACG
AGTGCCCTGTCCTTCGTCGTGCCGCAAGCGGGGGCGACTGGCGGGCTTTC
CGTCTCTTGGTCgtcggtggcggcgggcggcgcgCTTGGGCGGGCAGGGC
GGCAGGAAGGACAGCGTCTTTTACAGCCACAAGCACAtcgacagcagcag
cccaCCGCAAAGACGCACAGAGGCGGCTCATCAACCTCCAAGGGACAGGA
ATGGCCCCAGTCGGGAACAGTCGCGGCCCTGTCTTCTCACTCCCATCTGC
TCGGCGCCCCGCAACCCTCCCGGTCGCCGCACGTACAGGCCGCGGGGCCC
ACGCCGAAGCACCCAGTGAGGCCCCTCACTCCCCCTGCCAGCTCGGCGCC
GGTCGCTTCCGGGGCCTACGCgaacgggaggggaggcggaatcCGCACGT
CGGTCGCGGgcaccctgtcctccctcccgtcctcttcccctccctcgccc
ccctttcttcctcagcGCGCCTCCCCGCTTGCCGCCGCTGGCGCCTACAG
CCCtaggagagggcgggaaggggagccaGCCACCTCCCTCGGTCACGGCA
TGCCTGGAGacagggagagcgaggcgggCAGTGCCAACACCTCGCCCGCg
agcttttcctcctcctcctccacccggtCCTGCctgggcccgccccccct
gtaCACCTTCTACCTCGAGGACGGCCCTGGCatgggcccctccctctccc
ccgccccggccagcacgccagcccctcccctgcggataccccccccctgt
tcgatctccccttccactccctccaccacctcctcccctttctctgcctc
ttcgcccccttcctcggcatCTGTcacgctggcctcctcccttgcctacG
GCTTTCAAGATGCAAATGGGATGGGGCATGCCTcggggtcttcctccgct
cctctttctcccgtgGTGTGGTCAAAAACTCCGTCGTTGGGGTCCCCGGA
CATTGCGAGGGGAGTCTGCGAAGAacagagggaaggcgggagggaaggag
ggggcggaaaggacgCTCAGCGCGCGAACGAGGCTTTGGAAATGAGTATG
ATGTCGATTGCGAACCAAATATCTACCAGTATCCTCGATTTTTGAAGGGA
ATGTGTGATACAATTCACATGATGGGGCGACTCGAGGTAAGACCTAGTGC
CGTGACGCCTTTGATAAGAGAGAGTCTCGCAAAGGTTGAGCAAATTGGAA
GGGTgggtgagaagggaagggtggagtaCGGAGCTCCGCTGCGCCCATGA
CTTTTTTGTTGCATGTCAAGCGATGGAGAGGCCATGTGAAATCAGAAAGA
CAGTGCGAGGTACCGACGCTTTAATTCAGGGAAGAATGTGGTAAGGAAGA
GGATATCCTGCAGGGTGAGACGCCCGAGGAGGGCTATGGGACACGGGGGC
AAGGGTAGAAAGAGCGTCCGTGCTTCTTGATCAGGTCTAGATTAGCGCGA
CGGAAAAGCTGAAGGCGTGCGAAAAGACGTTTTGGGAATAAGAGTAGGAA
AAAACAGAATGAAAAggcgaaaaggagaggacTGGTGTGCAGGAAGAGGA
TTCAACCCTCCAAAAAGAACGATGCAACCgtttgggggaaaagg

