rna3167, rna3167 (mRNA) Nannochloropsis gaditana

Overview
Namerna3167
Unique Namerna3167
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2921
Alignment locationCM002460.1:901486..902533 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100101g6.9052.mrna
Orig protein idgnl|cribi|Naga_100101g6.9052
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:901486..902533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100101g6gene3044Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3167rna3167-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27514.1cds3159Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3167 ID=rna3167|Name=rna3167|organism=Nannochloropsis gaditana|type=mRNA|length=2921bp
GGAAGGGAAGGAGGGGAGACGACACCGGTCGTGCACGCCTTTGGCCGGGA
GCTTGGGCACCTCCGTCGGCTTTTATCGGCGGTGGAGCACCTAACCCTCC
ATCTGGAGGAGGAGCGGGAATGCATGGCATTCTTCTTCGAGGACGTTTTT
GGCGCCAAGGGCCGCTTGGACCCTCGGGACCGGCGAGGGGAGGACGTGGA
GGTCACGTTCTCGCTCCCCGCGCTTCAGAGCATGCTGGTCGCCTGTCGAG
AGGAAGTGGAGACATGGAAAAGACGCTCATCTCCCCTCCACAGGCCTCCG
AGTAAGCGGGAGCGTCAGGCTCAGGAACACCTGAGAGTCCTACGGAGGGC
GATGGAGGCCACCCTTCCGCCTTCCGACCCTCCCCTCGCTACCGAAGCCC
TGGCTGCGGCTTTCCAGGAGAAATGGACGCTCATGGTCCGAGCGGTGGAC
GAGGGGGAAGCTTTGGTGCAGGACAACGCCGAAATGGCGGCAGCCCTGGA
GGAAAGGCAGGAAAGCGCACGCGCGCGGTTGCAGCAGGTGGAGAAGGACT
GGGCGGCCCGGGTCGCGAAGACAAAGGAGGAATTGGACATTTTGCGGGAA
GCTGTGGTGGTGATGCTGGTAGAGTTGGGGGTGGAACGCCCGACATCGTC
CACGTCCTCGTCCTCGAAGGCGTCCGCCTCCTCTTTCCTGTCTTCCTCCA
TCGCGGGTAAATCGAACTCACACCTGGCCCGCTCCCTGGTCGAGTCTTTG
TCCGCGTGTAAGACGCGCTTGCTCCTGGAGGTCACGAAATCGACCGAGGA
GGAGGCGAAGGAGGGCGGGGCCGAGGTCCAGGGGGCGATGCTGCGGGGAC
GGGGAAGGGACGTTGGAATGGAGGCGGGGAATACCGGGGGTGCGACAGGC
TCGGAGGGCTCCAGCTTGAGTCTTGTGCACTTACTGGAAAAGTTCTATGG
GGCCGTCCATGCTGCACACCGGCACAAGCATGGTCTGCAAATCCGCTTGG
AGGCGTCTGAAGGAGAAAAGGAAGCGGAGGTGGGAGCACTGAAAGGGCGT
CTGAAGGGATTGCTGCGATTGGAAGAAGCTGTGCAGGGTGTGCTCAACGA
TGTGTTTCACCACCCCGTACTCGGGCAGTTTGTACCCGCTGGCACCAACT
CGAGCCAGAGAAAAGGAGGACGTTGCGTCTCCCCCAAAACGAGAGAGGAT
GCACAGGACATGGGCTTGCGCCTACAGCAATTAGTCACCGCCTTAGGGAG
GGAGCTAGACCGACGGGAAAGCGACCTTGAGGGGGTATGGCGGGAGGCAG
AGTCAATTCAAAGGAAATACGAGGCTGCTTTAGAGCAGTCAGAGAGTGAG
CTCGGTGTTTTGCGAAAGGTGTCACAAACGTATGAGGAGGCTTTAGTCGG
AGCGTTCGGGTCGGGGGTGGAAGAGGAGGGAGAAGAAGAGGGCGGACAGG
CACTGGAAGGAGACGATGGTCAGAGAAAGAAGAAGCAGAGGAAGCAGAAG
