rna3142, rna3142 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3142
Unique Name	rna3142
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	771
Alignment location	CM002460.1:831064..835077 +

Link to JBrowse

Properties


Property Name	Value
Product	Armadillo-like helical
Orig transcript id	gnl\|cribi\|Naga_100015g14.6383.mrna
Orig protein id	gnl\|cribi\|Naga_100015g14.6383
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:831064..835077 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g14	gene3020	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3142	rna3142-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27567.1	cds3134	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:831064..835077+
coding sequence from alignment at CM002460.1:831064..835077+

mRNA sequence

>rna3142 ID=rna3142|Name=rna3142|organism=Nannochloropsis gaditana|type=mRNA|length=771bp
ATGACAATGAAATTCTTGAAGTTGTGCACGAGCAAGATTAAGTCAGAACC
TTCGAAATTTCAAGCTCTCCATCGGGGTCTTGTTCAATCGTTTGGAAGCA
CAAAAACGGCGCCCTTAGACCCTCAAATCGAAAGTAACACCTGGTGCAAG
CAAGCCGACCCGGAGATGGCCATTTGGGCCGCCCCCATAATTCATGATAT
CCTAGAATTGTACCATTGCCGCGTTCATGATCCTCGAGTCTACAACCGGT
ATGCTCCCGACGCTGTTTTTGACGATCCTGCCGGAATACTGCGAGGAAGA
CCAGCCATTCGAGTAGCCATGGAAGCATTGCCTAAGATTTTCCGCACCGG
GGAACCCAAAGACGTCCATATCACTTATCATGCTCCCTTGGTTGGAGGGG
AACGCAACGGGTTTCGAAATGGCGACGAGCACAAAGGACAGGAGCAGGTC
GGCCCGCAGGCCCGCATTGCCCTTGTGCAAACCTACGTTTGGCGGCAAGA
CATTCTGCCCCTTTCATTATCTCCTGGTGTGCTTTTGGGACAGGGCAACT
CGACTTCTGTCGAACTGCCGACAGTCGTTTTTCTGACTTTTGATGCCAAG
ACCCACCTCATCACCCGGCATGAAGATCGATGGTGGGGAAAAGATACTAC
TACATCGTCCCCACACCTGCGCCCCGTGCACAGCATAATCAAACAGCTGA
ACGGGAGAGCTTGGGAAGTGTGGGGTGCACGGTGCTACGGTAATATCCGT
CATAACGAAGAAAGAAAATAG

protein sequence of rna3142

>rna3142-protein ID=rna3142-protein|Name=rna3142|organism=Nannochloropsis gaditana|type=polypeptide|length=628bp
MEGSSKRWNSKHQLHTQQQFFSRSPSPSLSNTSNNSPFADAVLHQQQLNQ
HSHPDDPLHYSQRSRAEVSRIPIDAVAGPSAGGAAFGDDYPLHRSVMAVS
RGGHSAVGNNQGGVEVVAPPALPFLPASTATPFSAAYFGGARYSPTGLPL
ADLAPLKFIKDESSANRYSTGSSSGSISISGNSLASVSPSVMRGEVEDGV
GVKTFLSMSNGNSSTAMLEWRSVPALPLYLEPNNHAMLAPVVEAKSDTEK
MKFLASIMKLVERTFARCQVDYVFKADKCKWKAARHRAMSRVDFRCRVYR
EGGTNTGLVVEFQKRLGDYFLMRDVMESFLAGAEQAGLVRVTGGHGSGES
QGSLDHTNTPSEHAVFASTDPFQNLGGSGSAANFLSPPSFGRSFTASANE
SLLHTKSSGMSADSNVASPVHSDPVAYASDSAVLAPLLEMATGDCDLARL
EGVLGLAKLSVLEDNRAVLKDAGAIPILVSIIKHMHIEPAVRQAAVTALS
NLSESASCKHPLVEAGVVRSLLRLAEQTTKKGAVQKSGCHQSSSASSTGS
MASSWNVLVSRCLYMDLEIGRESARTLANLSEEHAAVMIRDLGRDGVKEF
LKSVDSVEDERLRMHARRFKTRMGQVVC

