rna3145, rna3145 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3145
Unique Name	rna3145
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2023
Alignment location	CM002460.1:840609..842471 -

Link to JBrowse

Properties


Property Name	Value
Product	1-acyl-sn-glycerol-3-phosphate acyltransferase
Orig transcript id	gnl\|cribi\|Naga_100015g9.6409.mrna
Orig protein id	gnl\|cribi\|Naga_100015g9.6409
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:840609..842471 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g9	gene3023	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27593.1	cds3137	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3145	rna3145-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:840609..842471-
coding sequence from alignment at CM002460.1:840609..842471-

mRNA sequence

>rna3145 ID=rna3145|Name=rna3145|organism=Nannochloropsis gaditana|type=mRNA|length=2023bp
ATCCCTTGTCTGACATTCCAAGAGGAGCGACCTCCAGAACCGTCTCGACC
TCAGCCTCCCACCTACTTATTGCACGCCACGAGCCACGCTAATCCCAACA
CTATGGTACCACAACACCCTACAGCCCCATAAATAATGCGTAGCACGACA
AGCGACCAGGCGGACGACGGAGTGTCCGCGCCCCCGCCCGAAACTGAGGA
AGAAAACACGCCCCCGTCCGGAGGGGATATTGAGGGTGTCGAAGAGACTG
AGCCCGCAGCGAACGGAGACGGGGCCACGGAGGCCCACGACCCTGGCAAT
GACAATAGCAGCGGCAGCAAAAAGAAGAGCGAGGCGGTGGAAACGTCGGA
TGCGGACGGGCAGCCGGCAACCAAGCGGCGTAAGGGCGATGAGATGAGCA
TTCCTACAGCGTTGGAGGGGTCGCCACCTTCTACGTCCACGGCAACGCCA
GACGGGGAAGACAAGCTGAAAGAGGCCGAAGATATCATGAAATCTATCAT
TGAGAAGCAAAGAGAGCTTCAAGAAGCAAAGGAAAAAGCACAAAAGCGTC
TGAACGAGCAACTTTCGGCCACGCGCGGGAAGCCCCTGGCCTCTGCAACG
AAAACCTCCGTCCTCCCCTCCCCCTCCCCTTCCTCCACGGAATACTATGC
GTCTGCCGTGCAGGCGGCCACTGCGGGTATATCCTCCCCTCGAGCCCCCC
TTTCTAGTACGACCCCCCCTGTTATGGGAGGAGCGTCTGGGGCAGGCGCC
AGACCGTCGGCCAGTAACGATGCTTGTCGCATCTACGTGGGTAGCTTGCA
CTACGACCTGAAGGAAGACGACATCAGGAAAGTCTTCGCGCCCTTTGGGG
CGATCCGATCCATCAATATGTCGTTCGAGCCCGGCACGGGACGGAGCAAG
GGTTTTGCGTTCGTGGACTTCGAGCAGGCGGAAAGCGCAACCATGGCGCT
CCAGACCATGAACGGCTTTCAATTGGCGGGGCGGACCTTGAAGGTGGGCA
GGCCGACGCCGGGAGGCAGTGGAGGGGCGGGAGGACGGCAACAGGGGCAA
CAGCAACAGCTGCAGCAGTCCGCGGTATACGGGGGTTTGCCGGGAGCTGG
ATTTGGAGCACAGCGGGTCGGAGGGGGAGGGGGAGGCGCTCGCGTCTACG
TGGGCTCGATTCCCTTCGAGGTTTCGGAGGAGGTGGTACGCGGATTGTTT
CAATCATTCGGCAAGATACGCTCGTTTTCTCTCTTGCCCGACCCGCAGAT
GAATCCAGGAAGACTGCACCGAGGGTACGGCTTCATTGAATTTGACAGCG
AGCAGGCGGCAGCCACGGCGATCCAGACCATGCAGGGCTTCGAACTGCAA
GGACGGGCGATGAAAGTGGGTTGGGCAGCCCCCGTGGGGGGAAGCGGGGG
AGCGCCACCGGCAAGCGGGGCGCCGAGCATGGCAGGAGCGGGCACTTACG
TGCAACAGCAGCAAGCGCTCAATTTGTTGACGGGACAGTACTACGGGCAG
GGGGTGATGCCAGCGGGGATGTACGCGCCCCAACCCCAGCAACAACAGCA
GCAACAACCGCCCGCTTTGATGTATCAGCAGCCCCAGCACCAGTATTTGC
AACAGTACCAACAGATGCAACAGCAGCAACCGCAGCCACAAGGCCAACCC
CAGGGGCAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCAGCAGATGTA
CTACGCCCAAAGCGCTGCGGCCTACGGCCCTGGGAGGTCTTAAGTGCTTA
AAGAGAAAGAAAGATAAGCAGGGCTGTGGGAGGGATTTGAGTAGCGGGTA
AGCTGATCTCTTCTATCGCAAAAAAGATTGAGTCACAGACAATTAAGGGG
TGGGGAGCGGCGTCTGAAGCAATTTCAGTGCTGAAGCCAGGGCTCGGCGT
TGACAGCGCTAGTGGTGCTGGAGTGAATGACGCGATACTAATCTGTAATG
AAAGCTGTCACTGAACTTCACGGATATCAGGCACACGTGTGTGTGACGGG
AAGATGTGAGGTTGGAAGCTAGC

