rna3144, rna3144 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3144
Unique Name	rna3144
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2237
Alignment location	CM002460.1:837915..840600 +

Link to JBrowse

Properties


Property Name	Value
Product	PolyU-binding-splicing factor PUF60
Orig transcript id	gnl\|cribi\|Naga_100015g10.6355.mrna
Orig protein id	gnl\|cribi\|Naga_100015g10.6355
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:837915..840600 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g10	gene3022	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3144	rna3144-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27539.1	cds3136	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:837915..840600+
coding sequence from alignment at CM002460.1:837915..840600+

mRNA sequence

>rna3144 ID=rna3144|Name=rna3144|organism=Nannochloropsis gaditana|type=mRNA|length=2237bp
GGGTGGCCCCTTGCCTTGCCCGCTTGGGGTGGTGCACGGAGATTCAGCAC
GGTGTTCACAGACGCGGTGGCCGCGGGAAGGCGTCACGTGCTGTGTTTAG
GTCTTTTCGTGTCGGTTACGGCATGTGCCGTGAGGGAGGAGGAATTCCAG
CACTTCGAGAGGGAGATACCCTCGCTCCGCCGCCGCAATGCCCGAACCGA
CCATAAAACCCAAACTTGCACGGCTCACCGCTCGCGATCGTTGAATGTGA
CCGCAGAGATGATGTTTAAAGGTCGACCAGGACCCTTTTTGCGTGTCAAT
GTGCCCACTTTGTCCCCGTAATCAAGGCTTCTCTTGCAACAGACTTTCTC
CGCCTCCGTATTCAACAGACTCGCAGCAGCACGCAGCAAACAACGGTCAC
CATGATCACGCATATGTCCCGTCGCCTCCGCAATACCGTGGCTCCATCCA
TGAAGTCACTGGCCACGCGGGGTATGGCATCCATTCAGGAGACCCTCACG
GAGCTTGTGCCCGTCAAGCAAGCCGAGCTCGTCGCTCTGAAAAAAGAGCA
CGGACACAAGGTCATCGGCGATGTAACCGTGGATCAATGCATTGGGGGCG
GGCGAGACATCAAGTCTCTTTTCTGGGAAACTTCGCTCCTGGACGCGCAA
GAGGGCATCCGCTTCCGAGGCTATTCGATCCCGGAGCTGCAGCAGAAGCT
CCCCACCTTCAAAGGGCCTGCCGGACAGGGAGAACCCACCCCAGAGGCCT
TGGTCTGGCTGATGCTCACAGACACGATCCCTACCAAGGCAGAAGCGGAC
TCCTTGACGCATGAGCTTTACAAGCGTTCCGAGATCCCCCAGCACGTGGT
CGCGCTCCTCAAGTCCTTGCCCAAGTCGCTCCACCCGATGAGCCAGTTGG
TCGTGGGCCTCATGGCTCTGCAGAAGGACAGCAAATTCGCGGCGGCCTAC
GCGAGCGGCGTTCACAAGAAGGAATATTGGAAGCACACGCTGGAAGACAT
CCTGGACGTATGGGCCAAGCTGCCAGAGCTCGCAGCTTTGGTGTTCAGCA
ACACGTACAAAGACGGGTCTGTCGGGAGCAAGGATCCTTCCCTGGACTAC
TCCGCCAATTTCGCCCGGCGTCTGGGCTACAATAAACCCGAGTTCGACGA
GCTCATGCGCCTGTACCTCGTCATCCATTCCGATCACGAGGGAGGGAATG
CCTCGGCGCATACCACTCACCTGGTCGGCTCGACCCTCTCCGACCCCTAC
CTGTCCTACTCGGCGGGCCTCAATGCCTTGGCGGGCCCCCTGCATGGACT
GGCCAATCAGGAAGTGCTTGGGTGGATATTGGACCTGCAAAAGAAATTCA
AAGCGGAGGGGAAGCCTGTGAACAAGGAGACCATCACGCAGTTCGCATGG
GAGACACTCAAGTCGGGCAAGGTCATCCCGGGCTACGGCCACGCCGTGCT
TCGGAAAACCGATCCCCGCTACACCTCTCAGCGAGAGTTTGCCTTGAAAT
ACTTGCCGGATGACGAACTCTTCAAGATTGTGGGCACGATCTACGAGGTG
GTCCCGGACGTGTTGACGGAGCACGGGAAGACCAAGAACCCCTACCCGAA
CGTGGACTCCCACTCTGGCGTCTTGCTCTGGCACTACGGCTTCAAAGAGT
TCAACTACTACACGGTATTGTTTGGAGTTTCGCGGGCCTTGGGAGCCTTG
TCGCAGGTGTTTTGGGACCGGGCTCTGGGGATGCCTCTGGAGCGACCGAA
GTCTGTCACCTCTAAGTGGATCCTGGAGCATGTGAACAACAGCAAAAGTC
AGTAAAGCCGGCACAAGAGCGCTTTCTTGGCTCGCATCCAGCTACGCGGG
CATGGACCGGGCGAAGGGATGGGAAAAACTGATCCAATAAAGGACTACAA
GCCAGGTATGGTGAAAGACGGATGGGAGAGCGTGTTTTTCGACACGGAGG
AGCATTGGCAGCTCGGGGAAAGAAGCAGGGCGGCTTGTGGGGGGAATCCA
TCGGTCAATTTTGGCGGTTTGAAACCTTTAAGGTATGATTCCTGTGATGA
TCGCAGCCGCGGGAGTAGAACAGCAGCATGCAAAAATAATCCGCTTGATG
GAGAGAAGACGAAGAGAAGGGAATGGAAATATCCAGAGGTGTACTGTCAA
GACTCGCGTCTCATTTTTAAGCTGGTTCACGAAAGAAATAGGAATTGAAC
AAATTCCCGTGCGTCCGTAAATTTGCGAAATAAGCGA