mRNA from alignment at CM002460.1:831064..835077+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3142 ID=rna3142|Name=rna3142|organism=Nannochloropsis gaditana|type=mRNA|length=4014bp|location=Sequence derived from alignment at CM002460.1:831064..835077+ (Nannochloropsis gaditana)
AGCGGAATACGGCGGCTGAAGGGCCATCGCTACGAGGGCTCCACGTTTGG
ATTTTGTGGCATGGGTCTCGATGTCAATCGGATTGAAATGGAGAGGTGTC
TCAGTGTTGGCTTGATTTTTTTATTGGTGTTGTGCAAAGGAATTCAACAC
GcgttttctcttccttgagacgagcgagcgaggaggcggatcCTCTCAAG
CAAGCCTTGGGTTCATGTCGTTATACGCATATCACAAAGTCTTTCGAGCA
CAAGTTCTCGTTCAGGTCTCATCTTTCACAGATAAACGAACTTTACATAG
GTAATATCaggggcaaaaggaagaTGGCTGGTCTCTTGTGAGTCCACCAT
TCTCTGCTCACGTTTTGAGGAGCCTGCGGCCACCTAGCACGCCCAGCTTA
AAGCTCGTGCTCGGCGCCCTCAAGACGTCAGAAGAGACAGTGTAAGTGTA
GTTTGATTTTCTTAATTGTAGAACGTGCTTTCTTTTAGGGCATAAGGGGT
TTGTTTTGAGGCGAACATGTGTGATCTCTtaaggcagtggaggaagagtc
GCCTGAGCTTGAATGCCTTCGCTGGACGGGGCTCCCTGCTTGGATTTTAT
TCTTGTACGAAAGCCAATGTTTTTTGTAAACGGCGTTAGCATGTGAAAAA
CAATGTAGAGTCTGATATCATAGCTTTTTGTGAGTTTCACTGATGGTCGC
TGTGTGTGCTGAAGTGCCAAAAGGAATTCAGGGAGCCGCATCCTCGTTTA
GTAGGTGTCTTGTGCTTGACAAGAATTGAGAATTTTTAAGGCTGAAGAGC
GGCTTTTTCATAAAGTATGCACATCTAGCGAAGCAGTGCGAATCACAGTC
TTTTGAATTCTAGTAATGGAGTGCATATTGCAATGTAGAATGTACGGGAG
ACGGGCCGAAAGACTTCGTTGTCTGGAGTGTCGAGATACGAAATATCCGA
CGGTGGTAGTCGCTTTACTCGTGCAGTATGTAGTATATGCAATATTTATG
CAGTTAATTGAAGTGTGAAAGGAGGGGTGAACAgcagggggccggggggg
cgcgATATATGGAAACGGATCATGTTCGAATACGGTCTCATCTTCTCTGC
CTTAACCCACACAGTTTTTTGTCAAATCACAGACAAAGACGATAGGCAAG
CGTTCAGCTTCAAGACTTTGGACGCAGTGTGGACATCGCGTCTAAGTGTG
TGCATACTTATTTGTTGATATTTGCTCGGACCGGAGCCGATCCGCAGCCT
GTAAACAACCACCAAATCAGTGAGAAAATAGAGCCAGATACTTGCACGGG
GCCAAGATGGGGGACTTATTGGTCGTGCACCGTTTGTGCCTGTGATTGCC
CAGATTTGGCTTTCTTACTCTTAAGGCAATACTCCTCTCCGAGTGCTGTC
TCTCTCTCCAGTCTATAATTCGGCCATCGGTTCGTAAGATTCCCCCGTAT
CGCTGTTCGtaaggaatggagggatcCTCAAAACGATGGAATAGCAAGCA
TCAGCTCCATACACAACAACAATTTTTTTCACGATCTCCCTCGCCATCGT
TGAGCAACACCAGCAACAACAGTCCTTTCGCAGATGCTGTCCTTCACCAA
CAGCAACTTAATCAGCATTCACACCCTGATGACCCGCTCCACTACTCTCA
ACGTTCCCGTGCTGAAGTCTCTCGCATCCCCATCGATGCGGTTGCGGGGC
CATCTGCCGGCGGTGCGGCCTTTGGGGACGATTATCCGTTGCATCGGTCG
GTCATGGCAGTCTCACGAGGCGGGCACAGTGCCGTGGGCAATAACCAAGG
AGGTGTTGAGGTGGTcgcgccgcccgccctcccgttcctcccggCCTCGA
