rna3168, rna3168 (mRNA) Nannochloropsis gaditana

Overview
Namerna3168
Unique Namerna3168
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1048
Alignment locationCM002460.1:902431..904387 -

Link to JBrowse

Properties
Property NameValue
Productnotchless protein
Orig transcript idgnl|cribi|Naga_100101g5.9047.mrna
Orig protein idgnl|cribi|Naga_100101g5.9047
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:902431..904387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100101g5gene3045Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27509.1cds3160Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3168rna3168-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3168 ID=rna3168|Name=rna3168|organism=Nannochloropsis gaditana|type=mRNA|length=1048bp
ATGCACAGATCTCTCGCACGCCATGCCCGCTTCCTTACATTTGGGTAGAA
GCAGTCGAATGATGCTGCAAAATTTGGTGCGCAGGAGGAGTGGTGGCACT
CTCAGTGGGGCCGTGGGCAGCTCCCCCTCCAACCTCCCCTCCTCTCTCCT
ACTCCATCGCATGCGCGCCACGGGCACACCACCACTGGCACCCTTGTCCT
CCTCAGGCACTTCCAGGAAATCTGAGAGTGTCTTCGAGATGAGGAATGTC
GTGAAAGTGACGACAAATTCTCGCATGGCGAATAGGGAGGACACGAAAGC
AGCCGTCCAGACGGCGTTGGAGGGCCGAGAAGCCCGCAGAGTCGACCCCA
TCCTATTCAAAGGCATATTTCCGAGCAGTTCTTGGCTGGTTGAGCTTTCG
TCTCGCGAGGACGCAGAGCGTCTGCTGCAATTTAAGCGAATACACGCGGG
AGGCGGGTGGATGAAAGTGGAGGCACTGAAGGATGATGGAGCCGCCGGGC
TGGAGCTGGCATCGCAGCAGGGGTTGGATGATCGCTGCATTCAATTGCAG
CACGTCCCTCCAAATATGGGAGTTGACGAGGTCGCTTATTTCTTTCGCGA
TTTCCAAGTGAACCCGAAGAGTATACGGCAAGTGGGGTCGATCAAGCCGC
AGGCGAGTCTGAGCGCCTGGGAGAGAAAGACGGGAAGCGCACGCACGGGC
TCCTCCAGCTTTGTGATGTGCTTCACCACAGCAGACGAGGCACAACGCGC
CATTCGGGAGCGTCAGTTTGAGCGGTGGGGCGATCGGAGGATACAACTCG
TCCCCTACAAATAGGGAGGGGCGGGGCGCCTTGGAGAGGGTGATCGAGGG
GTTCTAGTATAGGGCAGGCTTGTGGAAGGGCCCCCCTCTTGGAAGACCCC
TTGAGGACATTGACGCAACAAACAACTGAGCGAGTTTGAGGGCTTACTTT
GCAAAATTGTGTTAATTTTGTGCGGGTGTAGATTAGTTGGCAGTTGGCCC
GAATGCCAGCCCTAGAGGTCAGGCACCATACATTGCCGACACAGGAAC
back to top

protein sequence of rna3168

>rna3168-protein ID=rna3168-protein|Name=rna3168|organism=Nannochloropsis gaditana|type=polypeptide|length=544bp
MGFVYFFYLTLQRTRRFLETTSPVTLLRTPSMTSEALPPPASELHVTKKA
KKLPTLPGSMVVQFQDATGKQTGPRIDLPTDSTPAQLELLINELRKATDP
TEESQGKVPYSCYINDVEVLDSLRDTLESQGIVNGEAVININYQPLAVFR
VRPVVRCTDTMPGHTEAVIHVSFSPDGRRLASGGGDTTVRFWDTGTSLPK
FTCRGHRHHVLCTAWSPDGSRFASADKAGEIRLWDPATGLAVGQPLQGHK
QHITSLAWEPLHLNRGKGERLASSSKDGTVRVWNVRTGACLTTLAQHTNS
VECCKWGGQGVLYTGSRDRTVKIWALQGRDGEAGFGKLVKTLVGHGHRIN
TLALNTDYVLRTGPFDHTGSLALDAASPMEAAEAKYRKFLEGSEGRERLV
SGSDDFTLFLWDPLGEEGGKKPLARMTGHQQAVNHISFSPDGRYVASASF
DKKVKTWDGRTGRFLSTLVGHVGAVYMVAWSPDSRLLVSASKDSTLKLWD
VAKGAKAKETLPGHMDEVYALDWAPNGASVASGSKDRTIKIWRA
back to top