AAGCCGAGTTTGACGGGGAATGTGCGCGGTCGTACAGGTGCAGGTGAGGC
TGCCGCACAAAGCATCGAGCTTGCTGGGCGTGTGCGGGAGTTTGTACAAA
AATTACGCCGAGAACAGGAAAAAGCAATGCAAAAATGCTGCGAGACTGAA
GAAGCGCGGGTAGTAGAAAGGACAGAGTTGTCGGAAGAGTCAATGCGCTG
GAAAGGAAAGGCAGCTCTGTACCTCCGATTGTTAACTTCTTTGGAGGACG
CAGCGCGCAGCCTGGTGGTGGACGGTGTCAAGAAACGGGTGAAAATGAGC
TCGCCCGGTGGGACGAAGAAAAGCAAAGCTTTGAGGACACGAAACAGGGA
GGGCGCAACGGAGGACCACCTGGGTACAAGCAAACACCAGGATTGGCCAA
CTCCTATTCTGAGTTTGGACACAGCGTTGGAGCTGGAACAGTCTCGGGGA
GCGGGTTCCATCGAGCTCCTCTGCGGCCAGCTTTTGCAATACAGCCACCA
GGCGAGCAGATTCTACGGCGACGCAAACGGGAAGGCGGAGCGCCTTCACG
AGTCTTTGGTCGAGAAGGAACATGAGAGTCAGGGTTTGCGGAAGGCGCTG
CATGCGAAATCGATGGCACTCGCTGACCTGAAGGAGAAAGCCAGGGCGTC
GTTCGAAGAGGTCGTTCGGCTGAAGCGAAAAATTACCACGCAGGAAGCTG
ACGTCTCCTCCCTCGTGTTAAGCATCAGTCGTGTGTCCGAGAAGCTCACT
CATCGGCGGTCAGTCTCCGGGCCCCCCGGCTCCATCCCAGAGACCGGGCA
TGTCTGCTTTGAAGACAGTGTTGGCGATCAAGTCGATGGGAGCCGCCACC
AGACTCGCTCTCAAACTGCACGAGCTTCTCAGATGGAAGACCAAACACAA
AGTCTTGTGGGTAAATACCAAGAGGAGTTAGAGCGCATGCAGGCCCTAGG
GGAGGAGCAAGCGAAGACCATCGAGGCACTTGTTGCTCGGAACGCCTTGC
TGGAGGAGGAAGGGCGGGAGGGATGGCCAGAGGAGCTGGAGCATGTCAAG
GCGGCCAAGGAGGTAGTAGAGCAACAGCTCCAAACTTTGCGGCGGGGCTT
GGCGGCCCGGGAAAAGGAATGGGCGGCAACACTGAGCGCGGTAAATAAAG
AGCGAGAGCGATTGCAACGGAAGTGTGGGAAGCAGCAGCAGGCCATGCAG
GTCTTGACGGAGCAGGTGGACCATGGCCGCATAGACGCGGAGACTGAGAT
CCTTCAGGTGAAGACATTGCACGAGACGAGATGAATATGCAAAAATGTAA
CATGTGTGTGCTTATGAGGTTGTTAACAGCCATGGACGACGACAAATTGT
CGGAAAAAGTAACTTTGTGCATGCGAAGGGAGTATATGTTATGTGGCTAT
TTCTTTAATCGCATATGCCTC
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protein sequence of rna3167

>rna3167-protein ID=rna3167-protein|Name=rna3167|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MPASLHLGRSSRMMLQNLVRRRSGGTLSGAVGSSPSNLPSSLLLHRMRAT
GTPPLAPLSSSGTSRKSESVFEMRNVVKVTTNSRMANREDTKAAVQTALE
GREARRVDPILFKGIFPSSSWLVELSSREDAERLLQFKRIHAGGGWMKVE
ALKDDGAAGLELASQQGLDDRCIQLQHVPPNMGVDEVAYFFRDFQVNPKS
IRQVGSIKPQASLSAWERKTGSARTGSSSFVMCFTTADEAQRAIRERQFE
RWGDRRIQLVPYK
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mRNA from alignment at CM002460.1:901486..902533+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3167 ID=rna3167|Name=rna3167|organism=Nannochloropsis gaditana|type=mRNA|length=1048bp|location=Sequence derived from alignment at CM002460.1:901486..902533+ (Nannochloropsis gaditana)