CCGCTACGCCATTCTCTGCAGCTTACTTCGGCGGAGCGCGATACTCTCCC
ACGGGATTGCCCCTGGCAGACCTAGCTCCCTTAAAGTTTATCAAGGACGA
GAGCAGTGCGAATCGGTACAGCACGGGTAGCAGCAGCGGAAGCATCAGCA
TCAGCGGTAATAGCCTCGCGTCAGTTTCGCCGTCGGTCATGCGTGGTGAG
GTGGAAGATGGAGTCGGTGTCAAGACTTTTCTCTCTATGTCGAATGGCAA
CAGCAGCACTGCCATGTTGGAGTGGCGCAGCGTGCCAGCCCTGCCTTTAT
ATTTGGAACCCAATAACCATGCCATGCTGGCCCCTGTCGTAGAGGCGAAG
TCTGACACAGAGAAAATGAAGTTCCTGGCTTCGATCATGAAACTGGTGGA
GCGGACTTTCGCTCGCTGTCAGGTCGACTATGTCTTCAAGGCTGACAAGT
GTAAATGGAAAGCAGCCCGTCACCGGGCCATGTCTCGCGTGGACTTTCGC
TGCCGTGTGTATCGCGAAGGCGGCACCAATACAGGATTGGTGGTGGAATT
CCAGAAGCGCTTGGGTGACTATTTCTTGATGCGGGATGTCATGGAGAGTT
TCTTGGCGGGCGCGGAACAGGCGGGTCTCGTCCGCGTCAcgggaggacat
ggaagcGGAGAAAGTCAGGGCAGCCTCGATCACACTAACACTCCAAGCGA
GCATGCGGTTTTCGCTTCGACTGATCCCTTCCAAAATTTGGGAGGTAGTG
GTAGTGCTGCTAATTTCCTGTCTCCGCCCAGCTTCGGGCGCTCCTTCACT
GCCAGCGCCAATGAATCCTTGTTGCACACTAAGTCCTCCGGCATGAGTGC
TGACTCTAACGTTGCTTCGCCTGTTCATTCAGACCCTGTAGCGTACGCAT
CCGATAGtgccgtcctcgccccacTCCTAGAAATGGCCACGGGTGATTGC
GACTTGGCCCGCCTGGAAGGTGTCCTTGGTCTCGCCAAGCTGTCGGTGCT
GGAAGACAACCGGGCTGTGCtgaaggacgcgggggcgATTCCTATCTTGG
TATCTATCATCAAACACATGCATATCGAGCCGGCGGTACGACAAGCGGCG
GTGACCGCTCTCTCCAACTTGTCTGAGAGCGCCTCTTGCAAGCATCCCTT
GGTAGAGGCGGGGGTGGTGCGTAGCCTTCTGCGTTTGGCGGAGCAGACTA
CGAAGAAGGGTGCGGTCCAGAAAAGTGGGTGTCATCAGTCGtcctcggct
tcctccaccggtTCCATGGCATCTTCTTGGAATGTCCTTGTTTCGAGATG
TCTGTACATGGATTTGGAAAttgggagagaaagcgcgCGGACCCTGGCGA
ATCTTTCTGAGGAGCACGCGGCCGTCATGATAAGGGATCTTGGCCGGGAT
GGGGTGAAGGAGTTCCTGAAATCGGTCGACAGTGTGGAGGACGAAAGACT
GCGCATGCATGCCCGGCGATTTAAGACCCGCATGGGCCAAGTCGTGTGTT
GACGGAGGAACGCAAGGCGTGGGCACGTGTGATGTGTTTTGCAtgaggac
aggaaggaagacaagcaGTTAAATGGACATGAAAAGCAAGGGAGCTTTGG
AAGCGTGAAAGAAATGAGCCGAAGAATGAAAGGACAGAGAGttgcgacga
cgaggatcaCCGCATAGAAGTAAGATCATGATGTTGGAGGGCGGCACAGG
CATATCTTGACGAAATAGGgacaggaaaaggcaagGGAAACGCAGAGCGA
AATGCTGACAAGCATACATGATCAATGTCGTGTATATAAGCTTGGATGGC
GTCTGGAGTCATGGTTacgggaaggaaagactGCAAAATTACAAGGACAT
CTTAAGTGGTACAAACACATAGCCTGTGCACGGCCACACCCAATTATTGA
CCTGTATTGGTTTCTGTCTCGTACTTTCCGTCCCTATCGGCTGGAGGACC
GCGAAGTGTGCCCTATGAAGTGTGATTCCTGGTGGAGTAGGATGTCTGAA
TGATCCCTAGTCTGCTGATACGAACTCCGTCGCATTAAAAGTCAGGGAAG
TGAAAAGCAGGTATGAAGACATGCACAGTGAATAGAACGAATCGGAGAAA
ACGGTGCACATGTTCGAAACAACAATGGGAAGAATCAAATTTCGCTTATT
TCGCAAATTTACGG