protein sequence of rna3145

>rna3145-protein ID=rna3145-protein|Name=rna3145|organism=Nannochloropsis gaditana|type=polypeptide|length=476bp
MAKKQEDARSDAPGETSDKSNLSPNGPSSDPSARETSTQSLSVDTTPSSS
TAALSSSSAKKFSARLQDIRTSASKVQPLTNAQKRGFYFKAEMLWQAVQD
GLPADDPDHDSLLAAIDSFESEMLSLNPVRLASSFLPRILQRVDMLVRMV
TCCVFFCLMGVLTFLPMITIAPILDSLLKLVGWPHQYLTNALFQKAVGRG
FLYLAGVFYTEEGKAKGGYRTPLVVLFQHGSNLDGFLFLDSFPQFFKSIG
KDDIYLMPYVGWLAYVIATLPIDRRHRNEAIKQLGRATRACASGTAVALS
PEGTRSKTGQLMRFKKGPFYVQAESRASIAPVVIQGTFELWPPKYFFTCP
GQVRMKYLPPIDPDSLPAKVGKNKEELSRFVRRQMFDAIEDLTVEASSGG
KGRNPSAAPLTWFQRALNVVSMCLFWWVVRIVWVLVTSVSDARGVSRAAL
AGAFLSYTITVTASLYILYCKRPASL

mRNA from alignment at CM002460.1:840609..842471-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3145 ID=rna3145|Name=rna3145|organism=Nannochloropsis gaditana|type=mRNA|length=1863bp|location=Sequence derived from alignment at CM002460.1:840609..842471- (Nannochloropsis gaditana)
ATTGCATGACAATTAAATATTTTGGACAGAAAACCGTGCTGGACTGTAGT
CGTTGTGCATGAGTCGGGCACTCTCTAGGTTTGTATTTGCACTGTCGAGA
AGGCGGCGGCTCGCGCTTCACTTGTCCTCTTCTGCTCGTCCATCGTGATC
ATTCCTTACATCTTGTTGTTGCGTGGAAGGGAAAACTGTTCTAATCATTA
CTCTGCTTGAATACATAATTATGCTGAAGACAGTCAGAAGGCATGGCAAA
GAAGCAGGAGGACGCAAGAAGTGATGCCCCAGGAGAAACGTCCGACAAGA
GCAACCTCAGTCCAAACGGGCCCTCCTCTGATCCCTCGGCGCGTGAAACC
AGCACTCAATCTCTCAGCGTCGACACCACACCCTCCTCATCTACCGCTGC
ATTAAGCTCCTCATCTGCGAAGAAATTCTCGGCACGATTGCAGGATATTC
GAACTTCCGCCTCCAAAGTCCAGCCACTAACCAATGCGCAGAAACGTGGT
TTTTATTTCAAGGCTGAAATGCTCTGGCAGGCTGTCCAGGATGGGTTACC
TGCCGATGATCCAGATCACGACTCTTTGCTTGCAGCTATCGATTCTTTCG
AGAGTGAAATGCTTTCTCTCAATCCCGTGCGGCTCGCCTCCTCCTTCCTC
CCACGTATTCTTCAACGTGTCGACATGCTAGTGCGGATGGTCACCTGTTG
CGTCTTCTTCTGCCTGATGGGCGTCCTGACCTTCCTCCCGATGATAACTA
TCGCACCCATTCTCGACTCGCTCCTCAAGCTCGTGGGCTGGCCGCACCAG
TACCTGACAAACGCACTTTTTCAGAAGGCAGTAGGACGAGGGTTCCTCTA
CCTCGCTGGAGTCTTCTACACGGAGGAGGGAAAGGCTAAAGGCGGCTACC
GCACACCTCTGGTAGTTTTGTTTCAGCACGGCTCGAATCTGGATGGCTTT
TTGTTCCTGGACTCGTTCCCGCAATTTTTTAAATCCATTGGCAAGGACGA
TATATATCTCATGCCTTACGTAGGCTGGCTGGCCTATGTGATAGCGACAT
TGCCCATCGACAGGAGGCATCGCAACGAAGCCATCAAACAGCTTGGGCGG
GCAACTCGCGCGTGTGCGTCTGGCACAGCAGTAGCTTTGAGCCCGGAGGG
CACTCGCAGCAAGACCGGGCAGTTGATGCGGTTTAAAAAAGGGCCATTCT
ACGTGCAGGCCGAGAGCAGAGCCTCTATTGCCCCGGTGGTCATCCAAGGA
ACCTTCGAGTTATGGCCCCCCAAATACTTCTTTACGTGTCCTGGGCAGGT
TCGTATGAAGTATTTGCCTCCCATCGACCCGGATTCCCTCCCTGCAAAGG
TGGGAAAGAATAAGGAGGAGCTGAGCCGGTTTGTTCGTCGGCAGATGTTC
GACGCAATTGAGGACTTGACGGTAGAGGCGAGCTCGGGGGGGAAAGGGAG
GAATCCATCCGCGGCACCTTTGACATGGTTTCAGCGTGCTTTGAACGTTG
TGAGCATGTGCCTGTTTTGGTGGGTAGTAAGGATAGTGTGGGTTCTGGTG
ACGAGCGTGAGCGATGCCCGCGGTGTCAGTAGGGCGGCGCTGGCTGGCGC
GTTTTTGAGTTATACCATCACGGTCACTGCTTCCTTGTATATCTTGTATT
GTAAGAGGCCGGCCTCCTTGTAAGGGGCTCTAGTGGGAGGAGGAACGATA
GGCGGGGAAGTCCATGTTCTAGCGGAGGATTTCATAACTACTTTGTCAGC
TAACAGTGCGGGTACGTCAGGCTTACAGTCGTGGAGTTGGAGATGGGAAA
GTTAAAGATGAAAATGAAAAAGTGCCAGCTCTTAAAAGGAATTTTGAAAT
AAAACATGTTTCC