ATGCACAGATCTCTCGCACGCCATGCCCGCTTCCTTACATTTGGGTAGAA
GCAGTCGAATGATGCTGCAAAATTTGGTGCGCAGGAGGAGTGGTGGCACT
CTCAGTGGGGCCGTGGGCAGctccccctccaacctcccctcctctctcct
acTCCATCGCATGCGCGCCACGGGCACACCACCACTGGcacccttgtcct
cctcagGCACTTCCAGGAAATCTGAGAGTGTCTTCGAGATGAGGAATGTC
GTGAAAGTGACGACAAATTCTCGCATGGCGAATAGGGAGGACACGAAAGC
AGCCGTCCAGACGGCGTTGGAGGGCCGAGAAGCCCGCAGAGTCGACCCCA
TCCTATTCAAAGGCATATTTCCGAGCAGTTCTTGGCTGGTTGAGCTTTCG
TCTCGCGAGGACGCAGAGCGTCTGCTGCAATTTAAGCGAATACACGCGGG
AGGCGGGTGGATGAAAGTGGAGGCACTGAAGGATGATGGAGCCGCCGGGC
TGGAGCTGGCATCGCAGCAGGGGTTGGATGATCGCTGCATTCAATTGCAG
CACGTCCCTCCAAATATGGGAGTTGACGAGGTCGCTTATTTCTTTCGCGA
TTTCCAAGTGAACCCGAAGAGTATACGGCAAGTGGGGTCGATCAAGCCGC
AGGCGAGTCTGAGCGCctgggagagaaagacggGAAGCGCACGCACGGGC
TCCTCCAGCTTTGTGATGTGCTTCACCACAGCAGACGAGGCACAACGCGC
CATTCGGGAGCGTCAGTTTGAGCGGTGGGGCGATCGGAGGATACAACTCG
TCCCCTACAAatagggaggggcggggcgccTTGGAGAGGGTGATCGAGGG
GTTCTAGTATAGGGCAGGCTTGTGGAAGGGCCCCCCTCTTGGAAGACCCC
TTGAGGACATTGACGCAACAAACAACTGAGCGAGTTTGAGGGCTTACTTT
GCAAAATTGTGTTAATTTTGTGCGGGTGTAGATTAGTTGGCAGTTGGCCC
GAATGCCAGCCCTAGAGGTCAGGCACCATACATTGCCGACACAGGAAC
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Coding sequence (CDS) from alignment at CM002460.1:901486..902533+

>rna3167 ID=rna3167|Name=rna3167|organism=Nannochloropsis gaditana|type=CDS|length=792bp|location=Sequence derived from alignment at CM002460.1:901486..902533+ (Nannochloropsis gaditana)
ATGCCCGCTTCCTTACATTTGGGTAGAAGCAGTCGAATGATGCTGCAAAA
TTTGGTGCGCAGGAGGAGTGGTGGCACTCTCAGTGGGGCCGTGGGCAGct
ccccctccaacctcccctcctctctcctacTCCATCGCATGCGCGCCACG
GGCACACCACCACTGGcacccttgtcctcctcagGCACTTCCAGGAAATC
TGAGAGTGTCTTCGAGATGAGGAATGTCGTGAAAGTGACGACAAATTCTC
GCATGGCGAATAGGGAGGACACGAAAGCAGCCGTCCAGACGGCGTTGGAG
GGCCGAGAAGCCCGCAGAGTCGACCCCATCCTATTCAAAGGCATATTTCC
GAGCAGTTCTTGGCTGGTTGAGCTTTCGTCTCGCGAGGACGCAGAGCGTC
TGCTGCAATTTAAGCGAATACACGCGGGAGGCGGGTGGATGAAAGTGGAG
GCACTGAAGGATGATGGAGCCGCCGGGCTGGAGCTGGCATCGCAGCAGGG
GTTGGATGATCGCTGCATTCAATTGCAGCACGTCCCTCCAAATATGGGAG
TTGACGAGGTCGCTTATTTCTTTCGCGATTTCCAAGTGAACCCGAAGAGT
ATACGGCAAGTGGGGTCGATCAAGCCGCAGGCGAGTCTGAGCGCctggga
gagaaagacggGAAGCGCACGCACGGGCTCCTCCAGCTTTGTGATGTGCT
TCACCACAGCAGACGAGGCACAACGCGCCATTCGGGAGCGTCAGTTTGAG
CGGTGGGGCGATCGGAGGATACAACTCGTCCCCTACAAatag
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Synonyms
Publications