protein sequence of rna3144

>rna3144-protein ID=rna3144-protein|Name=rna3144|organism=Nannochloropsis gaditana|type=polypeptide|length=535bp
MRSTTSDQADDGVSAPPPETEEENTPPSGGDIEGVEETEPAANGDGATEA
HDPGNDNSSGSKKKSEAVETSDADGQPATKRRKGDEMSIPTALEGSPPST
STATPDGEDKLKEAEDIMKSIIEKQRELQEAKEKAQKRLNEQLSATRGKP
LASATKTSVLPSPSPSSTEYYASAVQAATAGISSPRAPLSSTTPPVMGGA
SGAGARPSASNDACRIYVGSLHYDLKEDDIRKVFAPFGAIRSINMSFEPG
TGRSKGFAFVDFEQAESATMALQTMNGFQLAGRTLKVGRPTPGGSGGAGG
RQQGQQQQLQQSAVYGGLPGAGFGAQRVGGGGGGARVYVGSIPFEVSEEV
VRGLFQSFGKIRSFSLLPDPQMNPGRLHRGYGFIEFDSEQAAATAIQTMQ
GFELQGRAMKVGWAAPVGGSGGAPPASGAPSMAGAGTYVQQQQALNLLTG
QYYGQGVMPAGMYAPQPQQQQQQQPPALMYQQPQHQYLQQYQQMQQQQPQ
PQGQPQGQQQQQQQQQQQQQMYYAQSAAAYGPGRS