Coding sequence (CDS) from alignment at CM002460.1:923483..925826+

>rna3175 ID=rna3175|Name=rna3175|organism=Nannochloropsis gaditana|type=CDS|length=1845bp|location=Sequence derived from alignment at CM002460.1:923483..925826+ (Nannochloropsis gaditana)
ATggggacggcggcggcggcggcggcggaaaagcccgaggaagaggcccc
AACGGCCGACACATGCCCCACCGAGATGGATTGCGCAGATGCCGGTGCTT
TCTTGCCTTCCAGCTCGCCCTCTGGGTCCTCGATCGACCCTTCgccgccc
gtccctccctccctccctccggcggcGCCTCCACCCGCGGCCACGGGAAT
CGATCCTGGGACGGGCAAGAGCCAAGGCGAAAGCAACGGAGCGATCCACA
GGGATGGACGTGGGCTCTCCGAGTCGCGGGCTCCATCGGCGGGCAAGAGC
CACCCAAGGGCCTCGGGCGTTACCAGACGTGCCATGGGCGTGCTCCAGCC
CCACCGACCGCGACACCCCCAGCATCCATCGCACCATCCGCACTACCCTT
ACCATGCGCAGCACCTTGTGCGTGGAAGCACCGGCCCACTTCCCCCTCAG
GGGCCTTTCGCGGcaacgtccctccctcctccttcccgccgtgGCCAGGG
GATTGGAGGGcgaagcggggagggggggaggggctcggGCACGTCCCCTT
CCAGCGCCTCTCTCGTCCACGCTCATTCTCCGCGGGATCCCAGACAGGGG
CAGCGGCCCCAAGCCCGGCATCCGTGCCGGCAGCCGCAGCCCATGCCTGC
GGCGGACGTGCGTGCAGGCCCCCTTCgccccacccctctccccgagGCCG
ACTACCGCCTGGCCGGTCCGCATGAAGCCGCGAGCAGCAAGAGTCACACG
AGTGCCCTGTCCTTCGTCGTGCCGCAAGCGGGGGCGACTGGCGGGCTTTC
CGTCTCTTGGTCgtcggtggcggcgggcggcgcgCTTGGGCGGGCAGGGC
GGCAGGAAGGACAGCGTCTTTTACAGCCACAAGCACAtcgacagcagcag
cccaCCGCAAAGACGCACAGAGGCGGCTCATCAACCTCCAAGGGACAGGA
ATGGCCCCAGTCGGGAACAGTCGCGGCCCTGTCTTCTCACTCCCATCTGC
TCGGCGCCCCGCAACCCTCCCGGTCGCCGCACGTACAGGCCGCGGGGCCC
ACGCCGAAGCACCCAGTGAGGCCCCTCACTCCCCCTGCCAGCTCGGCGCC
GGTCGCTTCCGGGGCCTACGCgaacgggaggggaggcggaatcCGCACGT
CGGTCGCGGgcaccctgtcctccctcccgtcctcttcccctccctcgccc
ccctttcttcctcagcGCGCCTCCCCGCTTGCCGCCGCTGGCGCCTACAG
CCCtaggagagggcgggaaggggagccaGCCACCTCCCTCGGTCACGGCA
TGCCTGGAGacagggagagcgaggcgggCAGTGCCAACACCTCGCCCGCg
agcttttcctcctcctcctccacccggtCCTGCctgggcccgccccccct
gtaCACCTTCTACCTCGAGGACGGCCCTGGCatgggcccctccctctccc
ccgccccggccagcacgccagcccctcccctgcggataccccccccctgt
tcgatctccccttccactccctccaccacctcctcccctttctctgcctc
ttcgcccccttcctcggcatCTGTcacgctggcctcctcccttgcctacG
GCTTTCAAGATGCAAATGGGATGGGGCATGCCTcggggtcttcctccgct
cctctttctcccgtgGTGTGGTCAAAAACTCCGTCGTTGGGGTCCCCGGA
CATTGCGAGGGGAGTCTGCGAAGAacagagggaaggcgggagggaaggag
ggggcggaaaggacgCTCAGCGCGCGAACGAGGCTTTGGAAATGAGTATG
ATGTCGATTGCGAACCAAATATCTACCAGTATCCTCGATTTTTGA

Synonyms

Publications