Coding sequence (CDS) from alignment at CM002460.1:840609..842471-

>rna3145 ID=rna3145|Name=rna3145|organism=Nannochloropsis gaditana|type=CDS|length=1431bp|location=Sequence derived from alignment at CM002460.1:840609..842471- (Nannochloropsis gaditana)
ATGGCAAAGAAGCAGGAGGACGCAAGAAGTGATGCCCCAGGAGAAACGTC
CGACAAGAGCAACCTCAGTCCAAACGGGCCCTCCTCTGATCCCTCGGCGC
GTGAAACCAGCACTCAATCTCTCAGCGTCGACACCACACCCTCCTCATCT
ACCGCTGCATTAAGCTCCTCATCTGCGAAGAAATTCTCGGCACGATTGCA
GGATATTCGAACTTCCGCCTCCAAAGTCCAGCCACTAACCAATGCGCAGA
AACGTGGTTTTTATTTCAAGGCTGAAATGCTCTGGCAGGCTGTCCAGGAT
GGGTTACCTGCCGATGATCCAGATCACGACTCTTTGCTTGCAGCTATCGA
TTCTTTCGAGAGTGAAATGCTTTCTCTCAATCCCGTGCGGCTCGCCTCCT
CCTTCCTCCCACGTATTCTTCAACGTGTCGACATGCTAGTGCGGATGGTC
ACCTGTTGCGTCTTCTTCTGCCTGATGGGCGTCCTGACCTTCCTCCCGAT
GATAACTATCGCACCCATTCTCGACTCGCTCCTCAAGCTCGTGGGCTGGC
CGCACCAGTACCTGACAAACGCACTTTTTCAGAAGGCAGTAGGACGAGGG
TTCCTCTACCTCGCTGGAGTCTTCTACACGGAGGAGGGAAAGGCTAAAGG
CGGCTACCGCACACCTCTGGTAGTTTTGTTTCAGCACGGCTCGAATCTGG
ATGGCTTTTTGTTCCTGGACTCGTTCCCGCAATTTTTTAAATCCATTGGC
AAGGACGATATATATCTCATGCCTTACGTAGGCTGGCTGGCCTATGTGAT
AGCGACATTGCCCATCGACAGGAGGCATCGCAACGAAGCCATCAAACAGC
TTGGGCGGGCAACTCGCGCGTGTGCGTCTGGCACAGCAGTAGCTTTGAGC
CCGGAGGGCACTCGCAGCAAGACCGGGCAGTTGATGCGGTTTAAAAAAGG
GCCATTCTACGTGCAGGCCGAGAGCAGAGCCTCTATTGCCCCGGTGGTCA
TCCAAGGAACCTTCGAGTTATGGCCCCCCAAATACTTCTTTACGTGTCCT
GGGCAGGTTCGTATGAAGTATTTGCCTCCCATCGACCCGGATTCCCTCCC
TGCAAAGGTGGGAAAGAATAAGGAGGAGCTGAGCCGGTTTGTTCGTCGGC
AGATGTTCGACGCAATTGAGGACTTGACGGTAGAGGCGAGCTCGGGGGGG
AAAGGGAGGAATCCATCCGCGGCACCTTTGACATGGTTTCAGCGTGCTTT
GAACGTTGTGAGCATGTGCCTGTTTTGGTGGGTAGTAAGGATAGTGTGGG
TTCTGGTGACGAGCGTGAGCGATGCCCGCGGTGTCAGTAGGGCGGCGCTG
GCTGGCGCGTTTTTGAGTTATACCATCACGGTCACTGCTTCCTTGTATAT
CTTGTATTGTAAGAGGCCGGCCTCCTTGTAA

Synonyms

Publications