mRNA from alignment at CM002460.1:837915..840600+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3144 ID=rna3144|Name=rna3144|organism=Nannochloropsis gaditana|type=mRNA|length=2686bp|location=Sequence derived from alignment at CM002460.1:837915..840600+ (Nannochloropsis gaditana)
ATCCCTTGTCTGACATTCCAAGAGGAGCGACCTCCAGAACCGTCTCGACC
TCAGCCTCCCACCTACTTATTGCACGCCACGAGCCACGCTAATCCCAACA
CTATGGTACCACAACACCCTACAGCCCCATAAATAATGCGTAGCACGACA
AGCGACCAGGCGGACGACGGAGTGTCCGCGCCCCCGCCCGAAACTGAGGA
AGAAAACACGCCCCCGTCCGGAGGGGATATTGAGGGTGTCGAAGAGACTG
AGCCCGCAGCGAACGGAGACGGGGCCACGGAGGCCCACGACCCTGGCAAT
GACAAtagcagcggcagcaaaaAGAAGAGCGAGGCGGTGGAAACGTCGGA
TGCGGACGGGCAGCCGGCAACCAAGCGGCGTAAGGGCGATGAGATGAGCA
TTCCTACAGCGTTGGAGGGGTCGCCACCTTCTACGTCCACGGCAACGCCA
GACGGGGAAGACAAGCTGAAAGAGGCCGAAGATATCATGAAATCTATCAT
TGAGAAGCAAAGAGAGCTTCAAGAAGCAAAGGAAAAAGCACAAAAGCGTC
TGAACGAGGTGCGTAGTAGATATCACACGGGTAattggaggggaaggaag
ggaaaggacgtGTATAATTGAGGCTTTCCAGTGAACCGATTCGTCTCCTC
GCTGCTTCTCTTGGTCTTTCTGGAATGGCCCCCCCCGGTTTTGTTCTTGA
TGCGTTCCTTCTGGCATGGTGCTGAGGTCTCTGGTACGGCGGCCCTCgga
tctccctctcctctcgccTCCAGTCACGTCCCGTGTGCCCCTCCCGCact
ctccctgtcctccctctcccgtccgTTCGCTTATCCTTGGCATCGGCAAT
GGCACGAAGCTCATCCGCTACTTCATCTCGCCTCGTTAGTGTCGGCATGC
GTCCTCGAAAGCTATGCCGGTCGGATGAGGAGACCCAGTGCAGATGCCGC
CCTGCTGGCACTCTGTGGGGGATACTGCCGGCGTCTCGGCAAGAGAAAGG
GCCAGGAGATTAGGAGACAGCCGTTTCCGCAGCAACCGCGAAAGTGAGCC
CTTCTAGTCTGGTCACCGTTGCCGCACTCTTTCCTAGTCGGgaccgccct
cgcctcgaCGTTGACCATAGCGCCTACCCAAATCGGCCCCGACAAGGAAG
CATTCGTGAGTCGTGTTTGAATCTATCGCCGCTCATGTATTTCTCCCTGT
CCACATATCACTTCACCACAGCAACTTTCGGCCACGCGCGGGAAGCCCCT
GGCCTCTGCAACGAAaacctccgtcctcccctccccctccccttcctcca
cggaaTACTATGCGTCTGCCGTGCAGGCGGCCACTGCGGGTATATCCTCC
CCTCGAGCCCCCCTTTCTAGTACGACCCCCCCTGTTATGGGAGGAGCGTC
TGGGGCAGGCGCCAGACCGTCGGCCAGTAACGATGCTTGTCGCATCTACG
TGGGTAGCTTGCACTACGACCTGAAGGAAGACGACATCAGGAAAGTCTTC
GCGCCCTTTGGGGCGATCCGATCCATCAATATGTCGTTCGAGCCCGGCAC
GGGACGGAGCAAGGGTTTTGCGTTCGTGGACTTCGAGCAGGCGGAAAGCG
CAACCATGGCGCTCCAGACCATGAACGGCTTTCAATTGGCGGGGCGGACC
TTGAAGGTGGGCAGGCCGACGccgggaggcagtggaggggcgggaggacg
gcaacaggggcaacagcaacagctgCAGCAGTCCGCGGTATACGGGGGTT
TGCCGGGAGCTGGATTTGGAGCACAGCgggtcggagggggagggggaggc
gctcGCGTCTACGTGGGCTCGATTCCCTTCGAGGTTTCGGAGGAGGTGGT
ACGCGGATTGTTTCAATCATTCGGCAAGATACGCTCGTTTTCTCTCTTGC
CCGACCCGCAGATGAATCCAGGAAGACTGCACCGAGGGTACGGCTTCATT
GAATTTGACAGCGAGCAGGCGGCAGCCACGGCGATCCAGACCATGCAGGG
CTTCGAACTGCAAGGACGGGCGATGAAAGTGGGTTGGGCAGCCCCcgtgg
ggggaagcgggggagcgCCACCGGCAAGCGGGGCGCCGAGCATGGCAGGA
GCGGGCACTTACgtgcaacagcagcaagcgCTCAATTTGTTGACGGGACA
GTACTACGGGCAGGGGGTGATGCCAGCGGGGATGTACGCGCCCCAACccc
agcaacaacagcagcaacaaccgCCCGCTTTGATGTATCAGCAGCCCCAG
CACCAGTATTTGCAACAGTACCAACAGatgcaacagcagcaaccgCAGCC
ACAAGGCCAACCCCAggggcagcaacagcagcagcagcaacaacagcagc
agcagcagatgTACTACGCCCAAAGCGCTGCGGCCTACGGCCCTGGGAGG
TCTTAAGTGCttaaagagaaagaaagataAGCAGGGCTGTGGGAGGGATT
TGAGTAGCGGGTAAGCTGATCTCTTCTATCGCAAAAAAGATTGAGTCACA
GACAATTAAGGGGTGGGGAGCGGCGTCTGAAGCAATTTCAGTGCTGAAGC
CAGGGCTCGGCGTTGACAGCGCTAGTGGTGCTGGAGTGAATGACGCGATA
CTAATCTGTAATGAAAGCTGTCACTGAACTTCACGGATATCAGGCACACG
TGTGTGTGACGGGAAGATGTGAGGTTGGAAGCTAGC