mRNA from alignment at CM002460.1:902431..904387-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3168 ID=rna3168|Name=rna3168|organism=Nannochloropsis gaditana|type=mRNA|length=1957bp|location=Sequence derived from alignment at CM002460.1:902431..904387- (Nannochloropsis gaditana)
GGCAGTGGTGTGCTTGTTAGGTACGTGCAGCGTGATTTTAGCATGGATTG
TTTTGAATCATGGGTTTCGTTTACTTTTTTTACCTAACATTGCAGAGGAC
GCGGCGCTTTTTGGAAACTACCTCCCCTGTCACATTGTTGCGTACACCAA
GCATGACGAGTGAGGCTTTGCCCCCCCCGGCCTCCGAACTTCATGTCACG
AAAAAGGCAAAAAAGCTACCAACACTACCAGGGTCCATGGTCGTCCAATT
TCAGGACGCAACTGGAAAGCAAACGGGGCCTCGCATTGACTTACCTACCG
ATTCGACGCCGGCACAGCTTGAGCTTTTGATCAATGAGCTCCGGAAAGCT
ACCGACCCCACGGAAGAGTCCCAAGGAAAGGTTCCATACTCATGCTATAT
CAACGACGTGGAGGTCTTGGACAGCTTGCGGGATACATTGGAAAGCCAAG
GAATCGTTAACGGAGAAGCCGTCATCAACATCAACTACCAGCCCTTAGCC
GTCTTTCGAGTGCGCCCCGTTGTCCGTTGCACCGACACCATGCCCGGGCA
TACAGAGGCCGTCATACACGTGTCCTTTTCACCCGATGGTCGACGACTGG
CCAGCGGCGGCGGCGACACCACGGTCCGCTTCTGGGACACCGGGACCAGC
CTACCCAAGTTCACGTGCCGGGGACACCGACACCACGTCCTGTGCACGGC
CTGGTCCCCCGATGGCTCGCGTTTTGCCTCGGCAGACAAGGCGGGAGAGA
TTCGTCTGTGGGACCCGGCGACGGGCCTGGCGGTGGGACAGCCGTTGCAG
GGGCATAAACAGCACATCACGTCCTTGGCGTGGGAGCCTTTGCATTTGAA
CCGGGGGAAAGGCGAGCGTCTGGCCTCCTCCAGCAAGGACGGAACGGTGC
GCGTTTGGAACGTGCGGACGGGGGCATGCCTGACCACGCTGGCGCAACAC
ACCAATTCGGTGGAGTGCTGCAAGTGGGGCGGCCAGGGTGTGCTCTACAC
AGGGTCACGCGACCGGACTGTCAAAATCTGGGCGCTCCAAGGACGGGACG
GTGAGGCAGGCTTTGGGAAGCTGGTCAAGACCCTGGTGGGGCACGGGCAT
CGGATCAACACGCTGGCGCTGAACACCGACTACGTGCTGCGGACGGGCCC
CTTCGACCACACGGGGAGCTTGGCCCTGGACGCGGCCTCCCCGATGGAGG
CCGCTGAAGCCAAGTACCGGAAGTTTCTTGAAGGCTCGGAGGGGAGGGAG
CGGCTGGTCTCTGGCTCCGACGACTTTACCTTGTTTTTGTGGGACCCTCT
GGGAGAGGAGGGGGGGAAAAAGCCCCTGGCCCGGATGACAGGGCACCAGC
AGGCCGTGAACCACATCTCCTTCTCCCCGGATGGGCGGTATGTGGCCAGC
GCCTCCTTCGACAAGAAGGTCAAGACCTGGGACGGACGGACGGGACGCTT
CCTCTCCACGCTGGTGGGCCACGTGGGCGCCGTGTACATGGTGGCTTGGT
CCCCCGACAGCCGTTTGTTGGTGAGTGCCAGCAAGGACAGCACCTTGAAG
CTGTGGGACGTGGCCAAGGGCGCCAAGGCGAAGGAGACGCTCCCGGGGCA
CATGGACGAGGTTTATGCCCTTGACTGGGCACCCAACGGTGCGAGCGTGG
CCTCGGGGAGCAAGGACCGGACCATCAAAATATGGCGGGCGTAAGAGGGG
TCATGGGGGGCGGGAGGGTTCGTAATGGGGAGAGGGAGGCAGTCCGCCCA
CGGGGCCGGACAGGAAGGCTTGTATTTCAGGAGGGGTCCCTGGTCTCTCG
TGACGGAGGGATCAAAGTACATGTACGGATAGAAAGATATGGGCCCGGTC
AAATGTTCCTGTGTCGGCAATGTATGGTGCCTGACCTCTAGGGCTGGCAT
TCGGGCCAACTGCCAACTAATCTACACCCGCACAAAATTAACACAATTTT
GCAAAGT
back to top