Coding sequence (CDS) from alignment at CM002460.1:831064..835077+

>rna3142 ID=rna3142|Name=rna3142|organism=Nannochloropsis gaditana|type=CDS|length=1887bp|location=Sequence derived from alignment at CM002460.1:831064..835077+ (Nannochloropsis gaditana)
atggagggatcCTCAAAACGATGGAATAGCAAGCATCAGCTCCATACACA
ACAACAATTTTTTTCACGATCTCCCTCGCCATCGTTGAGCAACACCAGCA
ACAACAGTCCTTTCGCAGATGCTGTCCTTCACCAACAGCAACTTAATCAG
CATTCACACCCTGATGACCCGCTCCACTACTCTCAACGTTCCCGTGCTGA
AGTCTCTCGCATCCCCATCGATGCGGTTGCGGGGCCATCTGCCGGCGGTG
CGGCCTTTGGGGACGATTATCCGTTGCATCGGTCGGTCATGGCAGTCTCA
CGAGGCGGGCACAGTGCCGTGGGCAATAACCAAGGAGGTGTTGAGGTGGT
cgcgccgcccgccctcccgttcctcccggCCTCGACCGCTACGCCATTCT
CTGCAGCTTACTTCGGCGGAGCGCGATACTCTCCCACGGGATTGCCCCTG
GCAGACCTAGCTCCCTTAAAGTTTATCAAGGACGAGAGCAGTGCGAATCG
GTACAGCACGGGTAGCAGCAGCGGAAGCATCAGCATCAGCGGTAATAGCC
TCGCGTCAGTTTCGCCGTCGGTCATGCGTGGTGAGGTGGAAGATGGAGTC
GGTGTCAAGACTTTTCTCTCTATGTCGAATGGCAACAGCAGCACTGCCAT
GTTGGAGTGGCGCAGCGTGCCAGCCCTGCCTTTATATTTGGAACCCAATA
ACCATGCCATGCTGGCCCCTGTCGTAGAGGCGAAGTCTGACACAGAGAAA
ATGAAGTTCCTGGCTTCGATCATGAAACTGGTGGAGCGGACTTTCGCTCG
CTGTCAGGTCGACTATGTCTTCAAGGCTGACAAGTGTAAATGGAAAGCAG
CCCGTCACCGGGCCATGTCTCGCGTGGACTTTCGCTGCCGTGTGTATCGC
GAAGGCGGCACCAATACAGGATTGGTGGTGGAATTCCAGAAGCGCTTGGG
TGACTATTTCTTGATGCGGGATGTCATGGAGAGTTTCTTGGCGGGCGCGG
AACAGGCGGGTCTCGTCCGCGTCAcgggaggacatggaagcGGAGAAAGT
CAGGGCAGCCTCGATCACACTAACACTCCAAGCGAGCATGCGGTTTTCGC
TTCGACTGATCCCTTCCAAAATTTGGGAGGTAGTGGTAGTGCTGCTAATT
TCCTGTCTCCGCCCAGCTTCGGGCGCTCCTTCACTGCCAGCGCCAATGAA
TCCTTGTTGCACACTAAGTCCTCCGGCATGAGTGCTGACTCTAACGTTGC
TTCGCCTGTTCATTCAGACCCTGTAGCGTACGCATCCGATAGtgccgtcc
tcgccccacTCCTAGAAATGGCCACGGGTGATTGCGACTTGGCCCGCCTG
GAAGGTGTCCTTGGTCTCGCCAAGCTGTCGGTGCTGGAAGACAACCGGGC
TGTGCtgaaggacgcgggggcgATTCCTATCTTGGTATCTATCATCAAAC
ACATGCATATCGAGCCGGCGGTACGACAAGCGGCGGTGACCGCTCTCTCC
AACTTGTCTGAGAGCGCCTCTTGCAAGCATCCCTTGGTAGAGGCGGGGGT
GGTGCGTAGCCTTCTGCGTTTGGCGGAGCAGACTACGAAGAAGGGTGCGG
TCCAGAAAAGTGGGTGTCATCAGTCGtcctcggcttcctccaccggtTCC
ATGGCATCTTCTTGGAATGTCCTTGTTTCGAGATGTCTGTACATGGATTT
GGAAAttgggagagaaagcgcgCGGACCCTGGCGAATCTTTCTGAGGAGC
ACGCGGCCGTCATGATAAGGGATCTTGGCCGGGATGGGGTGAAGGAGTTC
CTGAAATCGGTCGACAGTGTGGAGGACGAAAGACTGCGCATGCATGCCCG
GCGATTTAAGACCCGCATGGGCCAAGTCGTGTGTTGA

Synonyms

Publications