Coding sequence (CDS) from alignment at CM002460.1:837915..840600+

>rna3144 ID=rna3144|Name=rna3144|organism=Nannochloropsis gaditana|type=CDS|length=3216bp|location=Sequence derived from alignment at CM002460.1:837915..840600+ (Nannochloropsis gaditana)
ATGCGTAGCACGACAAGCGACCAGGCGGACGACGGAGTGTCCGCGCCCCC
GCCCGAAACTGAGGAAGAAAACACGCCCCCGTCCGGAGGGGATATTGAGG
GTGTCGAAGAGACTGAGCCCGCAGCGAACGGAGACGGGGCCACGGAGGCC
CACGACCCTGGCAATGACAAtagcagcggcagcaaaaAGAAGAGCGAGGC
GGTGGAAACGTCGGATGCGGACGGGCAGCCGGCAACCAAGCGGCGTAAGG
GCGATGAGATGAGCATTCCTACAGCGTTGGAGGGGTCGCCACCTTCTACG
TCCACGGCAACGCCAGACGGGGAAGACAAGCTGAAAGAGGCCGAAGATAT
CATGAAATCTATCATTGAGAAGCAAAGAGAGCTTCAAGAAGCAAAGGAAA
AAGCACAAAAGCGTCTGAACGAGCAACTTTCGGCCACGCGCGGGAAGCCC
CTGGCCTCTGCAACGAAaacctccgtcctcccctccccctccccttcctc
cacggaaTACTATGCGTCTGCCGTGCAGGCGGCCACTGCGGGTATATCCT
CCCCTCGAGCCCCCCTTTCTAGTACGACCCCCCCTGTTATGGGAGGAGCG
TCTGGGGCAGGCGCCAGACCGTCGGCCAGTAACGATGCTTGTCGCATCTA
CGTGGGTAGCTTGCACTACGACCTGAAGGAAGACGACATCAGGAAAGTCT
TCGCGCCCTTTGGGGCGATCCGATCCATCAATATGTCGTTCGAGCCCGGC
ACGGGACGGAGCAAGGGTTTTGCGTTCGTGGACTTCGAGCAGGCGGAAAG
CGCAACCATGGCGCTCCAGACCATGAACGGCTTTCAATTGGCGGGGCGGA
CCTTGAAGGTGGGCAGGCCGACGccgggaggcagtggaggggcgggagga
cggcaacaggggcaacagcaacagctgCAGCAGTCCGCGGTATACGGGGG
TTTGCCGGGAGCTGGATTTGGAGCACAGCgggtcggagggggagggggag
gcgctcGCGTCTACGTGGGCTCGATTCCCTTCGAGGTTTCGGAGGAGGTG
GTACGCGGATTGTTTCAATCATTCGGCAAGATACGCTCGTTTTCTCTCTT
GCCCGACCCGCAGATGAATCCAGGAAGACTGCACCGAGGGTACGGCTTCA
TTGAATTTGACAGCGAGCAGGCGGCAGCCACGGCGATCCAGACCATGCAG
GGCTTCGAACTGCAAGGACGGGCGATGAAAGTGGGTTGGGCAGCCCCcgt
ggggggaagcgggggagcgCCACCGGCAAGCGGGGCGCCGAGCATGGCAG
GAGCGGGCACTTACgtgcaacagcagcaagcgCTCAATTTGTTGACGGGA
CAGTACTACGGGCAGGGGGTGATGCCAGCGGGGATGTACGCGCCCCAACc
ccagcaacaacagcagcaacaaccgCCCGCTTTGATGTATCAGCAGCCCC
AGCACCAGTATTTGCAACAGTACCAACAGatgcaacagcagcaaccgCAG