Coding sequence (CDS) from alignment at CM002460.1:902431..904387-

>rna3168 ID=rna3168|Name=rna3168|organism=Nannochloropsis gaditana|type=CDS|length=1635bp|location=Sequence derived from alignment at CM002460.1:902431..904387- (Nannochloropsis gaditana)
ATGGGTTTCGTTTACTTTTTTTACCTAACATTGCAGAGGACGCGGCGCTT
TTTGGAAACTACCTCCCCTGTCACATTGTTGCGTACACCAAGCATGACGA
GTGAGGCTTTGCCCCCCCCGGCCTCCGAACTTCATGTCACGAAAAAGGCA
AAAAAGCTACCAACACTACCAGGGTCCATGGTCGTCCAATTTCAGGACGC
AACTGGAAAGCAAACGGGGCCTCGCATTGACTTACCTACCGATTCGACGC
CGGCACAGCTTGAGCTTTTGATCAATGAGCTCCGGAAAGCTACCGACCCC
ACGGAAGAGTCCCAAGGAAAGGTTCCATACTCATGCTATATCAACGACGT
GGAGGTCTTGGACAGCTTGCGGGATACATTGGAAAGCCAAGGAATCGTTA
ACGGAGAAGCCGTCATCAACATCAACTACCAGCCCTTAGCCGTCTTTCGA
GTGCGCCCCGTTGTCCGTTGCACCGACACCATGCCCGGGCATACAGAGGC
CGTCATACACGTGTCCTTTTCACCCGATGGTCGACGACTGGCCAGCGGCG
GCGGCGACACCACGGTCCGCTTCTGGGACACCGGGACCAGCCTACCCAAG
TTCACGTGCCGGGGACACCGACACCACGTCCTGTGCACGGCCTGGTCCCC
CGATGGCTCGCGTTTTGCCTCGGCAGACAAGGCGGGAGAGATTCGTCTGT
GGGACCCGGCGACGGGCCTGGCGGTGGGACAGCCGTTGCAGGGGCATAAA
CAGCACATCACGTCCTTGGCGTGGGAGCCTTTGCATTTGAACCGGGGGAA
AGGCGAGCGTCTGGCCTCCTCCAGCAAGGACGGAACGGTGCGCGTTTGGA
ACGTGCGGACGGGGGCATGCCTGACCACGCTGGCGCAACACACCAATTCG
GTGGAGTGCTGCAAGTGGGGCGGCCAGGGTGTGCTCTACACAGGGTCACG
CGACCGGACTGTCAAAATCTGGGCGCTCCAAGGACGGGACGGTGAGGCAG
GCTTTGGGAAGCTGGTCAAGACCCTGGTGGGGCACGGGCATCGGATCAAC
ACGCTGGCGCTGAACACCGACTACGTGCTGCGGACGGGCCCCTTCGACCA
CACGGGGAGCTTGGCCCTGGACGCGGCCTCCCCGATGGAGGCCGCTGAAG
CCAAGTACCGGAAGTTTCTTGAAGGCTCGGAGGGGAGGGAGCGGCTGGTC
TCTGGCTCCGACGACTTTACCTTGTTTTTGTGGGACCCTCTGGGAGAGGA
GGGGGGGAAAAAGCCCCTGGCCCGGATGACAGGGCACCAGCAGGCCGTGA
ACCACATCTCCTTCTCCCCGGATGGGCGGTATGTGGCCAGCGCCTCCTTC
GACAAGAAGGTCAAGACCTGGGACGGACGGACGGGACGCTTCCTCTCCAC
GCTGGTGGGCCACGTGGGCGCCGTGTACATGGTGGCTTGGTCCCCCGACA
GCCGTTTGTTGGTGAGTGCCAGCAAGGACAGCACCTTGAAGCTGTGGGAC
GTGGCCAAGGGCGCCAAGGCGAAGGAGACGCTCCCGGGGCACATGGACGA
GGTTTATGCCCTTGACTGGGCACCCAACGGTGCGAGCGTGGCCTCGGGGA
GCAAGGACCGGACCATCAAAATATGGCGGGCGTAA
back to top
Synonyms
Publications