CCACAAGGCCAACCCCAggggcagcaacagcagcagcagcaacaacagca
gcagcagcagatgTACTACGCCCAAAGCGCTGCGGCCTACGGCCCTGGGA
GGTCTTAAATGCGTAGCACGACAAGCGACCAGGCGGACGACGGAGTGTCC
GCGCCCCCGCCCGAAACTGAGGAAGAAAACACGCCCCCGTCCGGAGGGGA
TATTGAGGGTGTCGAAGAGACTGAGCCCGCAGCGAACGGAGACGGGGCCA
CGGAGGCCCACGACCCTGGCAATGACAAtagcagcggcagcaaaaAGAAG
AGCGAGGCGGTGGAAACGTCGGATGCGGACGGGCAGCCGGCAACCAAGCG
GCGTAAGGGCGATGAGATGAGCATTCCTACAGCGTTGGAGGGGTCGCCAC
CTTCTACGTCCACGGCAACGCCAGACGGGGAAGACAAGCTGAAAGAGGCC
GAAGATATCATGAAATCTATCATTGAGAAGCAAAGAGAGCTTCAAGAAGC
AAAGGAAAAAGCACAAAAGCGTCTGAACGAGCAACTTTCGGCCACGCGCG
GGAAGCCCCTGGCCTCTGCAACGAAaacctccgtcctcccctccccctcc
ccttcctccacggaaTACTATGCGTCTGCCGTGCAGGCGGCCACTGCGGG
TATATCCTCCCCTCGAGCCCCCCTTTCTAGTACGACCCCCCCTGTTATGG
GAGGAGCGTCTGGGGCAGGCGCCAGACCGTCGGCCAGTAACGATGCTTGT
CGCATCTACGTGGGTAGCTTGCACTACGACCTGAAGGAAGACGACATCAG
GAAAGTCTTCGCGCCCTTTGGGGCGATCCGATCCATCAATATGTCGTTCG
AGCCCGGCACGGGACGGAGCAAGGGTTTTGCGTTCGTGGACTTCGAGCAG
GCGGAAAGCGCAACCATGGCGCTCCAGACCATGAACGGCTTTCAATTGGC
GGGGCGGACCTTGAAGGTGGGCAGGCCGACGccgggaggcagtggagggg
cgggaggacggcaacaggggcaacagcaacagctgCAGCAGTCCGCGGTA
TACGGGGGTTTGCCGGGAGCTGGATTTGGAGCACAGCgggtcggaggggg
agggggaggcgctcGCGTCTACGTGGGCTCGATTCCCTTCGAGGTTTCGG
AGGAGGTGGTACGCGGATTGTTTCAATCATTCGGCAAGATACGCTCGTTT
TCTCTCTTGCCCGACCCGCAGATGAATCCAGGAAGACTGCACCGAGGGTA
CGGCTTCATTGAATTTGACAGCGAGCAGGCGGCAGCCACGGCGATCCAGA
CCATGCAGGGCTTCGAACTGCAAGGACGGGCGATGAAAGTGGGTTGGGCA
GCCCCcgtggggggaagcgggggagcgCCACCGGCAAGCGGGGCGCCGAG
CATGGCAGGAGCGGGCACTTACgtgcaacagcagcaagcgCTCAATTTGT
TGACGGGACAGTACTACGGGCAGGGGGTGATGCCAGCGGGGATGTACGCG
CCCCAACcccagcaacaacagcagcaacaaccgCCCGCTTTGATGTATCA
GCAGCCCCAGCACCAGTATTTGCAACAGTACCAACAGatgcaacagcagc
aaccgCAGCCACAAGGCCAACCCCAggggcagcaacagcagcagcagcaa
caacagcagcagcagcagatgTACTACGCCCAAAGCGCTGCGGCCTACGG
CCCTGGGAGGTCTTAA

Synonyms

Publications